Wall clock time and date at job start Tue Mar 31 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47622 * 2 1 4 4 C 1.46496 * 119.99917 * 270.00594 * 3 2 1 5 5 C 1.50703 * 109.46980 * 269.99302 * 4 3 2 6 6 H 1.08000 * 119.99807 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00407 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99713 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00266 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47165 * 60.00864 * 9 7 5 11 11 H 1.48498 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47400 * 300.00347 * 9 7 5 13 13 C 1.34778 * 119.99447 * 90.00221 * 3 2 1 14 14 O 1.21282 * 119.99596 * 180.02562 * 13 3 2 15 15 C 1.50690 * 120.00279 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47354 * 173.90343 * 15 13 3 17 17 C 1.46953 * 110.99670 * 293.69904 * 16 15 13 18 18 C 1.53367 * 109.78358 * 164.63212 * 17 16 15 19 19 N 1.46805 * 108.21219 * 50.17973 * 18 17 16 20 20 C 1.35723 * 128.03115 * 163.41008 * 19 18 17 21 21 C 1.35070 * 108.16795 * 180.21144 * 20 19 18 22 22 C 1.41106 * 107.48399 * 359.93912 * 21 20 19 23 23 C 1.34122 * 107.32153 * 359.95352 * 22 21 20 24 24 C 1.47354 * 110.99975 * 169.54720 * 16 15 13 25 25 H 1.09001 * 109.46897 * 59.99455 * 1 2 3 26 26 H 1.08996 * 109.47729 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46963 * 299.99859 * 1 2 3 28 28 H 1.09005 * 109.46629 * 240.00115 * 2 1 3 29 29 H 1.08996 * 109.47306 * 120.00434 * 2 1 3 30 30 H 1.08998 * 109.47593 * 29.99417 * 4 3 2 31 31 H 1.09004 * 109.47089 * 150.00061 * 4 3 2 32 32 H 0.96996 * 119.99884 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47187 * 53.90427 * 15 13 3 34 34 H 1.09001 * 109.47183 * 293.90398 * 15 13 3 35 35 H 1.09000 * 109.42230 * 44.53236 * 17 16 15 36 36 H 1.09001 * 109.41687 * 284.72289 * 17 16 15 37 37 H 1.09004 * 109.71360 * 169.85840 * 18 17 16 38 38 H 1.08995 * 109.71158 * 290.45965 * 18 17 16 39 39 H 1.07997 * 125.91861 * 0.18012 * 20 19 18 40 40 H 1.07993 * 126.26035 * 179.90388 * 21 20 19 41 41 H 1.07993 * 126.33937 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.76843 * 54.59285 * 24 16 15 43 43 H 1.09000 * 109.78519 * 293.86508 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6182 9 14 5.9135 2.0966 -3.4169 10 1 6.1417 0.6399 -3.5938 11 1 6.1610 2.7965 -4.7030 12 1 6.8407 2.6209 -2.3822 13 6 2.2431 2.0164 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.4462 2.1506 3.5850 17 6 3.9062 2.3151 3.5586 18 6 4.3138 3.4807 4.4682 19 7 3.6693 3.2911 5.7735 20 6 3.9787 3.8869 6.9531 21 6 3.1337 3.4172 7.8964 22 6 2.2684 2.4956 7.2695 23 6 2.6154 2.4389 5.9752 24 6 1.9956 1.6073 4.8785 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6878 -2.0284 31 1 2.0956 3.1411 -1.1383 32 1 3.6752 3.5161 -4.4440 33 1 2.5385 0.3635 2.4843 34 1 0.9247 1.1086 2.5785 35 1 4.2293 2.5215 2.5382 36 1 4.3806 1.3986 3.9095 37 1 5.3969 3.4901 4.5907 38 1 3.9853 4.4224 4.0285 39 1 4.7647 4.6106 7.1105 40 1 3.1226 3.6957 8.9398 41 1 1.4737 1.9392 7.7440 42 1 2.3179 0.5706 4.9754 43 1 0.9089 1.6628 4.9436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932528914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:03 Heat of formation + Delta-G solvation = 32.967226 kcal Electronic energy + Delta-G solvation = -23672.510582 eV Core-core repulsion = 20333.076939 eV Total energy + Delta-G solvation = -3339.433643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43953 -39.33087 -36.96430 -35.21775 -33.25491 -32.81193 -30.51476 -30.08694 -28.80890 -27.64147 -26.09710 -24.41890 -23.09793 -22.77725 -21.66393 -20.42763 -18.59353 -18.34750 -17.12372 -16.63731 -16.39315 -15.82927 -15.53592 -15.18843 -14.64634 -14.29874 -14.10881 -13.75435 -13.60503 -13.41694 -13.36672 -12.87580 -12.61259 -12.22871 -12.12676 -12.04509 -11.86410 -11.80880 -11.60618 -11.36920 -11.20761 -11.16022 -10.95382 -10.74059 -10.55410 -10.15894 -9.68568 -8.99742 -8.54927 -8.46832 -8.36921 -7.90681 -7.69077 -6.07709 -4.12919 2.32071 2.95186 3.05667 3.27833 3.32451 3.33267 3.39924 3.54361 4.08560 4.40854 4.61469 4.73482 4.88431 5.04998 5.13051 5.15974 5.25149 5.27395 5.32812 5.35167 5.44529 5.49235 5.60173 5.61530 5.68531 5.75392 5.82399 5.86221 5.99472 6.19793 6.29000 6.32478 6.44703 6.73795 6.85499 7.06140 7.12953 7.28823 7.42263 7.46534 7.51816 7.88585 8.19926 8.39476 8.86423 9.07606 9.52300 11.00254 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.004014 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.456867 B = 6973.567594 C = 7993.653804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.524 6.524 15 C 0.037 3.963 16 N -0.521 5.521 17 C 0.042 3.958 18 C 0.113 3.887 19 N -0.439 5.439 20 C -0.011 4.011 21 C -0.209 4.209 22 C -0.196 4.196 23 C 0.020 3.980 24 C 0.124 3.876 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.051 0.949 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -5.952 16.918 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.245 5.245 17 C -0.086 4.086 18 C -0.008 4.008 19 N -0.114 5.114 20 C -0.142 4.142 21 C -0.234 4.234 22 C -0.221 4.221 23 C -0.092 4.092 24 C -0.004 4.004 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.176 0.824 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.068 0.932 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.367 -4.682 16.302 17.126 hybrid contribution 1.313 -0.940 -0.294 1.642 sum -1.054 -5.623 16.008 17.000 Atomic orbital electron populations 1.22220 0.96714 1.01418 1.02414 1.21426 0.93593 0.84276 1.02584 1.48281 1.63932 1.13206 1.07685 1.19247 0.96152 0.93658 0.78040 1.21380 0.96949 1.32011 1.06303 0.92654 1.24931 0.97792 0.94926 0.96391 1.69921 1.35713 1.33277 1.14344 0.86576 0.84816 0.78234 0.77877 1.20275 1.21144 1.20245 1.20069 0.79076 0.87108 0.84665 1.90663 1.44964 1.17573 1.86821 1.22099 1.02190 0.94532 0.90542 1.61694 1.12083 1.49366 1.01395 1.22462 0.87814 0.96171 1.02175 1.22093 0.97288 1.01123 0.80283 1.44254 1.26146 1.33014 1.08035 1.21645 1.04216 1.03620 0.84673 1.20866 1.00166 1.03527 0.98855 1.20340 1.04051 1.05079 0.92619 1.20265 0.94042 0.99418 0.95502 1.20848 1.00131 0.94486 0.84916 0.91975 0.92173 0.93043 0.89937 0.91938 0.95062 0.93878 0.92630 0.92294 0.88021 0.86905 0.94363 0.89395 0.88826 0.82410 0.84953 0.84934 0.93155 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.15 0.38 -1.77 16 2 C 0.11 1.60 5.95 -4.04 -0.02 1.57 16 3 N -0.60 -12.07 2.46 -175.06 -0.43 -12.50 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.01 7.08 -10.99 -0.08 9.93 16 14 O -0.52 -12.63 14.41 5.56 0.08 -12.55 16 15 C 0.04 0.54 4.18 -4.98 -0.02 0.51 16 16 N -0.52 -7.69 4.35 -236.69 -1.03 -8.72 16 17 C 0.04 0.61 5.12 -3.61 -0.02 0.59 16 18 C 0.11 1.50 7.23 -3.69 -0.03 1.47 16 19 N -0.44 -5.99 3.15 -112.13 -0.35 -6.34 16 20 C -0.01 -0.13 11.55 -16.96 -0.20 -0.33 16 21 C -0.21 -2.55 10.87 -39.62 -0.43 -2.98 16 22 C -0.20 -2.49 10.81 -39.94 -0.43 -2.92 16 23 C 0.02 0.27 6.64 -81.60 -0.54 -0.27 16 24 C 0.12 1.52 5.82 -4.61 -0.03 1.49 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.62 7.41 -51.93 -0.38 0.23 16 28 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 29 H 0.06 0.77 6.27 -51.93 -0.33 0.45 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.06 0.75 7.05 -51.93 -0.37 0.38 16 34 H 0.10 1.24 7.34 -51.93 -0.38 0.86 16 35 H 0.11 1.95 6.03 -51.93 -0.31 1.64 16 36 H 0.04 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -33.09 348.89 -9.39 -42.47 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.76 Total: 1.11 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.86 Total: 0.34 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -1.08 Total: -53.05 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.09 -9.39 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932528914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.438 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds