Wall clock time and date at job start Tue Mar 31 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46874 * 2 1 4 4 C 1.46494 * 119.99954 * 91.61995 * 3 2 1 5 5 C 1.50699 * 109.47032 * 90.00146 * 4 3 2 6 6 H 1.07999 * 120.00074 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00010 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00098 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47267 * 90.00082 * 9 7 5 11 11 H 1.48498 * 109.47526 * 210.00623 * 9 7 5 12 12 H 1.48508 * 109.47221 * 330.00563 * 9 7 5 13 13 C 1.34785 * 119.99914 * 271.62094 * 3 2 1 14 14 O 1.21629 * 119.99944 * 184.50587 * 13 3 2 15 15 C 1.47160 * 119.99866 * 4.50684 * 13 3 2 16 16 C 1.38407 * 126.88695 * 7.62317 * 15 13 3 17 17 C 1.39674 * 105.35933 * 179.91490 * 16 15 13 18 18 C 1.50700 * 126.06860 * 180.09447 * 17 16 15 19 19 C 1.53004 * 117.49518 * 344.02724 * 18 17 16 20 20 C 1.53005 * 117.49593 * 275.36951 * 18 17 16 21 21 N 1.30868 * 107.86095 * 0.35463 * 17 16 15 22 22 N 1.28441 * 110.92634 * 359.76915 * 21 17 16 23 23 C 1.46499 * 125.18974 * 179.97438 * 22 21 17 24 24 C 1.52998 * 109.47175 * 264.44687 * 23 22 21 25 25 H 1.08997 * 109.47224 * 53.53026 * 1 2 3 26 26 H 1.09004 * 109.46601 * 173.52565 * 1 2 3 27 27 H 1.08995 * 109.46999 * 293.52571 * 1 2 3 28 28 H 1.08996 * 109.46820 * 240.00146 * 2 1 3 29 29 H 1.09001 * 109.47272 * 119.99988 * 2 1 3 30 30 H 1.09003 * 109.47074 * 209.99753 * 4 3 2 31 31 H 1.09000 * 109.47426 * 329.99946 * 4 3 2 32 32 H 0.96996 * 120.00390 * 179.97438 * 8 7 5 33 33 H 1.07998 * 127.31807 * 0.03285 * 16 15 13 34 34 H 1.08997 * 115.55056 * 129.70000 * 18 17 16 35 35 H 1.09002 * 117.50021 * 0.02562 * 19 18 17 36 36 H 1.09001 * 117.49868 * 145.02569 * 19 18 17 37 37 H 1.08998 * 117.49785 * 214.98043 * 20 18 17 38 38 H 1.09000 * 117.49734 * 359.97438 * 20 18 17 39 39 H 1.09002 * 109.46670 * 24.44194 * 23 22 21 40 40 H 1.09002 * 109.47195 * 144.44272 * 23 22 21 41 41 H 1.09005 * 109.47334 * 184.82101 * 24 23 22 42 42 H 1.08997 * 109.47575 * 304.82080 * 24 23 22 43 43 H 1.09007 * 109.47296 * 64.82369 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2963 2.0599 1.2682 5 6 3.7306 1.8192 1.6628 6 1 4.3710 1.2203 1.0323 7 6 4.2254 2.3637 2.8289 8 7 3.4455 3.0926 3.5971 9 14 6.0031 2.0648 3.3185 10 1 6.8603 3.1348 2.7479 11 1 6.1175 2.0757 4.7990 12 1 6.4451 0.7462 2.7976 13 6 2.2118 2.0276 -1.1668 14 8 2.6942 3.1441 -1.1708 15 6 1.8394 1.3824 -2.4359 16 6 1.1524 0.1910 -2.5920 17 6 1.0426 0.0053 -3.9719 18 6 0.3704 -1.1545 -4.6604 19 6 0.0817 -2.4021 -3.8229 20 6 1.1961 -2.4251 -4.8722 21 7 1.6319 1.0145 -4.5609 22 7 2.1075 1.8364 -3.6961 23 6 2.8282 3.0719 -4.0127 24 6 4.3345 2.8058 -3.9823 25 1 -0.3633 0.6108 -0.8264 26 1 -0.3633 -1.0212 -0.1159 27 1 -0.3633 0.4102 0.9422 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1260 3.1303 1.1524 31 1 1.6359 1.6685 2.0421 32 1 3.7935 3.4753 4.4176 33 1 0.7789 -0.4564 -1.8124 34 1 -0.3513 -0.8887 -5.4328 35 1 0.3776 -2.3837 -2.7740 36 1 -0.8297 -2.9573 -4.0447 37 1 1.0173 -2.9954 -5.7837 38 1 2.2256 -2.4219 -4.5140 39 1 2.5401 3.4161 -5.0061 40 1 2.5793 3.8366 -3.2768 41 1 4.8721 3.7420 -4.1331 42 1 4.6090 2.3808 -3.0168 43 1 4.5958 2.1049 -4.7753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906376039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:15 Heat of formation + Delta-G solvation = 66.032186 kcal Electronic energy + Delta-G solvation = -24105.624230 eV Core-core repulsion = 20767.624391 eV Total energy + Delta-G solvation = -3337.999839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.68576 -40.49199 -38.18907 -37.27160 -35.23470 -34.90907 -32.62040 -31.34320 -30.57790 -29.11905 -25.74342 -25.30082 -24.60223 -23.90843 -23.09919 -22.42486 -21.31589 -19.75859 -18.66589 -18.15235 -17.69786 -17.06059 -17.00095 -16.48090 -16.11778 -15.74464 -15.68385 -15.30631 -15.01092 -14.53840 -14.30761 -13.75085 -13.67597 -13.40594 -13.31486 -13.19763 -12.99821 -12.85588 -12.68182 -12.55820 -12.33002 -12.22053 -12.20186 -12.07870 -11.77872 -11.73841 -11.43759 -11.07701 -10.88066 -10.65511 -10.09366 -9.76535 -9.50544 -8.23801 -6.38024 0.26644 1.34820 1.36872 1.38959 1.48760 1.51104 2.18237 2.28001 2.41016 2.99968 3.06239 3.36871 3.49033 3.82276 3.95894 4.04224 4.06734 4.13369 4.24188 4.26723 4.33890 4.37814 4.46744 4.58113 4.60360 4.70065 4.83794 4.90501 4.92609 4.98862 5.02545 5.04435 5.13141 5.17472 5.30931 5.37934 5.40225 5.51110 5.54064 5.75645 5.78605 6.02978 6.56981 6.69773 7.06020 7.19196 7.35212 8.83422 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.004863 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.019634 B = 5756.173046 C = 6528.990933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 N -0.581 5.581 4 C 0.266 3.734 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.264 1.264 13 C 0.568 3.432 14 O -0.582 6.582 15 C -0.046 4.046 16 C -0.197 4.197 17 C 0.046 3.954 18 C -0.089 4.089 19 C -0.151 4.151 20 C -0.166 4.166 21 N -0.288 5.288 22 N -0.264 5.264 23 C 0.111 3.889 24 C -0.153 4.153 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.002 0.998 31 H 0.032 0.968 32 H 0.268 0.732 33 H 0.205 0.795 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.032 0.968 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -11.475 -15.676 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.043 4.043 3 N -0.311 5.311 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.789 3.211 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.188 1.188 13 C 0.356 3.644 14 O -0.464 6.464 15 C -0.175 4.175 16 C -0.225 4.225 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.189 4.189 20 C -0.204 4.204 21 N -0.121 5.121 22 N -0.051 5.051 23 C -0.008 4.008 24 C -0.211 4.211 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.020 0.980 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.221 0.779 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.051 0.949 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.180 -10.194 -16.542 20.390 hybrid contribution 0.910 0.412 1.493 1.796 sum -5.271 -9.782 -15.049 18.707 Atomic orbital electron populations 1.22337 0.93885 1.04392 1.02249 1.22395 0.95874 0.81530 1.04547 1.47952 1.62684 1.14902 1.05560 1.18825 0.95472 0.91748 0.79450 1.21629 0.97211 1.32594 1.06603 0.93187 1.25776 1.02350 0.94419 0.96106 1.70033 1.37784 1.34489 1.14206 0.85464 0.79270 0.78738 0.77638 1.20684 1.19799 1.18849 1.17355 0.78766 0.85032 0.83266 1.90708 1.46752 1.21408 1.87488 1.21466 1.09316 0.99406 0.87264 1.23366 1.04233 0.96792 0.98088 1.21601 1.01837 0.96183 0.91388 1.20131 1.02743 0.84839 1.03162 1.23169 1.00840 0.97446 0.97422 1.23055 0.96669 0.98514 1.02126 1.72995 1.14779 1.03099 1.21239 1.45943 1.39056 1.18451 1.01698 1.22234 0.92486 0.81521 1.04567 1.22006 0.93521 1.04152 1.01447 0.92456 0.87231 0.92935 0.87948 0.89944 0.98021 0.95009 0.92315 0.77882 0.85627 0.88135 0.85712 0.86486 0.90037 0.85835 0.88668 0.88045 0.94902 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.58 71.98 0.62 -3.63 16 2 C 0.08 2.49 5.59 86.38 0.48 2.97 16 3 N -0.58 -25.46 2.46 -830.34 -2.04 -27.50 16 4 C 0.27 14.28 5.12 85.63 0.44 14.72 16 5 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.74 5.46 84.65 0.46 1.20 16 8 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.57 25.46 7.63 86.58 0.66 26.12 16 14 O -0.58 -30.24 14.42 -4.12 -0.06 -30.30 16 15 C -0.05 -1.70 6.78 40.79 0.28 -1.42 16 16 C -0.20 -5.71 6.88 22.66 0.16 -5.55 16 17 C 0.05 1.26 6.86 43.05 0.30 1.56 16 18 C -0.09 -1.69 6.33 -11.54 -0.07 -1.76 16 19 C -0.15 -2.03 10.03 30.62 0.31 -1.72 16 20 C -0.17 -2.58 10.24 30.62 0.31 -2.26 16 21 N -0.29 -9.04 11.90 -47.49 -0.57 -9.60 16 22 N -0.26 -8.91 3.35 -334.69 -1.12 -10.03 16 23 C 0.11 3.31 6.44 86.38 0.56 3.86 16 24 C -0.15 -4.30 10.24 71.98 0.74 -3.57 16 25 H 0.06 1.50 6.60 -2.39 -0.02 1.49 16 26 H 0.11 1.76 8.13 -2.38 -0.02 1.74 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 2.87 4.78 -2.39 -0.01 2.86 16 29 H 0.08 2.66 8.06 -2.39 -0.02 2.64 16 30 H 0.00 0.10 7.49 -2.39 -0.02 0.09 16 31 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.20 4.79 2.83 -2.91 -0.01 4.78 16 34 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 1.33 7.21 -2.39 -0.02 1.32 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.10 3.24 6.49 -2.39 -0.02 3.22 16 41 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -73.47 350.89 5.00 -68.46 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.01 Total: 17.65 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.47 Total: -0.41 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -3.44 Total: -102.18 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -73.47 5.00 -68.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906376039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.496 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds