Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46738 * 2 1 4 4 N 1.28452 * 125.18737 * 264.35895 * 3 2 1 5 5 C 1.30863 * 110.92453 * 180.27933 * 4 3 2 6 6 C 1.50695 * 126.06936 * 179.68055 * 5 4 3 7 7 C 1.52995 * 117.49978 * 163.78972 * 6 5 4 8 8 C 1.53005 * 117.50042 * 95.13014 * 6 5 4 9 9 C 1.39670 * 107.86186 * 359.71707 * 5 4 3 10 10 C 1.36597 * 125.19194 * 84.14971 * 3 2 1 11 11 C 1.47156 * 126.88438 * 359.97438 * 10 3 2 12 12 O 1.21629 * 119.99687 * 6.51374 * 11 10 3 13 13 N 1.34778 * 119.99943 * 186.50489 * 11 10 3 14 14 C 1.46495 * 120.00162 * 5.49686 * 13 11 10 15 15 C 1.46500 * 119.99977 * 185.49055 * 13 11 10 16 16 H 1.09008 * 109.46799 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.47385 * 240.00499 * 15 13 11 18 18 C 1.50700 * 109.47242 * 119.99920 * 15 13 11 19 19 H 1.07997 * 119.99778 * 0.02562 * 18 15 13 20 20 C 1.37879 * 120.00023 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99800 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99858 * 180.02562 * 20 18 15 23 23 H 1.48504 * 109.47226 * 59.99989 * 22 20 18 24 24 H 1.48501 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47066 * 300.00110 * 22 20 18 26 26 H 1.08997 * 109.47310 * 64.97782 * 1 2 3 27 27 H 1.09008 * 109.46682 * 184.97330 * 1 2 3 28 28 H 1.09001 * 109.47510 * 304.96737 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99930 * 2 1 3 30 30 H 1.08999 * 109.47394 * 119.99684 * 2 1 3 31 31 H 1.09006 * 115.54860 * 309.46063 * 6 5 4 32 32 H 1.09000 * 117.50317 * 359.97438 * 7 6 5 33 33 H 1.09006 * 117.49800 * 145.01802 * 7 6 5 34 34 H 1.09001 * 117.49912 * 214.97843 * 8 6 5 35 35 H 1.09001 * 117.49440 * 359.97438 * 8 6 5 36 36 H 1.08005 * 127.31990 * 179.97438 * 9 5 4 37 37 H 1.09000 * 109.46617 * 275.73438 * 14 13 11 38 38 H 1.08998 * 109.47471 * 155.73262 * 14 13 11 39 39 H 1.09000 * 109.47080 * 35.72769 * 14 13 11 40 40 H 1.08998 * 109.47096 * 179.97438 * 17 15 13 41 41 H 1.09002 * 109.46581 * 299.99924 * 17 15 13 42 42 H 1.08997 * 109.46813 * 59.99936 * 17 15 13 43 43 H 0.97007 * 119.99693 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.3622 2.0448 -1.0447 5 6 2.7606 3.2491 -0.7233 6 6 3.2445 4.3084 -1.6797 7 6 3.3027 5.7490 -1.1679 8 6 2.2232 5.3360 -2.1715 9 6 2.6585 3.3783 0.6637 10 6 2.1733 2.1614 1.1105 11 6 1.8873 1.7822 2.5033 12 8 1.5800 0.6361 2.7706 13 7 1.9661 2.7048 3.4827 14 6 2.2177 4.1086 3.1480 15 6 1.7999 2.3037 4.8819 16 1 1.6225 1.2294 4.9332 17 6 0.6079 3.0474 5.4876 18 6 3.0490 2.6436 5.6536 19 1 3.8829 3.1119 5.1520 20 6 3.1266 2.3576 7.0001 21 7 2.1108 1.7878 7.6109 22 14 4.6745 2.7795 7.9568 23 1 4.9166 4.2430 7.8863 24 1 4.5062 2.3729 9.3751 25 1 5.8317 2.0576 7.3694 26 1 -0.3634 0.4347 -0.9312 27 1 -0.3633 -1.0239 0.0891 28 1 -0.3634 0.5890 0.8421 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.0171 3.9916 -2.3804 32 1 2.9905 5.9308 -0.1395 33 1 4.1134 6.3802 -1.5321 34 1 2.3241 5.6956 -3.1955 35 1 1.2011 5.2456 -1.8035 36 1 2.9059 4.2436 1.2607 37 1 3.2902 4.2692 3.0381 38 1 1.8346 4.7464 3.9446 39 1 1.7156 4.3547 2.2124 40 1 0.4840 2.7487 6.5285 41 1 0.7857 4.1216 5.4361 42 1 -0.2954 2.8015 4.9294 43 1 2.1656 1.5862 8.5583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906565229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = 64.757495 kcal Electronic energy + Delta-G solvation = -23967.214472 eV Core-core repulsion = 20629.159358 eV Total energy + Delta-G solvation = -3338.055114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.65239 -40.51437 -38.15693 -37.26323 -35.35986 -34.76662 -32.61307 -30.67296 -30.56630 -28.04635 -27.30166 -25.55692 -24.75378 -23.65909 -23.08482 -22.04460 -21.18944 -19.77662 -18.54645 -17.99655 -17.68139 -17.07444 -17.02141 -16.48747 -15.94525 -15.77002 -15.60481 -15.19143 -14.81585 -14.63109 -14.24382 -14.00650 -13.65404 -13.51421 -13.17375 -13.01651 -12.84587 -12.82087 -12.74748 -12.51184 -12.32602 -12.21994 -12.15879 -12.12530 -11.83212 -11.44776 -11.22242 -11.08916 -10.90154 -10.51825 -10.12556 -9.78728 -9.40170 -8.15092 -6.31692 0.25492 1.35978 1.43608 1.45538 1.50283 1.53078 2.17995 2.28093 2.46337 2.99457 3.13393 3.38377 3.50489 3.82647 3.97143 4.04494 4.13304 4.25357 4.28120 4.34498 4.37617 4.47660 4.62179 4.64890 4.71358 4.72410 4.87498 4.87990 4.91008 4.99414 5.03187 5.05251 5.11793 5.29673 5.38438 5.42883 5.48279 5.58266 5.63807 5.75542 5.99462 6.12746 6.64873 6.73963 7.05180 7.18729 7.40922 8.89222 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.004723 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.148190 B = 5926.989730 C = 6903.721420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 N -0.263 5.263 4 N -0.288 5.288 5 C 0.047 3.953 6 C -0.091 4.091 7 C -0.154 4.154 8 C -0.162 4.162 9 C -0.193 4.193 10 C -0.045 4.045 11 C 0.567 3.433 12 O -0.590 6.590 13 N -0.579 5.579 14 C 0.067 3.933 15 C 0.266 3.734 16 H 0.014 0.986 17 C -0.133 4.133 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.019 3.981 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.261 1.261 24 H -0.284 1.284 25 H -0.279 1.279 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.036 0.964 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.196 0.804 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.019 0.981 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 7.487 -17.536 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 N -0.051 5.051 4 N -0.121 5.121 5 C -0.109 4.109 6 C -0.110 4.110 7 C -0.191 4.191 8 C -0.199 4.199 9 C -0.221 4.221 10 C -0.173 4.173 11 C 0.355 3.645 12 O -0.472 6.472 13 N -0.308 5.308 14 C -0.075 4.075 15 C 0.164 3.836 16 H 0.032 0.968 17 C -0.192 4.192 18 C -0.578 4.578 19 H 0.080 0.920 20 C -0.181 4.181 21 N -0.554 5.554 22 Si 0.789 3.211 23 H -0.186 1.186 24 H -0.209 1.209 25 H -0.204 1.204 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.055 0.945 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.212 0.788 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.218 5.954 -18.068 19.025 hybrid contribution 0.656 0.022 1.688 1.811 sum 0.438 5.975 -16.380 17.442 Atomic orbital electron populations 1.21996 0.92701 1.04420 1.01809 1.22248 0.96836 0.76097 1.05705 1.45957 1.44726 1.12663 1.01780 1.72997 1.17880 1.07531 1.13677 1.21554 1.03461 0.92663 0.93253 1.20127 1.03292 0.87334 1.00270 1.23155 1.01778 0.94053 1.00132 1.23052 0.95084 1.01116 1.00686 1.23119 1.05736 0.98025 0.95237 1.21450 1.11895 0.94521 0.89424 1.17366 0.78092 0.85080 0.83963 1.90689 1.51609 1.20798 1.84115 1.47922 1.67250 1.08689 1.06925 1.22461 1.01727 0.80792 1.02506 1.18648 0.94867 0.94725 0.75336 0.96774 1.21898 0.95544 0.99518 1.02209 1.21510 1.00688 1.41335 0.94316 0.92017 1.25693 0.99473 0.94560 0.98406 1.70009 1.32013 1.42346 1.11076 0.85517 0.79163 0.79194 0.77191 1.18554 1.20935 1.20447 0.91192 0.87998 0.94494 0.86051 0.88773 0.85802 0.88175 0.85987 0.86495 0.89740 0.78753 0.91410 0.90180 0.88700 0.91037 0.93066 0.96205 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.11 3.17 6.41 86.38 0.55 3.73 16 3 N -0.26 -8.78 3.35 -334.69 -1.12 -9.90 16 4 N -0.29 -9.02 11.90 -47.50 -0.57 -9.59 16 5 C 0.05 1.30 6.85 43.05 0.30 1.60 16 6 C -0.09 -1.78 6.33 -11.54 -0.07 -1.86 16 7 C -0.15 -2.22 10.02 30.62 0.31 -1.91 16 8 C -0.16 -2.52 10.24 30.62 0.31 -2.21 16 9 C -0.19 -5.69 8.15 22.66 0.18 -5.51 16 10 C -0.04 -1.62 6.79 40.79 0.28 -1.35 16 11 C 0.57 24.88 7.64 86.58 0.66 25.54 16 12 O -0.59 -29.52 14.14 -4.12 -0.06 -29.57 16 13 N -0.58 -24.99 2.75 -830.99 -2.29 -27.28 16 14 C 0.07 2.14 7.88 127.77 1.01 3.15 16 15 C 0.27 13.71 2.62 44.25 0.12 13.83 16 16 H 0.01 0.88 6.91 -2.38 -0.02 0.86 16 17 C -0.13 -6.34 8.96 71.98 0.64 -5.70 16 18 C -0.54 -28.92 8.37 25.60 0.21 -28.70 16 19 H 0.06 3.21 7.65 -2.91 -0.02 3.18 16 20 C 0.02 1.00 5.30 84.66 0.45 1.45 16 21 N -0.92 -51.93 11.32 21.45 0.24 -51.69 16 22 Si 0.96 42.38 29.54 68.60 2.03 44.41 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.09 3.13 6.53 -2.39 -0.02 3.11 16 31 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.10 1.45 7.22 -2.39 -0.02 1.43 16 33 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.20 4.73 4.03 -2.91 -0.01 4.72 16 37 H 0.07 2.00 7.44 -2.39 -0.02 1.98 16 38 H 0.08 2.53 6.44 -2.39 -0.02 2.51 16 39 H 0.09 2.51 5.25 -2.39 -0.01 2.50 16 40 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 41 H 0.05 2.19 6.67 -2.39 -0.02 2.17 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -68.49 345.92 4.94 -63.55 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.02 Total: 21.18 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.69 Total: -1.11 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.73 Total: -98.46 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.06 Total: -29.57 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -68.49 4.94 -63.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906565229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.309 kcal (2) G-P(sol) polarization free energy of solvation -68.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds