Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47074 * 2 1 4 4 N 1.28441 * 125.19184 * 265.21682 * 3 2 1 5 5 C 1.30866 * 110.92213 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.06532 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.50024 * 163.77110 * 6 5 4 8 8 C 1.53003 * 117.49823 * 95.10919 * 6 5 4 9 9 C 1.39668 * 107.86454 * 359.74183 * 5 4 3 10 10 C 1.36599 * 125.18307 * 85.19574 * 3 2 1 11 11 C 1.47157 * 126.88913 * 0.02562 * 10 3 2 12 12 O 1.21626 * 120.00213 * 349.63987 * 11 10 3 13 13 N 1.34785 * 120.00258 * 169.64240 * 11 10 3 14 14 C 1.46503 * 119.99753 * 0.22551 * 13 11 10 15 15 C 1.46495 * 119.99953 * 180.22791 * 13 11 10 16 16 H 1.08994 * 109.47328 * 359.97438 * 15 13 11 17 17 C 1.52998 * 109.47086 * 120.00231 * 15 13 11 18 18 C 1.50703 * 109.47005 * 240.00099 * 15 13 11 19 19 H 1.07999 * 120.00121 * 359.97438 * 18 15 13 20 20 C 1.37874 * 120.00082 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99946 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 120.00257 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47141 * 89.99512 * 22 20 18 24 24 H 1.48495 * 109.47547 * 210.00054 * 22 20 18 25 25 H 1.48505 * 109.47080 * 329.99906 * 22 20 18 26 26 H 1.09000 * 109.47712 * 65.01319 * 1 2 3 27 27 H 1.09000 * 109.47160 * 185.01372 * 1 2 3 28 28 H 1.09001 * 109.47210 * 305.01380 * 1 2 3 29 29 H 1.09003 * 109.47309 * 240.00510 * 2 1 3 30 30 H 1.08995 * 109.47535 * 120.00596 * 2 1 3 31 31 H 1.09000 * 115.55300 * 309.44329 * 6 5 4 32 32 H 1.08993 * 117.49537 * 0.02562 * 7 6 5 33 33 H 1.08997 * 117.49763 * 145.01689 * 7 6 5 34 34 H 1.08998 * 117.50186 * 214.97483 * 8 6 5 35 35 H 1.08999 * 117.49920 * 359.97438 * 8 6 5 36 36 H 1.07999 * 127.32232 * 180.30567 * 9 5 4 37 37 H 1.09004 * 109.46788 * 83.20774 * 14 13 11 38 38 H 1.08993 * 109.46600 * 203.20549 * 14 13 11 39 39 H 1.08999 * 109.47171 * 323.21094 * 14 13 11 40 40 H 1.08994 * 109.47282 * 59.99672 * 17 15 13 41 41 H 1.09004 * 109.47052 * 180.02562 * 17 15 13 42 42 H 1.09003 * 109.46942 * 299.99698 * 17 15 13 43 43 H 0.97001 * 119.99762 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3475 2.0500 -1.0460 5 6 2.7444 3.2549 -0.7246 6 6 3.2071 4.3217 -1.6831 7 6 3.2651 5.7601 -1.1649 8 6 2.1722 5.3459 -2.1534 9 6 2.6580 3.3783 0.6639 10 6 2.1925 2.1545 1.1125 11 6 1.9314 1.7663 2.5078 12 8 1.3424 0.7303 2.7508 13 7 2.3450 2.5589 3.5165 14 6 3.0501 3.8092 3.2237 15 6 2.0895 2.1699 4.9056 16 1 1.5581 1.2185 4.9246 17 6 3.4196 2.0269 5.6480 18 6 1.2506 3.2267 5.5769 19 1 0.9393 4.1008 5.0242 20 6 0.8814 3.0781 6.8969 21 7 1.2609 2.0139 7.5701 22 14 -0.1578 4.3882 7.7293 23 1 -1.5965 4.0673 7.5492 24 1 0.1629 4.4277 9.1787 25 1 0.1339 5.7115 7.1216 26 1 -0.3634 0.4341 -0.9314 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3634 0.5896 0.8417 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9702 4.0130 -2.3975 32 1 2.9691 5.9346 -0.1305 33 1 4.0663 6.3977 -1.5385 34 1 2.2548 5.7113 -3.1770 35 1 1.1566 5.2477 -1.7698 36 1 2.9040 4.2440 1.2609 37 1 2.3245 4.5933 3.0071 38 1 3.6507 4.0981 4.0861 39 1 3.6994 3.6665 2.3599 40 1 3.9505 2.9785 5.6289 41 1 3.2295 1.7370 6.6815 42 1 4.0263 1.2625 5.1624 43 1 1.0008 1.9092 8.4987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906565227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = 83.612363 kcal Electronic energy + Delta-G solvation = -23961.118454 eV Core-core repulsion = 20623.880948 eV Total energy + Delta-G solvation = -3337.237505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.40486 -38.85112 -37.28377 -35.57339 -34.04262 -33.03037 -31.00496 -29.52985 -28.87731 -26.55368 -25.26424 -24.46917 -23.33537 -22.41938 -22.30463 -20.71152 -19.65196 -18.47604 -16.88852 -16.36688 -16.10702 -15.81119 -15.66582 -14.99786 -14.55307 -14.39952 -14.16514 -14.09956 -13.48364 -12.97469 -12.65060 -12.50261 -12.44562 -12.03076 -11.87652 -11.62246 -11.60609 -11.35474 -11.12595 -11.04252 -10.90527 -10.79750 -10.74414 -10.60490 -10.28950 -10.20873 -10.06808 -9.29130 -9.18436 -8.78143 -8.63711 -8.47080 -7.68964 -6.11512 -4.19618 1.65257 2.59491 2.65493 3.25241 3.31965 3.33762 3.73663 3.79329 3.85754 4.35977 4.43655 4.79315 4.85846 4.90213 4.99479 5.10678 5.20213 5.27535 5.35301 5.39553 5.55980 5.61803 5.71065 5.73195 5.75704 5.90928 5.96301 6.00271 6.06628 6.14866 6.23963 6.26787 6.65826 6.71528 6.77110 6.97666 6.98685 7.33369 7.42961 7.66043 7.94825 8.12054 8.28011 8.41431 8.74596 8.91735 9.46933 10.93860 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.004728 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.510950 B = 5920.557549 C = 6793.649780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.259 5.259 4 N -0.281 5.281 5 C 0.045 3.955 6 C -0.068 4.068 7 C -0.167 4.167 8 C -0.169 4.169 9 C -0.207 4.207 10 C -0.016 4.016 11 C 0.572 3.428 12 O -0.551 6.551 13 N -0.570 5.570 14 C 0.066 3.934 15 C 0.259 3.741 16 H 0.066 0.934 17 C -0.148 4.148 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.176 0.824 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.096 0.904 42 H 0.012 0.988 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 3.482 -15.574 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 N -0.046 5.046 4 N -0.113 5.113 5 C -0.111 4.111 6 C -0.088 4.088 7 C -0.205 4.205 8 C -0.207 4.207 9 C -0.235 4.235 10 C -0.144 4.144 11 C 0.358 3.642 12 O -0.431 6.431 13 N -0.300 5.300 14 C -0.077 4.077 15 C 0.160 3.840 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.193 0.807 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.114 0.886 42 H 0.031 0.969 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.802 1.959 -16.098 16.657 hybrid contribution -0.464 1.250 1.193 1.789 sum 3.338 3.208 -14.905 15.608 Atomic orbital electron populations 1.22069 0.93466 1.03536 1.02946 1.22025 0.96281 0.76595 1.04960 1.45740 1.44655 1.12253 1.01957 1.72975 1.17856 1.06668 1.13851 1.20972 1.04838 0.92483 0.92839 1.19961 1.01976 0.87163 0.99662 1.23010 1.01475 0.95859 1.00148 1.22987 0.95657 1.02536 0.99533 1.22846 1.07591 0.98519 0.94511 1.21786 1.09001 0.93103 0.90554 1.16950 0.80291 0.84351 0.82645 1.90738 1.43000 1.24963 1.84417 1.47989 1.53813 1.20345 1.07862 1.22281 0.96655 0.86787 1.02021 1.19042 0.93774 0.97969 0.73238 0.91650 1.22111 0.96681 0.97860 1.03947 1.21296 1.32632 1.06307 0.96240 0.92179 1.24880 0.95918 0.95817 0.97075 1.69876 1.45237 1.27247 1.10206 0.86477 0.80570 0.81711 0.78538 1.20609 1.21088 1.19865 0.92452 0.90324 0.90833 0.88808 0.87238 0.86733 0.88202 0.88232 0.88532 0.88733 0.80677 0.92861 0.90391 0.90970 0.94912 0.88598 0.96885 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.11 37.15 0.38 -1.81 16 2 C 0.12 1.72 6.31 -4.04 -0.03 1.69 16 3 N -0.26 -4.32 3.35 -57.14 -0.19 -4.51 16 4 N -0.28 -4.56 11.90 33.64 0.40 -4.16 16 5 C 0.05 0.67 6.85 -82.47 -0.57 0.10 16 6 C -0.07 -0.76 6.33 -91.77 -0.58 -1.34 16 7 C -0.17 -1.53 10.03 -26.69 -0.27 -1.80 16 8 C -0.17 -1.65 10.24 -26.69 -0.27 -1.93 16 9 C -0.21 -3.20 8.13 -38.98 -0.32 -3.52 16 10 C -0.02 -0.29 6.78 -82.06 -0.56 -0.84 16 11 C 0.57 12.14 7.64 -12.64 -0.10 12.05 16 12 O -0.55 -13.01 13.61 5.25 0.07 -12.93 16 13 N -0.57 -12.17 2.75 -176.64 -0.49 -12.66 16 14 C 0.07 1.11 7.93 59.85 0.47 1.59 16 15 C 0.26 6.50 2.62 -69.08 -0.18 6.31 16 16 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 17 C -0.15 -3.45 8.96 37.16 0.33 -3.12 16 18 C -0.53 -13.97 8.37 -34.44 -0.29 -14.26 16 19 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 22 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.21 7.53 -51.93 -0.39 0.82 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.11 1.66 6.86 -51.93 -0.36 1.31 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 0.94 7.21 -51.93 -0.37 0.57 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.18 2.36 4.08 -52.49 -0.21 2.14 16 37 H 0.05 0.85 7.61 -51.93 -0.40 0.45 16 38 H 0.08 1.31 6.45 -51.93 -0.33 0.98 16 39 H 0.07 1.04 4.96 -51.93 -0.26 0.78 16 40 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 41 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -30.69 344.81 -7.73 -38.42 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.26 Total: 4.11 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.06 Total: -5.21 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.35 Total: -45.33 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.69 -7.73 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906565227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.031 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds