Wall clock time and date at job start Tue Mar 31 2020 07:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40081 * 126.03908 * 2 1 4 4 C 1.30839 * 108.20683 * 180.22914 * 3 2 1 5 5 C 1.39878 * 108.20103 * 359.78160 * 4 3 2 6 6 C 1.34946 * 126.03379 * 179.84354 * 2 1 3 7 7 C 1.50698 * 126.13074 * 0.03454 * 6 2 1 8 8 H 1.09000 * 109.54521 * 144.60710 * 7 6 2 9 9 C 1.53098 * 109.50956 * 264.71836 * 7 6 2 10 10 N 1.47018 * 109.29488 * 176.75830 * 9 7 6 11 11 C 1.46897 * 110.99767 * 177.62764 * 10 9 7 12 12 C 1.53005 * 109.47010 * 165.45039 * 11 10 9 13 13 C 1.50703 * 115.54946 * 291.99371 * 12 11 10 14 14 H 1.07994 * 120.00349 * 144.02452 * 13 12 11 15 15 C 1.37878 * 119.99658 * 324.01944 * 13 12 11 16 16 N 1.31511 * 120.00040 * 353.50417 * 15 13 12 17 17 Si 1.86797 * 119.99744 * 173.50204 * 15 13 12 18 18 H 1.48497 * 109.47526 * 60.00225 * 17 15 13 19 19 H 1.48504 * 109.47296 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47014 * 300.00024 * 17 15 13 21 21 C 1.52995 * 117.50153 * 146.31615 * 12 11 10 22 22 C 1.53005 * 117.49790 * 77.65571 * 12 11 10 23 23 C 1.47014 * 110.75097 * 301.45172 * 10 9 7 24 24 C 1.53093 * 109.29295 * 58.54718 * 23 10 9 25 25 O 1.43013 * 109.50469 * 24.49921 * 7 6 2 26 26 H 1.08999 * 109.47554 * 270.15808 * 1 2 3 27 27 H 1.09010 * 109.47059 * 30.15990 * 1 2 3 28 28 H 1.09005 * 109.47168 * 150.15371 * 1 2 3 29 29 H 1.07991 * 125.89994 * 179.81707 * 4 3 2 30 30 H 1.07993 * 126.04151 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.50683 * 296.71904 * 9 7 6 32 32 H 1.08997 * 109.50703 * 56.80629 * 9 7 6 33 33 H 1.09002 * 109.47411 * 285.44962 * 11 10 9 34 34 H 1.09001 * 109.47250 * 45.45325 * 11 10 9 35 35 H 0.97003 * 120.00092 * 185.00139 * 16 15 13 36 36 H 1.09005 * 117.49629 * 0.02562 * 21 12 11 37 37 H 1.08996 * 117.50124 * 145.01878 * 21 12 11 38 38 H 1.08998 * 117.49956 * 214.98133 * 22 12 11 39 39 H 1.08998 * 117.49511 * 0.02562 * 22 12 11 40 40 H 1.09000 * 109.46865 * 298.60967 * 23 10 9 41 41 H 1.09005 * 109.50647 * 178.50774 * 23 10 9 42 42 H 1.09002 * 109.50547 * 183.23551 * 24 23 10 43 43 H 1.08999 * 109.54147 * 63.13476 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0050 5 6 3.5437 -0.6667 -0.0032 6 6 2.2588 -1.0913 0.0030 7 6 1.7972 -2.5258 0.0062 8 1 2.4830 -3.1308 -0.5870 9 6 1.7664 -3.0498 1.4444 10 7 1.2420 -4.4232 1.4498 11 6 1.2488 -4.9839 2.8076 12 6 0.3805 -6.2432 2.8437 13 6 -1.0982 -6.0187 2.6588 14 1 -1.6898 -6.7391 2.1136 15 6 -1.6958 -4.8935 3.1860 16 7 -1.0053 -4.0822 3.9570 17 14 -3.4863 -4.5215 2.8050 18 1 -4.3375 -5.6389 3.2868 19 1 -3.8866 -3.2643 3.4865 20 1 -3.6581 -4.3653 1.3383 21 6 0.8118 -7.3720 3.7821 22 6 0.9771 -7.5294 2.2685 23 6 -0.1070 -4.4680 0.8671 24 6 -0.0574 -3.9298 -0.5653 25 8 0.4835 -2.6060 -0.5533 26 1 -0.3634 0.0028 1.0276 27 1 -0.3634 0.8886 -0.5164 28 1 -0.3634 -0.8914 -0.5115 29 1 4.4053 1.3709 -0.0091 30 1 4.4209 -1.2965 -0.0059 31 1 2.7758 -3.0439 1.8556 32 1 1.1228 -2.4121 2.0503 33 1 2.2702 -5.2386 3.0905 34 1 0.8509 -4.2481 3.5065 35 1 -1.4436 -3.3309 4.3864 36 1 1.7139 -7.2173 4.3741 37 1 0.0261 -7.9525 4.2656 38 1 0.3000 -8.2133 1.7568 39 1 1.9882 -7.4784 1.8647 40 1 -0.7811 -3.8535 1.4637 41 1 -0.4651 -5.4975 0.8569 42 1 -1.0648 -3.9077 -0.9809 43 1 0.5740 -4.5755 -1.1757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933539383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:17 Heat of formation + Delta-G solvation = 71.428117 kcal Electronic energy + Delta-G solvation = -24862.574361 eV Core-core repulsion = 21524.808507 eV Total energy + Delta-G solvation = -3337.765854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30155 -40.51849 -38.63163 -35.63371 -34.31711 -34.10349 -33.21514 -30.33890 -28.92918 -27.81110 -27.58056 -25.14802 -24.81687 -22.83688 -22.08702 -21.56463 -20.90048 -20.59389 -18.32262 -17.90359 -17.03055 -16.77434 -16.55274 -16.38980 -15.83062 -15.76092 -15.68473 -15.13097 -14.90641 -14.75575 -14.43705 -14.30301 -13.62798 -13.50068 -13.15244 -13.12921 -13.09069 -12.86168 -12.51158 -12.32519 -12.27367 -12.03782 -11.98351 -11.76978 -11.28746 -11.17850 -10.87326 -10.70241 -10.48622 -10.18372 -10.13055 -9.48950 -8.94152 -7.91415 -6.09544 0.82624 1.38227 1.42724 1.46315 1.62633 1.87519 2.38194 2.57999 2.97753 3.16284 3.69626 3.78385 3.82220 3.95170 4.14749 4.31929 4.33335 4.35268 4.41922 4.54329 4.56741 4.65209 4.68105 4.71349 4.74341 4.84902 4.86918 4.96884 5.03685 5.04749 5.12347 5.20216 5.33397 5.39755 5.57424 5.61059 5.66423 5.77359 6.00832 6.09325 6.11973 6.41118 6.44496 6.49453 6.76166 6.83021 7.44128 8.89427 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.005785 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.094414 B = 4839.184078 C = 5575.200565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.368 5.368 3 N -0.336 5.336 4 C 0.047 3.953 5 C -0.271 4.271 6 C 0.083 3.917 7 C 0.169 3.831 8 H 0.104 0.896 9 C 0.044 3.956 10 N -0.517 5.517 11 C 0.082 3.918 12 C 0.024 3.976 13 C -0.485 4.485 14 H 0.057 0.943 15 C 0.041 3.959 16 N -0.899 5.899 17 Si 0.927 3.073 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.260 1.260 21 C -0.206 4.206 22 C -0.177 4.177 23 C 0.027 3.973 24 C 0.059 3.941 25 O -0.394 6.394 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.219 0.781 30 H 0.173 0.827 31 H 0.084 0.916 32 H 0.005 0.995 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 4.204 -8.687 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.150 5.150 3 N -0.158 5.158 4 C -0.138 4.138 5 C -0.300 4.300 6 C -0.046 4.046 7 C 0.110 3.890 8 H 0.121 0.879 9 C -0.086 4.086 10 N -0.241 5.241 11 C -0.045 4.045 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.075 0.925 15 C -0.158 4.158 16 N -0.538 5.538 17 Si 0.753 3.247 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.184 1.184 21 C -0.245 4.245 22 C -0.215 4.215 23 C -0.101 4.101 24 C -0.017 4.017 25 O -0.314 6.314 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.235 0.765 30 H 0.190 0.810 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.044 0.956 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.234 5.303 -8.993 11.679 hybrid contribution -1.046 -0.264 1.179 1.598 sum 4.187 5.039 -7.814 10.198 Atomic orbital electron populations 1.22207 0.73532 1.05840 1.03086 1.48624 1.07310 1.03042 1.56072 1.77268 1.03074 1.09093 1.26355 1.24398 0.95466 0.95269 0.98625 1.21509 0.95936 0.95656 1.16884 1.21067 0.92175 0.89129 1.02213 1.20489 0.85711 0.88942 0.93894 0.87865 1.22509 1.00352 0.90322 0.95396 1.62385 1.23229 1.16530 1.21947 1.21866 0.95248 0.97764 0.89644 1.19112 0.93555 0.86541 0.98446 1.20573 0.92166 1.05379 1.34089 0.92528 1.25337 1.00142 0.95550 0.94813 1.69809 1.35784 1.16966 1.31236 0.86088 0.82046 0.77153 0.79379 1.20179 1.21989 1.18405 1.22937 1.01366 1.07589 0.92564 1.22783 1.00854 1.02992 0.94843 1.23268 0.89786 1.03715 0.93317 1.23053 0.99481 0.82285 0.96850 1.87776 1.30910 1.30291 1.82420 0.92291 0.88616 0.86995 0.76467 0.80964 0.89812 0.97626 0.94882 0.90281 0.93413 0.90948 0.91313 0.90516 0.89746 0.95572 0.87322 0.87638 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 11.09 127.77 1.42 4.13 16 2 N -0.37 -11.82 4.01 -356.02 -1.43 -13.25 16 3 N -0.34 -10.53 12.58 -57.02 -0.72 -11.24 16 4 C 0.05 1.18 12.03 85.24 1.03 2.20 16 5 C -0.27 -6.99 10.72 21.99 0.24 -6.75 16 6 C 0.08 2.54 6.05 41.41 0.25 2.79 16 7 C 0.17 5.24 3.23 29.88 0.10 5.34 16 8 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 9 C 0.04 1.59 4.86 86.31 0.42 2.01 16 10 N -0.52 -20.37 4.90 -895.20 -4.39 -24.76 16 11 C 0.08 3.66 5.00 86.31 0.43 4.10 16 12 C 0.02 1.09 1.34 -52.93 -0.07 1.02 16 13 C -0.48 -23.55 5.80 25.60 0.15 -23.41 16 14 H 0.06 2.75 7.82 -2.91 -0.02 2.73 16 15 C 0.04 2.03 3.11 84.66 0.26 2.29 16 16 N -0.90 -47.00 10.24 21.45 0.22 -46.78 16 17 Si 0.93 39.98 29.25 68.60 2.01 41.99 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.21 -8.77 9.91 30.62 0.30 -8.46 16 22 C -0.18 -7.03 9.96 30.62 0.30 -6.73 16 23 C 0.03 1.08 4.03 86.31 0.35 1.43 16 24 C 0.06 1.88 7.01 72.01 0.50 2.38 16 25 O -0.39 -12.70 7.21 -148.98 -1.07 -13.77 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 2.34 8.14 -2.38 -0.02 2.33 16 28 H 0.11 3.28 5.20 -2.38 -0.01 3.27 16 29 H 0.22 3.49 8.06 -2.92 -0.02 3.46 16 30 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.01 0.23 8.13 -2.39 -0.02 0.22 16 33 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.08 4.06 5.06 -2.39 -0.01 4.05 16 35 H 0.26 13.26 8.32 -92.71 -0.77 12.49 16 36 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.03 1.21 5.46 -2.39 -0.01 1.19 16 41 H 0.11 4.67 5.03 -2.38 -0.01 4.66 16 42 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -56.66 334.28 1.29 -55.37 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 1.00 Total: 30.11 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 5.68 Total: -17.66 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -6.32 Total: -96.04 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.07 Total: -13.77 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.01 Total: 41.99 kcal Total: -56.66 1.29 -55.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933539383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.798 kcal (2) G-P(sol) polarization free energy of solvation -56.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds