Wall clock time and date at job start Tue Mar 31 2020 07:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40081 * 126.03908 * 2 1 4 4 C 1.30839 * 108.20683 * 180.22914 * 3 2 1 5 5 C 1.39878 * 108.20103 * 359.78160 * 4 3 2 6 6 C 1.34946 * 126.03379 * 179.84354 * 2 1 3 7 7 C 1.50698 * 126.13074 * 0.03454 * 6 2 1 8 8 H 1.09000 * 109.54521 * 144.60710 * 7 6 2 9 9 C 1.53098 * 109.50956 * 264.71836 * 7 6 2 10 10 N 1.47018 * 109.29488 * 176.75830 * 9 7 6 11 11 C 1.46897 * 110.99767 * 177.62764 * 10 9 7 12 12 C 1.53005 * 109.47010 * 165.45039 * 11 10 9 13 13 C 1.50703 * 115.54946 * 291.99371 * 12 11 10 14 14 H 1.07994 * 120.00349 * 144.02452 * 13 12 11 15 15 C 1.37878 * 119.99658 * 324.01944 * 13 12 11 16 16 N 1.31511 * 120.00040 * 353.50417 * 15 13 12 17 17 Si 1.86797 * 119.99744 * 173.50204 * 15 13 12 18 18 H 1.48497 * 109.47526 * 60.00225 * 17 15 13 19 19 H 1.48504 * 109.47296 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47014 * 300.00024 * 17 15 13 21 21 C 1.52995 * 117.50153 * 146.31615 * 12 11 10 22 22 C 1.53005 * 117.49790 * 77.65571 * 12 11 10 23 23 C 1.47014 * 110.75097 * 301.45172 * 10 9 7 24 24 C 1.53093 * 109.29295 * 58.54718 * 23 10 9 25 25 O 1.43013 * 109.50469 * 24.49921 * 7 6 2 26 26 H 1.08999 * 109.47554 * 270.15808 * 1 2 3 27 27 H 1.09010 * 109.47059 * 30.15990 * 1 2 3 28 28 H 1.09005 * 109.47168 * 150.15371 * 1 2 3 29 29 H 1.07991 * 125.89994 * 179.81707 * 4 3 2 30 30 H 1.07993 * 126.04151 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.50683 * 296.71904 * 9 7 6 32 32 H 1.08997 * 109.50703 * 56.80629 * 9 7 6 33 33 H 1.09002 * 109.47411 * 285.44962 * 11 10 9 34 34 H 1.09001 * 109.47250 * 45.45325 * 11 10 9 35 35 H 0.97003 * 120.00092 * 185.00139 * 16 15 13 36 36 H 1.09005 * 117.49629 * 0.02562 * 21 12 11 37 37 H 1.08996 * 117.50124 * 145.01878 * 21 12 11 38 38 H 1.08998 * 117.49956 * 214.98133 * 22 12 11 39 39 H 1.08998 * 117.49511 * 0.02562 * 22 12 11 40 40 H 1.09000 * 109.46865 * 298.60967 * 23 10 9 41 41 H 1.09005 * 109.50647 * 178.50774 * 23 10 9 42 42 H 1.09002 * 109.50547 * 183.23551 * 24 23 10 43 43 H 1.08999 * 109.54147 * 63.13476 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0050 5 6 3.5437 -0.6667 -0.0032 6 6 2.2588 -1.0913 0.0030 7 6 1.7972 -2.5258 0.0062 8 1 2.4830 -3.1308 -0.5870 9 6 1.7664 -3.0498 1.4444 10 7 1.2420 -4.4232 1.4498 11 6 1.2488 -4.9839 2.8076 12 6 0.3805 -6.2432 2.8437 13 6 -1.0982 -6.0187 2.6588 14 1 -1.6898 -6.7391 2.1136 15 6 -1.6958 -4.8935 3.1860 16 7 -1.0053 -4.0822 3.9570 17 14 -3.4863 -4.5215 2.8050 18 1 -4.3375 -5.6389 3.2868 19 1 -3.8866 -3.2643 3.4865 20 1 -3.6581 -4.3653 1.3383 21 6 0.8118 -7.3720 3.7821 22 6 0.9771 -7.5294 2.2685 23 6 -0.1070 -4.4680 0.8671 24 6 -0.0574 -3.9298 -0.5653 25 8 0.4835 -2.6060 -0.5533 26 1 -0.3634 0.0028 1.0276 27 1 -0.3634 0.8886 -0.5164 28 1 -0.3634 -0.8914 -0.5115 29 1 4.4053 1.3709 -0.0091 30 1 4.4209 -1.2965 -0.0059 31 1 2.7758 -3.0439 1.8556 32 1 1.1228 -2.4121 2.0503 33 1 2.2702 -5.2386 3.0905 34 1 0.8509 -4.2481 3.5065 35 1 -1.4436 -3.3309 4.3864 36 1 1.7139 -7.2173 4.3741 37 1 0.0261 -7.9525 4.2656 38 1 0.3000 -8.2133 1.7568 39 1 1.9882 -7.4784 1.8647 40 1 -0.7811 -3.8535 1.4637 41 1 -0.4651 -5.4975 0.8569 42 1 -1.0648 -3.9077 -0.9809 43 1 0.5740 -4.5755 -1.1757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933539383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:17 Heat of formation + Delta-G solvation = 87.128329 kcal Electronic energy + Delta-G solvation = -24861.893549 eV Core-core repulsion = 21524.808507 eV Total energy + Delta-G solvation = -3337.085042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13552 -39.04951 -37.01991 -34.06820 -32.96281 -32.50721 -31.85719 -28.96274 -27.41721 -26.48355 -25.95882 -23.62600 -23.34597 -21.14680 -20.94403 -20.09421 -19.60395 -18.87151 -16.84444 -16.40622 -15.60317 -15.30252 -15.11604 -14.87182 -14.47166 -14.20815 -14.15743 -13.77435 -13.45149 -13.37233 -13.12683 -12.71149 -12.45456 -12.05093 -11.87340 -11.53065 -11.42577 -11.26832 -10.80235 -10.76084 -10.54171 -10.52342 -10.40278 -10.26472 -9.92775 -9.45753 -9.33737 -9.00445 -8.96955 -8.70447 -8.37851 -8.32477 -7.23002 -6.06119 -4.18901 2.00869 2.74917 2.95596 3.14243 3.21862 3.23925 3.85873 4.19988 4.56956 4.82962 4.88106 5.09287 5.34086 5.38117 5.44615 5.51748 5.54720 5.73611 5.78008 5.83482 5.90126 5.96232 6.00705 6.11652 6.17807 6.29271 6.37383 6.40560 6.60387 6.71537 6.72800 6.81085 6.88711 7.01027 7.05740 7.17627 7.28382 7.32155 7.47094 7.50110 7.89328 7.91284 8.07847 8.15325 8.30970 8.70875 9.33410 10.78821 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.005785 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.094414 B = 4839.184078 C = 5575.200565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.353 5.353 3 N -0.307 5.307 4 C 0.042 3.958 5 C -0.275 4.275 6 C 0.105 3.895 7 C 0.160 3.840 8 H 0.087 0.913 9 C 0.036 3.964 10 N -0.524 5.524 11 C 0.075 3.925 12 C 0.050 3.950 13 C -0.482 4.482 14 H 0.062 0.938 15 C 0.071 3.929 16 N -0.878 5.878 17 Si 0.885 3.115 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.202 4.202 22 C -0.201 4.201 23 C 0.021 3.979 24 C 0.053 3.947 25 O -0.392 6.392 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.181 0.819 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.109 0.891 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 4.256 -7.077 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.134 5.134 3 N -0.129 5.129 4 C -0.143 4.143 5 C -0.305 4.305 6 C -0.024 4.024 7 C 0.100 3.900 8 H 0.105 0.895 9 C -0.094 4.094 10 N -0.249 5.249 11 C -0.051 4.051 12 C 0.049 3.951 13 C -0.520 4.520 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.516 5.516 17 Si 0.712 3.288 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.241 4.241 22 C -0.238 4.238 23 C -0.107 4.107 24 C -0.023 4.023 25 O -0.312 6.312 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.134 0.866 29 H 0.198 0.802 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.031 5.370 -7.369 9.969 hybrid contribution -0.737 -0.272 0.649 1.019 sum 3.294 5.098 -6.720 9.055 Atomic orbital electron populations 1.22218 0.73763 1.05218 1.03587 1.48445 1.06838 1.02828 1.55302 1.77296 1.01897 1.08558 1.25164 1.23716 0.95193 0.94793 1.00571 1.21102 0.95843 0.95074 1.18469 1.20908 0.91271 0.89378 1.00861 1.20544 0.85616 0.88301 0.95494 0.89544 1.22538 1.00900 0.91905 0.94047 1.62357 1.23380 1.15689 1.23444 1.22082 0.95561 0.98510 0.88994 1.19014 0.93898 0.85540 0.96637 1.20456 0.91303 1.05590 1.34607 0.91971 1.24905 0.97704 0.95615 0.94855 1.69642 1.35021 1.16750 1.30206 0.86764 0.85070 0.77957 0.79049 1.20079 1.21138 1.19634 1.22929 1.01233 1.08241 0.91677 1.22815 1.00350 1.04899 0.95764 1.23484 0.90471 1.05160 0.91595 1.23091 0.97975 0.82123 0.99079 1.87748 1.30479 1.30337 1.82647 0.91237 0.90303 0.86598 0.80208 0.83514 0.90740 0.94269 0.95217 0.87406 0.92650 0.91813 0.90608 0.91045 0.91123 0.92478 0.85743 0.89266 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 11.09 59.85 0.66 2.01 16 2 N -0.35 -5.81 4.01 -63.88 -0.26 -6.07 16 3 N -0.31 -5.04 12.58 30.62 0.39 -4.65 16 4 C 0.04 0.59 12.03 -17.36 -0.21 0.38 16 5 C -0.28 -3.93 10.72 -40.01 -0.43 -4.36 16 6 C 0.11 1.69 6.05 -82.26 -0.50 1.19 16 7 C 0.16 2.61 3.23 -27.83 -0.09 2.52 16 8 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 9 C 0.04 0.66 4.86 -3.71 -0.02 0.64 16 10 N -0.52 -10.48 4.90 -234.30 -1.15 -11.63 16 11 C 0.08 1.67 5.00 -3.82 -0.02 1.65 16 12 C 0.05 1.13 1.34 -155.66 -0.21 0.92 16 13 C -0.48 -11.67 5.80 -34.44 -0.20 -11.87 16 14 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 15 C 0.07 1.73 3.11 -17.82 -0.06 1.68 16 16 N -0.88 -22.32 10.24 55.43 0.57 -21.75 16 17 Si 0.88 19.33 29.25 -169.99 -4.97 14.35 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C -0.20 -4.38 9.91 -26.70 -0.26 -4.64 16 22 C -0.20 -4.15 9.96 -26.69 -0.27 -4.41 16 23 C 0.02 0.41 4.03 -3.71 -0.01 0.40 16 24 C 0.05 0.89 7.01 37.21 0.26 1.15 16 25 O -0.39 -6.58 7.21 -35.23 -0.25 -6.84 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.12 1.71 5.20 -51.93 -0.27 1.44 16 29 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.11 2.69 5.06 -51.93 -0.26 2.43 16 35 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.06 1.30 5.46 -51.93 -0.28 1.02 16 41 H 0.13 2.70 5.03 -51.93 -0.26 2.44 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -26.43 334.28 -8.53 -34.95 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.54 Total: 9.33 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.35 Total: -12.74 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.45 Total: -44.10 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.25 Total: -6.84 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.97 Total: 14.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.43 -8.53 -34.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933539383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.083 kcal (2) G-P(sol) polarization free energy of solvation -26.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds