Wall clock time and date at job start Tue Mar 31 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46874 * 2 1 4 4 C 1.46494 * 119.99954 * 91.61995 * 3 2 1 5 5 C 1.50699 * 109.47032 * 90.00146 * 4 3 2 6 6 H 1.07999 * 120.00074 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47267 * 90.00082 * 9 7 5 11 11 H 1.48498 * 109.47526 * 210.00623 * 9 7 5 12 12 H 1.48508 * 109.47221 * 330.00563 * 9 7 5 13 13 C 1.34785 * 119.99914 * 271.62094 * 3 2 1 14 14 O 1.21629 * 119.99944 * 184.50587 * 13 3 2 15 15 C 1.47160 * 119.99866 * 4.50684 * 13 3 2 16 16 C 1.38407 * 126.88695 * 7.62317 * 15 13 3 17 17 C 1.39674 * 105.35933 * 179.91490 * 16 15 13 18 18 C 1.50700 * 126.06860 * 180.09447 * 17 16 15 19 19 C 1.53004 * 117.49518 * 344.02724 * 18 17 16 20 20 C 1.53005 * 117.49593 * 275.36951 * 18 17 16 21 21 N 1.30868 * 107.86095 * 0.35463 * 17 16 15 22 22 N 1.28441 * 110.92634 * 359.76915 * 21 17 16 23 23 C 1.46499 * 125.18974 * 179.97438 * 22 21 17 24 24 C 1.52998 * 109.47175 * 264.44687 * 23 22 21 25 25 H 1.08997 * 109.47224 * 53.53026 * 1 2 3 26 26 H 1.09004 * 109.46601 * 173.52565 * 1 2 3 27 27 H 1.08995 * 109.46999 * 293.52571 * 1 2 3 28 28 H 1.08996 * 109.46820 * 240.00146 * 2 1 3 29 29 H 1.09001 * 109.47272 * 119.99988 * 2 1 3 30 30 H 1.09003 * 109.47074 * 209.99753 * 4 3 2 31 31 H 1.09000 * 109.47426 * 329.99946 * 4 3 2 32 32 H 0.96996 * 120.00390 * 179.97438 * 8 7 5 33 33 H 1.07998 * 127.31807 * 0.03285 * 16 15 13 34 34 H 1.08997 * 115.55056 * 129.70000 * 18 17 16 35 35 H 1.09002 * 117.50021 * 0.02562 * 19 18 17 36 36 H 1.09001 * 117.49868 * 145.02569 * 19 18 17 37 37 H 1.08998 * 117.49785 * 214.98043 * 20 18 17 38 38 H 1.09000 * 117.49734 * 359.97438 * 20 18 17 39 39 H 1.09002 * 109.46670 * 24.44194 * 23 22 21 40 40 H 1.09002 * 109.47195 * 144.44272 * 23 22 21 41 41 H 1.09005 * 109.47334 * 184.82101 * 24 23 22 42 42 H 1.08997 * 109.47575 * 304.82080 * 24 23 22 43 43 H 1.09007 * 109.47296 * 64.82369 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2963 2.0599 1.2682 5 6 3.7306 1.8192 1.6628 6 1 4.3710 1.2203 1.0323 7 6 4.2254 2.3637 2.8289 8 7 3.4455 3.0926 3.5971 9 14 6.0031 2.0648 3.3185 10 1 6.8603 3.1348 2.7479 11 1 6.1175 2.0757 4.7990 12 1 6.4451 0.7462 2.7976 13 6 2.2118 2.0276 -1.1668 14 8 2.6942 3.1441 -1.1708 15 6 1.8394 1.3824 -2.4359 16 6 1.1524 0.1910 -2.5920 17 6 1.0426 0.0053 -3.9719 18 6 0.3704 -1.1545 -4.6604 19 6 0.0817 -2.4021 -3.8229 20 6 1.1961 -2.4251 -4.8722 21 7 1.6319 1.0145 -4.5609 22 7 2.1075 1.8364 -3.6961 23 6 2.8282 3.0719 -4.0127 24 6 4.3345 2.8058 -3.9823 25 1 -0.3633 0.6108 -0.8264 26 1 -0.3633 -1.0212 -0.1159 27 1 -0.3633 0.4102 0.9422 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1260 3.1303 1.1524 31 1 1.6359 1.6685 2.0421 32 1 3.7935 3.4753 4.4176 33 1 0.7789 -0.4564 -1.8124 34 1 -0.3513 -0.8887 -5.4328 35 1 0.3776 -2.3837 -2.7740 36 1 -0.8297 -2.9573 -4.0447 37 1 1.0173 -2.9954 -5.7837 38 1 2.2256 -2.4219 -4.5140 39 1 2.5401 3.4161 -5.0061 40 1 2.5793 3.8366 -3.2768 41 1 4.8721 3.7420 -4.1331 42 1 4.6090 2.3808 -3.0168 43 1 4.5958 2.1049 -4.7753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906376039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:16 Heat of formation + Delta-G solvation = 85.120792 kcal Electronic energy + Delta-G solvation = -24104.796486 eV Core-core repulsion = 20767.624391 eV Total energy + Delta-G solvation = -3337.172095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.42286 -38.83999 -37.31659 -35.73816 -33.90290 -32.99804 -31.01282 -30.00206 -29.40276 -27.17704 -24.47126 -23.71938 -23.13283 -22.74156 -22.31657 -21.09996 -19.99603 -18.48806 -16.78112 -16.50611 -16.27723 -15.80510 -15.55517 -15.06702 -14.65816 -14.43359 -14.17378 -14.03837 -13.76399 -13.14970 -12.64976 -12.34985 -12.17917 -12.12903 -12.00788 -11.83205 -11.67475 -11.56358 -11.27473 -11.12515 -10.98307 -10.89633 -10.77614 -10.66957 -10.54275 -10.17396 -10.04848 -9.69668 -9.19278 -8.75498 -8.58562 -8.46871 -7.75843 -6.08056 -4.12790 1.66896 2.61516 2.65787 3.29110 3.35170 3.37547 3.76178 3.78706 3.87334 4.40173 4.43995 4.78003 4.83604 4.90502 4.96242 5.11469 5.25473 5.27754 5.30467 5.39546 5.40931 5.54143 5.57919 5.61791 5.72341 5.74047 5.78147 5.89640 5.97065 6.02309 6.06330 6.16118 6.21391 6.23536 6.51390 6.67764 6.97086 7.01173 7.35428 7.45099 7.87564 8.17534 8.23226 8.35106 8.80773 8.96570 9.52226 11.00042 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.004863 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.019634 B = 5756.173046 C = 6528.990933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 N -0.575 5.575 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.574 3.426 14 O -0.539 6.539 15 C -0.017 4.017 16 C -0.214 4.214 17 C 0.044 3.956 18 C -0.067 4.067 19 C -0.168 4.168 20 C -0.169 4.169 21 N -0.281 5.281 22 N -0.257 5.257 23 C 0.116 3.884 24 C -0.163 4.163 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.184 0.816 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -8.823 -14.336 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.039 4.039 3 N -0.306 5.306 4 C 0.130 3.870 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.360 3.640 14 O -0.417 6.417 15 C -0.145 4.145 16 C -0.242 4.242 17 C -0.113 4.113 18 C -0.087 4.087 19 C -0.205 4.205 20 C -0.207 4.207 21 N -0.114 5.114 22 N -0.045 5.045 23 C -0.004 4.004 24 C -0.221 4.221 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.200 0.800 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.719 -7.504 -15.191 17.882 hybrid contribution 0.820 -0.392 1.137 1.456 sum -4.899 -7.895 -14.054 16.847 Atomic orbital electron populations 1.22398 0.96526 1.01777 1.03056 1.22068 0.93748 0.84295 1.03816 1.47981 1.62455 1.13153 1.06970 1.19360 0.96368 0.93747 0.77523 1.21400 0.96239 1.32447 1.06392 0.92416 1.24914 0.97961 0.94882 0.96203 1.69926 1.35804 1.33838 1.13763 0.86503 0.84805 0.78665 0.77479 1.20559 1.21108 1.19916 1.16900 0.79597 0.85413 0.82134 1.90748 1.44830 1.19485 1.86685 1.21826 1.06727 0.97882 0.88110 1.23104 1.05994 0.98099 0.97033 1.20982 1.02888 0.95835 0.91570 1.19958 1.01655 0.85375 1.01719 1.23005 1.00222 0.99660 0.97630 1.22990 0.97148 0.99764 1.00821 1.72975 1.14589 1.02602 1.21231 1.45751 1.38727 1.17873 1.02106 1.22124 0.92179 0.82332 1.03755 1.22074 0.93733 1.02998 1.03274 0.91938 0.91727 0.91775 0.89761 0.89683 0.93765 0.94532 0.92671 0.79964 0.86753 0.88281 0.88241 0.88530 0.88717 0.88763 0.86570 0.90190 0.91209 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.58 37.16 0.32 -2.08 16 2 C 0.08 1.37 5.59 -4.04 -0.02 1.35 16 3 N -0.58 -12.18 2.46 -176.43 -0.43 -12.62 16 4 C 0.25 6.36 5.12 -5.20 -0.03 6.33 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.57 12.31 7.63 -12.63 -0.10 12.22 16 14 O -0.54 -13.11 14.42 5.25 0.08 -13.04 16 15 C -0.02 -0.30 6.78 -82.06 -0.56 -0.86 16 16 C -0.21 -3.28 6.88 -38.98 -0.27 -3.54 16 17 C 0.04 0.64 6.86 -82.47 -0.57 0.08 16 18 C -0.07 -0.75 6.33 -91.77 -0.58 -1.33 16 19 C -0.17 -1.48 10.03 -26.69 -0.27 -1.74 16 20 C -0.17 -1.60 10.24 -26.69 -0.27 -1.88 16 21 N -0.28 -4.58 11.90 33.64 0.40 -4.18 16 22 N -0.26 -4.35 3.35 -57.14 -0.19 -4.54 16 23 C 0.12 1.69 6.44 -4.04 -0.03 1.67 16 24 C -0.16 -2.25 10.24 37.16 0.38 -1.87 16 25 H 0.06 0.87 6.60 -51.93 -0.34 0.53 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.25 4.78 -51.93 -0.25 1.00 16 29 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 30 H 0.04 1.27 7.49 -51.93 -0.39 0.88 16 31 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.18 2.40 2.83 -52.49 -0.15 2.25 16 34 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 0.88 7.21 -51.93 -0.37 0.50 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.12 1.86 6.49 -51.93 -0.34 1.52 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -32.37 350.89 -8.00 -40.37 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.45 Total: 2.48 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.40 Total: -4.98 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.51 Total: -46.72 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.37 -8.00 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906376039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.493 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds