Wall clock time and date at job start Tue Mar 31 2020 06:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47277 * 2 1 4 4 C 1.46507 * 120.00051 * 268.41550 * 3 2 1 5 5 C 1.50694 * 109.47339 * 263.64832 * 4 3 2 6 6 H 1.08007 * 120.00352 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00310 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00338 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47277 * 120.00030 * 9 7 5 12 12 H 1.48502 * 109.46834 * 239.99730 * 9 7 5 13 13 C 1.34779 * 120.00156 * 88.42172 * 3 2 1 14 14 O 1.21563 * 120.00094 * 4.30669 * 13 3 2 15 15 C 1.47712 * 119.99811 * 184.31648 * 13 3 2 16 16 N 1.32208 * 126.67770 * 354.83156 * 15 13 3 17 17 N 1.28847 * 110.14865 * 180.02562 * 16 15 13 18 18 H 0.96996 * 124.98352 * 179.72286 * 17 16 15 19 19 C 1.34318 * 110.03913 * 359.67966 * 17 16 15 20 20 C 1.35579 * 107.21897 * 0.11920 * 19 17 16 21 21 C 1.50373 * 124.61918 * 179.85970 * 20 19 17 22 22 C 1.53472 * 108.28639 * 343.70536 * 21 20 19 23 23 H 1.09005 * 109.46674 * 289.48343 * 22 21 20 24 24 C 1.53005 * 109.45975 * 169.50361 * 22 21 20 25 25 C 1.53109 * 109.51409 * 49.49364 * 22 21 20 26 26 C 1.50714 * 128.90377 * 180.15656 * 19 17 16 27 27 H 1.08998 * 109.47268 * 300.00282 * 1 2 3 28 28 H 1.09000 * 109.46999 * 60.00445 * 1 2 3 29 29 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47172 * 239.99764 * 2 1 3 31 31 H 1.09003 * 109.46949 * 120.00333 * 2 1 3 32 32 H 1.09001 * 109.46963 * 23.64617 * 4 3 2 33 33 H 1.08996 * 109.47145 * 143.64675 * 4 3 2 34 34 H 0.97000 * 119.99597 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.70176 * 103.40619 * 21 20 19 36 36 H 1.09000 * 109.70348 * 224.00909 * 21 20 19 37 37 H 1.08997 * 109.46499 * 299.96209 * 24 22 21 38 38 H 1.08999 * 109.46970 * 59.96148 * 24 22 21 39 39 H 1.08997 * 109.47309 * 179.97438 * 24 22 21 40 40 H 1.09001 * 109.44527 * 169.90256 * 25 22 21 41 41 H 1.09004 * 109.40831 * 49.99289 * 25 22 21 42 42 H 1.08995 * 109.69532 * 282.98476 * 26 19 17 43 43 H 1.09004 * 109.68733 * 43.52310 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2956 2.0601 -1.2683 5 6 3.7647 1.9514 -1.5856 6 1 4.4259 1.4285 -0.9103 7 6 4.2649 2.5186 -2.7385 8 7 3.4596 3.1540 -3.5616 9 14 6.0859 2.3833 -3.1322 10 1 6.7702 1.6243 -2.0547 11 1 6.2615 1.6750 -4.4254 12 1 6.6738 3.7436 -3.2290 13 6 2.2127 2.0272 1.1668 14 8 2.0581 1.4399 2.2198 15 6 2.6133 3.4490 1.1658 16 7 2.9088 4.1855 0.1084 17 7 3.2162 5.3824 0.4731 18 1 3.4722 6.0987 -0.1288 19 6 3.1291 5.4933 1.8088 20 6 2.7463 4.2841 2.2878 21 6 2.5323 3.9703 3.7428 22 6 3.1984 5.0734 4.5763 23 1 4.2819 4.9838 4.4978 24 6 2.7797 4.9287 6.0409 25 6 2.7606 6.4443 4.0536 26 6 3.3902 6.6967 2.6777 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7164 1.5928 -2.0647 33 1 2.0184 3.1110 -1.1860 34 1 3.8116 3.5534 -4.3725 35 1 1.4643 3.9404 3.9591 36 1 2.9830 3.0069 3.9811 37 1 1.6963 5.0186 6.1195 38 1 3.0913 3.9528 6.4131 39 1 3.2530 5.7118 6.6331 40 1 3.0855 7.2184 4.7488 41 1 1.6744 6.4684 3.9655 42 1 4.4645 6.8448 2.7870 43 1 2.9419 7.5810 2.2247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896860104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:33 Heat of formation + Delta-G solvation = 6.694305 kcal Electronic energy + Delta-G solvation = -24311.316338 eV Core-core repulsion = 20970.743416 eV Total energy + Delta-G solvation = -3340.572923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.65220 -40.40203 -38.38170 -36.85605 -34.66869 -33.67653 -32.37826 -31.96091 -30.23851 -28.86228 -27.27556 -25.61240 -24.88546 -24.14473 -23.05762 -21.91477 -20.02965 -19.68110 -18.66050 -18.46947 -17.53748 -17.03882 -16.69438 -16.29266 -15.79244 -15.49398 -15.06953 -14.95732 -14.43634 -14.38163 -14.16656 -14.03534 -13.94298 -13.49117 -13.40407 -13.24194 -13.11457 -12.87891 -12.69844 -12.66041 -12.35862 -12.18499 -11.82689 -11.67706 -11.66049 -11.44114 -11.36079 -11.09572 -10.81090 -10.44275 -10.14481 -9.50545 -9.34548 -8.10249 -6.18505 0.79638 1.25407 1.34486 1.37812 1.48298 2.06193 2.36202 2.51534 2.57640 3.20654 3.57795 3.73837 3.89620 3.98369 4.12347 4.23281 4.37278 4.38973 4.43907 4.53771 4.62737 4.64852 4.78379 4.82753 4.89201 4.98747 5.01918 5.04885 5.07445 5.09201 5.15724 5.25699 5.28591 5.37676 5.43790 5.52788 5.61059 5.62169 5.81896 5.92938 6.20791 6.36996 6.56381 6.85620 7.12819 7.38347 7.48993 8.96773 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.006057 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.809479 B = 4621.452288 C = 5918.110547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.245 3.755 5 C -0.514 4.514 6 H 0.032 0.968 7 C 0.032 3.968 8 N -0.915 5.915 9 Si 0.944 3.056 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.277 1.277 13 C 0.591 3.409 14 O -0.584 6.584 15 C -0.041 4.041 16 N -0.230 5.230 17 N -0.375 5.375 18 H 0.452 0.548 19 C 0.013 3.987 20 C -0.176 4.176 21 C -0.027 4.027 22 C -0.089 4.089 23 H 0.068 0.932 24 C -0.141 4.141 25 C -0.103 4.103 26 C -0.042 4.042 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.263 0.737 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 8.911 13.325 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.322 5.322 4 C 0.124 3.876 5 C -0.553 4.553 6 H 0.050 0.950 7 C -0.168 4.168 8 N -0.555 5.555 9 Si 0.771 3.229 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.379 3.621 14 O -0.465 6.465 15 C -0.200 4.200 16 N -0.066 5.066 17 N -0.089 5.089 18 H 0.298 0.702 19 C -0.114 4.114 20 C -0.187 4.187 21 C -0.066 4.066 22 C -0.107 4.107 23 H 0.086 0.914 24 C -0.198 4.198 25 C -0.141 4.141 26 C -0.081 4.081 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.916 8.580 12.506 15.287 hybrid contribution 1.065 -0.183 -0.521 1.199 sum -0.852 8.398 11.985 14.659 Atomic orbital electron populations 1.22010 0.94430 1.03222 1.01183 1.21489 0.95408 0.82204 1.02493 1.48240 1.62362 1.14238 1.07318 1.19468 0.95070 0.94212 0.78812 1.21363 0.93962 1.34233 1.05706 0.94991 1.25360 1.00768 0.94820 0.95847 1.70026 1.35924 1.37011 1.12572 0.85737 0.81585 0.77832 0.77773 1.20751 1.20194 1.20281 1.17280 0.76603 0.84794 0.83462 1.90605 1.56015 1.68101 1.31806 1.21664 1.11144 0.95540 0.91630 1.74706 1.15282 0.91903 1.24708 1.43491 1.48621 1.09996 1.06803 0.70192 1.21763 1.05867 0.99079 0.84739 1.20158 1.09332 0.92514 0.96668 1.19939 1.00352 0.98758 0.87528 1.21243 0.99911 0.94307 0.95274 0.91400 1.21780 1.01749 1.02060 0.94235 1.21624 1.00833 0.96743 0.94861 1.20420 1.02952 0.91523 0.93174 0.93789 0.93068 0.88911 0.90291 0.91136 0.96968 0.92109 0.92795 0.91767 0.92852 0.92373 0.93294 0.90607 0.87905 0.91736 0.88492 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.23 71.98 0.74 -4.27 16 2 C 0.11 4.27 6.11 86.38 0.53 4.80 16 3 N -0.59 -28.34 2.48 -829.73 -2.05 -30.39 16 4 C 0.25 12.95 4.76 85.63 0.41 13.35 16 5 C -0.51 -28.92 8.51 25.60 0.22 -28.70 16 6 H 0.03 1.90 7.81 -2.91 -0.02 1.87 16 7 C 0.03 1.74 5.46 84.65 0.46 2.20 16 8 N -0.92 -51.87 13.29 21.45 0.28 -51.58 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.20 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.59 28.79 7.61 86.75 0.66 29.45 16 14 O -0.58 -28.96 15.34 -3.92 -0.06 -29.02 16 15 C -0.04 -1.88 6.80 42.14 0.29 -1.59 16 16 N -0.23 -10.33 8.15 -48.62 -0.40 -10.72 16 17 N -0.38 -12.75 6.82 -48.18 -0.33 -13.08 16 18 H 0.45 12.19 8.96 -219.80 -1.97 10.22 16 19 C 0.01 0.37 7.12 41.57 0.30 0.67 16 20 C -0.18 -6.49 5.99 -20.03 -0.12 -6.61 16 21 C -0.03 -0.86 4.89 29.90 0.15 -0.72 16 22 C -0.09 -1.90 2.70 -10.60 -0.03 -1.93 16 23 H 0.07 1.50 8.12 -2.38 -0.02 1.48 16 24 C -0.14 -2.40 9.16 71.98 0.66 -1.75 16 25 C -0.10 -1.69 5.19 30.76 0.16 -1.53 16 26 C -0.04 -0.75 6.31 29.99 0.19 -0.56 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 3.08 8.06 -2.38 -0.02 3.06 16 31 H 0.07 2.81 7.41 -2.39 -0.02 2.80 16 32 H 0.01 0.68 8.02 -2.39 -0.02 0.66 16 33 H 0.06 3.37 5.30 -2.39 -0.01 3.36 16 34 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.06 2.01 8.12 -2.38 -0.02 1.99 16 36 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.07 8.11 -2.39 -0.02 1.05 16 41 H 0.06 1.13 8.12 -2.38 -0.02 1.11 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -71.26 346.83 3.11 -68.15 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -0.96 Total: 17.62 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.60 Total: 2.82 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -2.49 Total: -105.78 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.06 Total: -29.02 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.26 3.11 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896860104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.845 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds