Wall clock time and date at job start Tue Mar 31 2020 07:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99951 * 2 1 4 4 C 1.50698 * 109.47248 * 269.99893 * 3 2 1 5 5 H 1.08005 * 120.00002 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00323 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00317 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99907 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47289 * 89.99728 * 8 6 4 10 10 H 1.48498 * 109.47273 * 210.00249 * 8 6 4 11 11 H 1.48508 * 109.46741 * 330.00017 * 8 6 4 12 12 C 1.34775 * 120.00003 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00079 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99984 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47130 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.47286 * 180.02562 * 15 14 12 17 17 C 1.46949 * 111.00218 * 169.99829 * 16 15 14 18 18 C 1.53367 * 109.78577 * 164.63193 * 17 16 15 19 19 N 1.46803 * 108.21186 * 50.18941 * 18 17 16 20 20 C 1.35723 * 128.03652 * 163.41372 * 19 18 17 21 21 C 1.35059 * 108.16626 * 180.20927 * 20 19 18 22 22 C 1.41104 * 107.49052 * 359.93372 * 21 20 19 23 23 C 1.34118 * 107.32026 * 359.95699 * 22 21 20 24 24 C 1.47358 * 110.99953 * 45.85362 * 16 15 14 25 25 H 1.08999 * 109.47178 * 269.99794 * 1 2 3 26 26 H 1.09000 * 109.46638 * 30.00330 * 1 2 3 27 27 H 1.09001 * 109.47062 * 149.99774 * 1 2 3 28 28 H 1.09000 * 109.46926 * 29.99999 * 3 2 1 29 29 H 1.08999 * 109.46889 * 149.99986 * 3 2 1 30 30 H 0.97002 * 120.00328 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47062 * 60.00273 * 14 12 2 32 32 H 1.09002 * 109.47169 * 300.00122 * 14 12 2 33 33 H 1.09006 * 109.47387 * 60.00027 * 15 14 12 34 34 H 1.09002 * 109.47107 * 300.00053 * 15 14 12 35 35 H 1.09005 * 109.42037 * 44.53895 * 17 16 15 36 36 H 1.08998 * 109.42410 * 284.73071 * 17 16 15 37 37 H 1.09002 * 109.70941 * 169.86700 * 18 17 16 38 38 H 1.08995 * 109.71729 * 290.46143 * 18 17 16 39 39 H 1.08001 * 125.91402 * 0.17039 * 20 19 18 40 40 H 1.08003 * 126.25571 * 179.97438 * 21 20 19 41 41 H 1.07999 * 126.34271 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.77302 * 54.58776 * 24 16 15 43 43 H 1.09007 * 109.74020 * 293.84767 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.3466 3.2568 -2.9126 8 14 3.7339 3.9287 -0.2529 9 1 5.1069 3.5068 0.1238 10 1 3.7498 5.3553 -0.6648 11 1 2.8272 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0018 16 7 1.6451 -4.9074 0.0012 17 6 2.5521 -6.0391 -0.2359 18 6 1.8547 -7.3515 0.1426 19 7 0.5408 -7.3782 -0.5117 20 6 -0.2724 -8.4462 -0.7114 21 6 -1.3793 -8.0180 -1.3560 22 6 -1.2408 -6.6286 -1.5594 23 6 -0.0622 -6.2636 -1.0336 24 6 0.5524 -4.8859 -0.9872 25 1 -0.3633 0.0000 1.0277 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 3.8234 4.0827 -3.0899 31 1 0.7592 -2.5303 -0.8897 32 1 0.7584 -2.5299 0.8903 33 1 3.0056 -3.5771 0.8923 34 1 3.0070 -3.5779 -0.8877 35 1 3.4495 -5.9176 0.3708 36 1 2.8293 -6.0668 -1.2897 37 1 2.4524 -8.1970 -0.1980 38 1 1.7287 -7.4024 1.2241 39 1 -0.0693 -9.4627 -0.4080 40 1 -2.2176 -8.6275 -1.6597 41 1 -1.9522 -5.9792 -2.0478 42 1 0.9482 -4.6258 -1.9689 43 1 -0.2004 -4.1566 -0.6879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932528992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:20 Heat of formation + Delta-G solvation = 9.356724 kcal Electronic energy + Delta-G solvation = -23084.760767 eV Core-core repulsion = 19744.303296 eV Total energy + Delta-G solvation = -3340.457472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37785 -40.79239 -38.63030 -36.64445 -34.80194 -34.51731 -32.48844 -30.96626 -30.18552 -28.73979 -27.33579 -26.45094 -24.98440 -23.54196 -22.37746 -21.27639 -19.98161 -19.50687 -19.15677 -18.38595 -17.71992 -17.10219 -16.92478 -16.65010 -16.18856 -15.85703 -15.52719 -15.25994 -14.72998 -14.55155 -14.36655 -14.29534 -14.01580 -13.67767 -13.63673 -13.40818 -13.15521 -13.08900 -12.95658 -12.79292 -12.64638 -12.45763 -12.26835 -12.22125 -12.10013 -11.94523 -11.75501 -10.84444 -10.68271 -9.65918 -9.41832 -9.39195 -8.85011 -8.35277 -6.40645 1.32513 1.36379 1.37261 1.45111 1.78397 2.00434 2.13983 2.28113 2.30445 2.79006 2.99350 3.60710 3.71520 3.77521 3.80097 4.02141 4.13620 4.24539 4.32366 4.38516 4.40647 4.52952 4.58748 4.61825 4.67670 4.72859 4.77478 4.81474 4.84651 4.88267 4.93376 4.99462 5.00116 5.39422 5.42669 5.44861 5.60776 5.75914 5.80554 6.17414 6.22289 6.32217 6.57775 6.60749 6.69195 7.20183 7.40516 8.81778 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032475 B = 0.002989 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.985550 B = 9365.959806 C = 9667.934263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.537 4.537 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.237 1.237 12 C 0.498 3.502 13 O -0.597 6.597 14 C -0.125 4.125 15 C 0.082 3.918 16 N -0.537 5.537 17 C 0.036 3.964 18 C 0.113 3.887 19 N -0.450 5.450 20 C -0.011 4.011 21 C -0.225 4.225 22 C -0.210 4.210 23 C -0.002 4.002 24 C 0.116 3.884 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.269 0.731 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.111 0.889 36 H 0.038 0.962 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.188 0.812 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.046 0.954 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 -22.522 9.150 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.339 5.339 3 C 0.099 3.901 4 C -0.576 4.576 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.160 1.160 12 C 0.287 3.713 13 O -0.478 6.478 14 C -0.165 4.165 15 C -0.045 4.045 16 N -0.261 5.261 17 C -0.093 4.093 18 C -0.008 4.008 19 N -0.127 5.127 20 C -0.142 4.142 21 C -0.250 4.250 22 C -0.234 4.234 23 C -0.114 4.114 24 C -0.012 4.012 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.129 0.871 36 H 0.056 0.944 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.205 0.795 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.063 0.937 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.236 -22.457 9.701 25.812 hybrid contribution 0.877 0.980 -1.076 1.699 sum -7.360 -21.477 8.626 24.286 Atomic orbital electron populations 1.21993 0.77485 1.04032 1.03078 1.47977 1.08541 1.05980 1.71395 1.19340 0.92808 0.82679 0.95227 1.21576 1.36782 1.06748 0.92454 0.95423 1.25882 0.95301 0.98997 0.98676 1.70051 1.42743 1.24528 1.21355 0.85690 0.79572 0.77697 0.79837 1.20180 1.20024 1.15976 1.21273 0.87774 0.86637 0.75651 1.90636 1.16509 1.88209 1.52482 1.21718 0.99093 0.89265 1.06399 1.21701 0.94576 0.86691 1.01580 1.62271 1.11874 1.02821 1.49184 1.22484 0.96284 0.89739 1.00755 1.22225 0.80999 0.98545 0.98986 1.44383 1.16529 1.07035 1.44769 1.22136 0.92502 0.93247 1.06289 1.21217 1.00541 0.95128 1.08107 1.20694 0.97772 0.96710 1.08273 1.20480 0.96211 0.89011 1.05690 1.20986 0.93893 0.92440 0.93868 0.90062 0.91671 0.89149 0.93130 0.96286 0.92251 0.87447 0.85532 0.89869 0.95680 0.87072 0.94374 0.86744 0.88505 0.79496 0.83494 0.84197 0.93651 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 10.24 127.77 1.31 3.39 16 2 N -0.61 -24.13 2.86 -851.12 -2.43 -26.56 16 3 C 0.22 10.77 4.23 85.63 0.36 11.13 16 4 C -0.54 -31.72 9.94 25.60 0.25 -31.46 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.55 5.47 84.65 0.46 1.01 16 7 N -0.95 -60.18 13.96 21.44 0.30 -59.88 16 8 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 12 C 0.50 19.44 7.67 87.66 0.67 20.11 16 13 O -0.60 -29.25 15.56 -3.04 -0.05 -29.29 16 14 C -0.13 -3.22 3.53 29.85 0.11 -3.12 16 15 C 0.08 2.11 4.49 86.30 0.39 2.50 16 16 N -0.54 -11.31 4.81 -898.18 -4.32 -15.63 16 17 C 0.04 0.61 5.49 86.42 0.47 1.09 16 18 C 0.11 1.56 7.23 86.44 0.62 2.19 16 19 N -0.45 -8.67 3.16 -508.70 -1.61 -10.28 16 20 C -0.01 -0.20 11.55 83.36 0.96 0.76 16 21 C -0.23 -4.44 10.87 22.24 0.24 -4.20 16 22 C -0.21 -4.63 10.81 22.03 0.24 -4.39 16 23 C 0.00 -0.05 6.64 40.88 0.27 0.22 16 24 C 0.12 2.45 4.76 85.54 0.41 2.86 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.93 8.07 -2.39 -0.02 1.92 16 27 H 0.09 1.92 6.44 -2.39 -0.02 1.90 16 28 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 29 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 31 H 0.11 2.45 5.72 -2.39 -0.01 2.43 16 32 H 0.13 2.56 8.11 -2.39 -0.02 2.54 16 33 H 0.08 2.22 8.10 -2.38 -0.02 2.20 16 34 H 0.02 0.75 8.04 -2.39 -0.02 0.73 16 35 H 0.11 1.60 8.00 -2.38 -0.02 1.58 16 36 H 0.04 0.73 8.07 -2.39 -0.02 0.72 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 43 H 0.11 2.06 6.65 -2.38 -0.02 2.05 16 Total: -1.00 -79.92 345.75 1.48 -78.44 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.93 Total: 14.78 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 6.77 Total: 2.08 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -8.06 Total: -112.35 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.29 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -79.92 1.48 -78.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932528992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.795 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds