Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47074 * 2 1 4 4 N 1.28441 * 125.19184 * 265.21682 * 3 2 1 5 5 C 1.30866 * 110.92213 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.06532 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.50024 * 163.77110 * 6 5 4 8 8 C 1.53003 * 117.49823 * 95.10919 * 6 5 4 9 9 C 1.39668 * 107.86454 * 359.74183 * 5 4 3 10 10 C 1.36599 * 125.18307 * 85.19574 * 3 2 1 11 11 C 1.47157 * 126.88913 * 0.02562 * 10 3 2 12 12 O 1.21626 * 120.00213 * 349.63987 * 11 10 3 13 13 N 1.34785 * 120.00258 * 169.64240 * 11 10 3 14 14 C 1.46503 * 119.99753 * 0.22551 * 13 11 10 15 15 C 1.46495 * 119.99953 * 180.22791 * 13 11 10 16 16 H 1.08994 * 109.47328 * 359.97438 * 15 13 11 17 17 C 1.52998 * 109.47086 * 120.00231 * 15 13 11 18 18 C 1.50703 * 109.47005 * 240.00099 * 15 13 11 19 19 H 1.07999 * 120.00121 * 359.97438 * 18 15 13 20 20 C 1.37874 * 120.00082 * 180.02562 * 18 15 13 21 21 N 1.31518 * 119.99946 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 120.00257 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47141 * 89.99512 * 22 20 18 24 24 H 1.48495 * 109.47547 * 210.00054 * 22 20 18 25 25 H 1.48505 * 109.47080 * 329.99906 * 22 20 18 26 26 H 1.09000 * 109.47712 * 65.01319 * 1 2 3 27 27 H 1.09000 * 109.47160 * 185.01372 * 1 2 3 28 28 H 1.09001 * 109.47210 * 305.01380 * 1 2 3 29 29 H 1.09003 * 109.47309 * 240.00510 * 2 1 3 30 30 H 1.08995 * 109.47535 * 120.00596 * 2 1 3 31 31 H 1.09000 * 115.55300 * 309.44329 * 6 5 4 32 32 H 1.08993 * 117.49537 * 0.02562 * 7 6 5 33 33 H 1.08997 * 117.49763 * 145.01689 * 7 6 5 34 34 H 1.08998 * 117.50186 * 214.97483 * 8 6 5 35 35 H 1.08999 * 117.49920 * 359.97438 * 8 6 5 36 36 H 1.07999 * 127.32232 * 180.30567 * 9 5 4 37 37 H 1.09004 * 109.46788 * 83.20774 * 14 13 11 38 38 H 1.08993 * 109.46600 * 203.20549 * 14 13 11 39 39 H 1.08999 * 109.47171 * 323.21094 * 14 13 11 40 40 H 1.08994 * 109.47282 * 59.99672 * 17 15 13 41 41 H 1.09004 * 109.47052 * 180.02562 * 17 15 13 42 42 H 1.09003 * 109.46942 * 299.99698 * 17 15 13 43 43 H 0.97001 * 119.99762 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3475 2.0500 -1.0460 5 6 2.7444 3.2549 -0.7246 6 6 3.2071 4.3217 -1.6831 7 6 3.2651 5.7601 -1.1649 8 6 2.1722 5.3459 -2.1534 9 6 2.6580 3.3783 0.6639 10 6 2.1925 2.1545 1.1125 11 6 1.9314 1.7663 2.5078 12 8 1.3424 0.7303 2.7508 13 7 2.3450 2.5589 3.5165 14 6 3.0501 3.8092 3.2237 15 6 2.0895 2.1699 4.9056 16 1 1.5581 1.2185 4.9246 17 6 3.4196 2.0269 5.6480 18 6 1.2506 3.2267 5.5769 19 1 0.9393 4.1008 5.0242 20 6 0.8814 3.0781 6.8969 21 7 1.2609 2.0139 7.5701 22 14 -0.1578 4.3882 7.7293 23 1 -1.5965 4.0673 7.5492 24 1 0.1629 4.4277 9.1787 25 1 0.1339 5.7115 7.1216 26 1 -0.3634 0.4341 -0.9314 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3634 0.5896 0.8417 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9702 4.0130 -2.3975 32 1 2.9691 5.9346 -0.1305 33 1 4.0663 6.3977 -1.5385 34 1 2.2548 5.7113 -3.1770 35 1 1.1566 5.2477 -1.7698 36 1 2.9040 4.2440 1.2609 37 1 2.3245 4.5933 3.0071 38 1 3.6507 4.0981 4.0861 39 1 3.6994 3.6665 2.3599 40 1 3.9505 2.9785 5.6289 41 1 3.2295 1.7370 6.6815 42 1 4.0263 1.2625 5.1624 43 1 1.0008 1.9092 8.4987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906565227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = 66.053545 kcal Electronic energy + Delta-G solvation = -23961.879861 eV Core-core repulsion = 20623.880948 eV Total energy + Delta-G solvation = -3337.998913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.65630 -40.50730 -38.15768 -37.25881 -35.36628 -34.75870 -32.61853 -30.67885 -30.56591 -28.03302 -27.30430 -25.55827 -24.76025 -23.67019 -23.09475 -22.02956 -21.19474 -19.74231 -18.59037 -18.01077 -17.65866 -17.13365 -17.00019 -16.48964 -15.87726 -15.77677 -15.62243 -15.18797 -14.83384 -14.60616 -14.23788 -13.99872 -13.68582 -13.51808 -13.13582 -12.99867 -12.86467 -12.83703 -12.75075 -12.52990 -12.29687 -12.19908 -12.17161 -12.10850 -11.81590 -11.45343 -11.21050 -11.09626 -10.90189 -10.52566 -10.11076 -9.80128 -9.39515 -8.15421 -6.31683 0.26402 1.35818 1.42426 1.44059 1.50136 1.53802 2.18783 2.26410 2.46213 2.98687 3.13212 3.39410 3.49828 3.83003 3.98208 4.04767 4.12733 4.24472 4.26885 4.35815 4.36962 4.47420 4.63097 4.64868 4.71591 4.72511 4.87208 4.87976 4.90237 4.99993 5.03177 5.09200 5.11360 5.29666 5.37802 5.43008 5.48302 5.58497 5.63952 5.75509 5.99182 6.13072 6.65327 6.74186 7.05220 7.19517 7.40972 8.89105 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.004728 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.510950 B = 5920.557549 C = 6793.649780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.116 3.884 3 N -0.264 5.264 4 N -0.288 5.288 5 C 0.047 3.953 6 C -0.087 4.087 7 C -0.153 4.153 8 C -0.166 4.166 9 C -0.194 4.194 10 C -0.044 4.044 11 C 0.565 3.435 12 O -0.588 6.588 13 N -0.578 5.578 14 C 0.063 3.937 15 C 0.265 3.735 16 H 0.015 0.985 17 C -0.134 4.134 18 C -0.538 4.538 19 H 0.061 0.939 20 C 0.018 3.982 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.035 0.965 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.020 0.980 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 5.863 -17.329 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 N -0.052 5.052 4 N -0.120 5.120 5 C -0.109 4.109 6 C -0.107 4.107 7 C -0.190 4.190 8 C -0.204 4.204 9 C -0.222 4.222 10 C -0.172 4.172 11 C 0.353 3.647 12 O -0.470 6.470 13 N -0.307 5.307 14 C -0.078 4.078 15 C 0.163 3.837 16 H 0.033 0.967 17 C -0.192 4.192 18 C -0.577 4.577 19 H 0.079 0.921 20 C -0.182 4.182 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.210 1.210 24 H -0.205 1.205 25 H -0.185 1.185 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.055 0.945 29 H 0.141 0.859 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.213 0.787 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.609 4.363 -17.874 18.968 hybrid contribution -0.713 0.482 1.657 1.867 sum 3.896 4.846 -16.217 17.368 Atomic orbital electron populations 1.21996 0.93067 1.04341 1.01683 1.22174 0.96607 0.76017 1.05527 1.45958 1.44753 1.12831 1.01617 1.72994 1.17993 1.07457 1.13598 1.21562 1.03541 0.92648 0.93188 1.20133 1.03285 0.87136 1.00097 1.23149 1.01608 0.94211 1.00031 1.23048 0.94812 1.01592 1.00968 1.23122 1.05995 0.97946 0.95184 1.21453 1.11656 0.94748 0.89324 1.17379 0.79559 0.83784 0.83982 1.90706 1.44537 1.26555 1.85242 1.47932 1.54347 1.21905 1.06538 1.22530 0.97013 0.85057 1.03228 1.18650 0.93944 0.95491 0.75578 0.96710 1.21903 0.96125 0.98977 1.02200 1.21532 1.33058 1.06478 0.96599 0.92118 1.25687 0.96972 0.97765 0.97737 1.70013 1.46153 1.28845 1.10450 0.85473 0.78401 0.79588 0.77668 1.21000 1.20495 1.18517 0.91454 0.88071 0.94543 0.85857 0.88945 0.85441 0.88417 0.85715 0.86400 0.90220 0.78664 0.91599 0.90202 0.88249 0.93051 0.91026 0.96103 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 10.11 71.98 0.73 -3.43 16 2 C 0.12 3.30 6.31 86.38 0.54 3.85 16 3 N -0.26 -8.73 3.35 -334.70 -1.12 -9.85 16 4 N -0.29 -8.93 11.90 -47.50 -0.57 -9.50 16 5 C 0.05 1.29 6.85 43.05 0.30 1.59 16 6 C -0.09 -1.69 6.33 -11.54 -0.07 -1.76 16 7 C -0.15 -2.22 10.03 30.62 0.31 -1.91 16 8 C -0.17 -2.73 10.24 30.62 0.31 -2.42 16 9 C -0.19 -5.69 8.13 22.66 0.18 -5.50 16 10 C -0.04 -1.57 6.78 40.79 0.28 -1.30 16 11 C 0.57 24.73 7.64 86.58 0.66 25.39 16 12 O -0.59 -29.39 13.61 -4.11 -0.06 -29.45 16 13 N -0.58 -24.96 2.75 -831.00 -2.29 -27.24 16 14 C 0.06 2.04 7.93 127.77 1.01 3.05 16 15 C 0.26 13.66 2.62 44.25 0.12 13.78 16 16 H 0.01 0.91 6.90 -2.39 -0.02 0.90 16 17 C -0.13 -6.34 8.96 71.98 0.64 -5.70 16 18 C -0.54 -28.90 8.37 25.60 0.21 -28.69 16 19 H 0.06 3.18 7.65 -2.91 -0.02 3.15 16 20 C 0.02 0.98 5.30 84.65 0.45 1.43 16 21 N -0.92 -51.98 11.32 21.45 0.24 -51.74 16 22 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.04 1.25 7.53 -2.39 -0.02 1.24 16 29 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.09 2.95 6.86 -2.39 -0.02 2.93 16 31 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 1.48 7.21 -2.39 -0.02 1.46 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.20 4.71 4.08 -2.91 -0.01 4.70 16 37 H 0.07 1.95 7.61 -2.39 -0.02 1.94 16 38 H 0.08 2.54 6.45 -2.39 -0.02 2.52 16 39 H 0.10 2.64 4.96 -2.39 -0.01 2.62 16 40 H 0.05 2.19 6.67 -2.39 -0.02 2.17 16 41 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -68.61 344.81 4.93 -63.68 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.02 Total: 21.17 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.67 Total: -1.62 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -3.73 Total: -98.33 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.06 Total: -29.45 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.61 4.93 -63.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906565227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.729 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds