Wall clock time and date at job start Tue Mar 31 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47622 * 2 1 4 4 C 1.46496 * 119.99917 * 270.00594 * 3 2 1 5 5 C 1.50703 * 109.46980 * 269.99302 * 4 3 2 6 6 H 1.08000 * 119.99807 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00407 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99713 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00266 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47165 * 60.00864 * 9 7 5 11 11 H 1.48498 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47400 * 300.00347 * 9 7 5 13 13 C 1.34778 * 119.99447 * 90.00221 * 3 2 1 14 14 O 1.21282 * 119.99596 * 180.02562 * 13 3 2 15 15 C 1.50690 * 120.00279 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47354 * 173.90343 * 15 13 3 17 17 C 1.46953 * 110.99670 * 293.69904 * 16 15 13 18 18 C 1.53367 * 109.78358 * 164.63212 * 17 16 15 19 19 N 1.46805 * 108.21219 * 50.17973 * 18 17 16 20 20 C 1.35723 * 128.03115 * 163.41008 * 19 18 17 21 21 C 1.35070 * 108.16795 * 180.21144 * 20 19 18 22 22 C 1.41106 * 107.48399 * 359.93912 * 21 20 19 23 23 C 1.34122 * 107.32153 * 359.95352 * 22 21 20 24 24 C 1.47354 * 110.99975 * 169.54720 * 16 15 13 25 25 H 1.09001 * 109.46897 * 59.99455 * 1 2 3 26 26 H 1.08996 * 109.47729 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46963 * 299.99859 * 1 2 3 28 28 H 1.09005 * 109.46629 * 240.00115 * 2 1 3 29 29 H 1.08996 * 109.47306 * 120.00434 * 2 1 3 30 30 H 1.08998 * 109.47593 * 29.99417 * 4 3 2 31 31 H 1.09004 * 109.47089 * 150.00061 * 4 3 2 32 32 H 0.96996 * 119.99884 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47187 * 53.90427 * 15 13 3 34 34 H 1.09001 * 109.47183 * 293.90398 * 15 13 3 35 35 H 1.09000 * 109.42230 * 44.53236 * 17 16 15 36 36 H 1.09001 * 109.41687 * 284.72289 * 17 16 15 37 37 H 1.09004 * 109.71360 * 169.85840 * 18 17 16 38 38 H 1.08995 * 109.71158 * 290.45965 * 18 17 16 39 39 H 1.07997 * 125.91861 * 0.18012 * 20 19 18 40 40 H 1.07993 * 126.26035 * 179.90388 * 21 20 19 41 41 H 1.07993 * 126.33937 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.76843 * 54.59285 * 24 16 15 43 43 H 1.09000 * 109.78519 * 293.86508 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6182 9 14 5.9135 2.0966 -3.4169 10 1 6.1417 0.6399 -3.5938 11 1 6.1610 2.7965 -4.7030 12 1 6.8407 2.6209 -2.3822 13 6 2.2431 2.0164 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9914 1.3062 2.4723 16 7 2.4462 2.1506 3.5850 17 6 3.9062 2.3151 3.5586 18 6 4.3138 3.4807 4.4682 19 7 3.6693 3.2911 5.7735 20 6 3.9787 3.8869 6.9531 21 6 3.1337 3.4172 7.8964 22 6 2.2684 2.4956 7.2695 23 6 2.6154 2.4389 5.9752 24 6 1.9956 1.6073 4.8785 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6878 -2.0284 31 1 2.0956 3.1411 -1.1383 32 1 3.6752 3.5161 -4.4440 33 1 2.5385 0.3635 2.4843 34 1 0.9247 1.1086 2.5785 35 1 4.2293 2.5215 2.5382 36 1 4.3806 1.3986 3.9095 37 1 5.3969 3.4901 4.5907 38 1 3.9853 4.4224 4.0285 39 1 4.7647 4.6106 7.1105 40 1 3.1226 3.6957 8.9398 41 1 1.4737 1.9392 7.7440 42 1 2.3179 0.5706 4.9754 43 1 0.9089 1.6628 4.9436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932528914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:03 Heat of formation + Delta-G solvation = 11.724363 kcal Electronic energy + Delta-G solvation = -23673.431742 eV Core-core repulsion = 20333.076939 eV Total energy + Delta-G solvation = -3340.354803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.39604 -40.80902 -38.14715 -36.79741 -34.92755 -34.20451 -31.79129 -31.34691 -29.93384 -29.14601 -27.50756 -25.52078 -24.76796 -24.05924 -22.89466 -21.37518 -19.89008 -19.51277 -18.61666 -18.19579 -17.85483 -17.24708 -16.74776 -16.54336 -16.12770 -15.65908 -15.46819 -14.98798 -14.66089 -14.55874 -14.44700 -14.28220 -14.07333 -13.59207 -13.32377 -13.22944 -13.09509 -13.06930 -12.88191 -12.77325 -12.63073 -12.54820 -12.35923 -12.29216 -12.12694 -11.82557 -11.71577 -10.64342 -10.55167 -9.57019 -9.41163 -9.39885 -8.84249 -8.22076 -6.37205 1.35930 1.37630 1.39704 1.47111 1.86696 1.96364 2.13727 2.24119 2.40180 2.85907 3.07358 3.57299 3.65860 3.79971 3.94744 4.06246 4.17463 4.26165 4.30697 4.37037 4.44951 4.47661 4.58022 4.60986 4.67744 4.75862 4.78498 4.84718 4.95048 5.01352 5.07317 5.22934 5.37478 5.41015 5.42594 5.58508 5.71889 5.83965 5.89791 6.07083 6.20670 6.34845 6.52853 6.71209 6.84217 7.29239 7.53942 8.84669 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.004014 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.456867 B = 6973.567594 C = 7993.653804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.054 3.946 16 N -0.544 5.544 17 C 0.047 3.953 18 C 0.117 3.883 19 N -0.450 5.450 20 C -0.022 4.022 21 C -0.219 4.219 22 C -0.202 4.202 23 C -0.005 4.005 24 C 0.129 3.871 25 H 0.035 0.965 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.019 0.981 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.180 0.820 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.072 0.928 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -8.248 18.899 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.284 3.716 14 O -0.459 6.459 15 C -0.077 4.077 16 N -0.269 5.269 17 C -0.081 4.081 18 C -0.005 4.005 19 N -0.127 5.127 20 C -0.152 4.152 21 C -0.244 4.244 22 C -0.227 4.227 23 C -0.116 4.116 24 C 0.002 3.998 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.197 0.803 40 H 0.169 0.831 41 H 0.169 0.831 42 H 0.090 0.910 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.158 -7.033 18.313 19.735 hybrid contribution 1.190 -0.193 -0.860 1.481 sum -0.968 -7.226 17.452 18.914 Atomic orbital electron populations 1.22156 0.94595 1.03496 1.01703 1.21758 0.95311 0.81347 1.03896 1.48295 1.64141 1.15085 1.06139 1.18641 0.95164 0.91396 0.80437 1.21680 0.97879 1.31922 1.06470 0.92738 1.25862 1.02316 0.94519 0.96483 1.70053 1.37839 1.34225 1.14810 0.85489 0.79108 0.78999 0.77347 1.18447 1.20554 1.20221 1.21110 0.77554 0.86712 0.86193 1.90635 1.47248 1.20250 1.87752 1.22007 1.04315 0.94298 0.87041 1.61626 1.12110 1.50520 1.02641 1.22304 0.88211 0.97163 1.00420 1.22001 0.98512 0.99632 0.80325 1.44367 1.26548 1.33580 1.08158 1.22137 1.04868 1.03864 0.84314 1.21224 0.99957 1.03365 0.99856 1.20680 1.04408 1.05106 0.92492 1.20658 0.94461 1.00129 0.96359 1.20937 1.00866 0.95139 0.82894 0.94545 0.88604 0.91933 0.91141 0.88061 0.96309 0.98796 0.92468 0.89524 0.85051 0.90370 0.92900 0.87243 0.90994 0.80325 0.83070 0.83103 0.91044 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.24 71.98 0.74 -2.99 16 2 C 0.10 2.83 5.95 86.38 0.51 3.34 16 3 N -0.60 -24.69 2.46 -826.17 -2.03 -26.72 16 4 C 0.27 14.18 5.16 85.63 0.44 14.62 16 5 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 9 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.50 19.80 7.08 87.65 0.62 20.42 16 14 O -0.58 -29.29 14.41 -3.04 -0.04 -29.33 16 15 C 0.05 1.41 4.18 85.55 0.36 1.77 16 16 N -0.54 -15.23 4.35 -902.76 -3.93 -19.16 16 17 C 0.05 1.35 5.12 86.42 0.44 1.80 16 18 C 0.12 3.07 7.23 86.44 0.62 3.70 16 19 N -0.45 -11.72 3.15 -508.68 -1.60 -13.33 16 20 C -0.02 -0.50 11.55 83.36 0.96 0.46 16 21 C -0.22 -4.89 10.87 22.24 0.24 -4.65 16 22 C -0.20 -4.65 10.81 22.03 0.24 -4.41 16 23 C 0.00 -0.11 6.64 40.88 0.27 0.16 16 24 C 0.13 2.77 5.82 85.55 0.50 3.27 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.31 7.41 -2.39 -0.02 1.29 16 28 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 29 H 0.10 2.11 6.27 -2.39 -0.01 2.10 16 30 H 0.02 1.03 8.07 -2.39 -0.02 1.02 16 31 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.09 1.84 7.05 -2.38 -0.02 1.82 16 34 H 0.13 2.70 7.34 -2.39 -0.02 2.68 16 35 H 0.08 2.80 6.03 -2.39 -0.01 2.78 16 36 H 0.05 1.32 8.07 -2.39 -0.02 1.30 16 37 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 39 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 42 H 0.07 1.24 8.13 -2.39 -0.02 1.23 16 43 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.02 348.89 2.34 -73.67 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.98 Total: 16.60 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.65 Total: 7.84 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -7.28 Total: -115.21 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.04 Total: -29.33 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -76.02 2.34 -73.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932528914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.399 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds