Wall clock time and date at job start Tue Mar 31 2020 07:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40088 * 126.03838 * 2 1 4 4 C 1.30833 * 108.20583 * 179.97438 * 3 2 1 5 5 C 1.39879 * 108.20340 * 359.77299 * 4 3 2 6 6 C 1.34946 * 126.03758 * 179.97438 * 2 1 3 7 7 C 1.50707 * 126.12517 * 359.97438 * 6 2 1 8 8 H 1.08991 * 109.50710 * 29.14895 * 7 6 2 9 9 C 1.53102 * 109.50434 * 269.01877 * 7 6 2 10 10 N 1.47012 * 109.25407 * 183.21764 * 9 7 6 11 11 C 1.46900 * 110.99493 * 182.39343 * 10 9 7 12 12 C 1.53006 * 109.47203 * 302.35621 * 11 10 9 13 13 C 1.50699 * 115.56062 * 281.97486 * 12 11 10 14 14 H 1.07998 * 119.99957 * 139.81897 * 13 12 11 15 15 C 1.37875 * 119.99978 * 319.81112 * 13 12 11 16 16 N 1.31513 * 120.00535 * 341.62915 * 15 13 12 17 17 Si 1.86800 * 119.99578 * 161.63266 * 15 13 12 18 18 H 1.48503 * 109.47451 * 4.97453 * 17 15 13 19 19 H 1.48499 * 109.47274 * 124.97739 * 17 15 13 20 20 H 1.48501 * 109.47046 * 244.97285 * 17 15 13 21 21 C 1.52998 * 117.49479 * 67.66542 * 12 11 10 22 22 C 1.53004 * 117.49479 * 136.28718 * 12 11 10 23 23 C 1.47019 * 110.75439 * 58.61858 * 10 9 7 24 24 C 1.53095 * 109.25371 * 301.37996 * 23 10 9 25 25 O 1.43013 * 109.26037 * 56.85462 * 24 23 10 26 26 H 1.08998 * 109.47329 * 270.02763 * 1 2 3 27 27 H 1.09002 * 109.46942 * 30.02922 * 1 2 3 28 28 H 1.09000 * 109.46966 * 150.02701 * 1 2 3 29 29 H 1.08004 * 125.89915 * 180.02562 * 4 3 2 30 30 H 1.07996 * 126.04045 * 180.23644 * 5 4 3 31 31 H 1.08995 * 109.50389 * 63.28505 * 9 7 6 32 32 H 1.09006 * 109.50459 * 303.15157 * 9 7 6 33 33 H 1.09008 * 109.47194 * 182.36048 * 11 10 9 34 34 H 1.08994 * 109.47587 * 62.36046 * 11 10 9 35 35 H 0.96996 * 120.00030 * 185.06030 * 16 15 13 36 36 H 1.08994 * 117.49898 * 359.97438 * 21 12 11 37 37 H 1.09005 * 117.49671 * 214.97553 * 21 12 11 38 38 H 1.08997 * 117.49470 * 145.02284 * 22 12 11 39 39 H 1.08994 * 117.49939 * 359.97438 * 22 12 11 40 40 H 1.09000 * 109.50554 * 61.31833 * 23 10 9 41 41 H 1.09001 * 109.50447 * 181.40505 * 23 10 9 42 42 H 1.09002 * 109.50391 * 176.78236 * 24 23 10 43 43 H 1.08997 * 109.51112 * 296.91216 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6666 0.0062 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0017 8 1 0.8315 -2.5978 -0.4983 9 6 1.6647 -3.0190 1.4450 10 7 1.2891 -4.4403 1.4391 11 6 1.0959 -4.9393 2.8072 12 6 2.3781 -4.7250 3.6141 13 6 3.4826 -5.7171 3.3555 14 1 4.5078 -5.3818 3.3015 15 6 3.1843 -7.0527 3.1879 16 7 2.0280 -7.5250 3.5996 17 14 4.4226 -8.1914 2.3760 18 1 5.6817 -7.4484 2.1151 19 1 4.7027 -9.3398 3.2749 20 1 3.8679 -8.6915 1.0924 21 6 2.7826 -3.2832 3.9279 22 6 2.2345 -4.1827 5.0376 23 6 2.2924 -5.2414 0.7229 24 6 2.4186 -4.7259 -0.7131 25 8 2.7535 -3.3358 -0.6876 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 4.4054 1.3710 0.0011 30 1 4.4210 -1.2963 0.0116 31 1 0.8957 -2.4414 1.9578 32 1 2.6173 -2.8964 1.9605 33 1 0.8598 -6.0030 2.7761 34 1 0.2752 -4.3987 3.2787 35 1 1.8471 -8.4766 3.5490 36 1 2.1355 -2.4874 3.5591 37 1 3.8477 -3.0521 3.9472 38 1 2.9391 -4.5435 5.7870 39 1 1.2268 -3.9783 5.3991 40 1 3.2550 -5.1543 1.2269 41 1 1.9819 -6.2861 0.7093 42 1 3.2019 -5.2794 -1.2310 43 1 1.4707 -4.8625 -1.2335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933539385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:21 Heat of formation + Delta-G solvation = 86.334832 kcal Electronic energy + Delta-G solvation = -24874.681643 eV Core-core repulsion = 21537.562193 eV Total energy + Delta-G solvation = -3337.119450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17969 -39.26867 -37.03721 -33.77875 -33.34632 -32.47204 -31.82000 -28.88832 -27.70547 -26.66673 -25.79668 -23.91930 -23.46773 -21.43838 -20.99416 -20.13805 -19.29775 -19.07202 -16.95429 -16.28490 -15.80259 -15.51286 -15.15420 -14.88174 -14.59402 -14.36694 -14.16388 -13.76493 -13.50020 -13.43028 -12.98560 -12.67122 -12.38846 -12.33520 -12.17635 -11.65146 -11.28322 -11.18987 -10.94201 -10.83776 -10.63719 -10.55168 -10.31552 -10.22856 -10.12745 -9.67021 -9.42869 -9.11545 -9.02281 -8.76717 -8.34426 -8.11308 -7.36188 -6.20274 -4.13783 1.93630 2.51611 2.99314 3.15905 3.27654 3.31960 3.98330 4.26520 4.53418 4.62913 4.86413 5.00052 5.09955 5.22088 5.25805 5.31533 5.39627 5.46264 5.67592 5.76820 5.81070 5.87337 5.93990 6.01733 6.06448 6.27268 6.32856 6.34942 6.49534 6.58124 6.62893 6.71096 6.80411 6.95494 7.04069 7.06013 7.19856 7.33719 7.38451 7.47936 7.76567 7.81586 7.89042 7.99307 8.35765 8.76855 9.38659 10.83405 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.005414 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.991659 B = 5170.890391 C = 5544.428859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 N -0.301 5.301 4 C 0.042 3.958 5 C -0.245 4.245 6 C 0.095 3.905 7 C 0.161 3.839 8 H 0.066 0.934 9 C 0.018 3.982 10 N -0.527 5.527 11 C 0.083 3.917 12 C 0.025 3.975 13 C -0.489 4.489 14 H 0.060 0.940 15 C 0.077 3.923 16 N -0.869 5.869 17 Si 0.876 3.124 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.277 1.277 21 C -0.215 4.215 22 C -0.198 4.198 23 C 0.014 3.986 24 C 0.063 3.937 25 O -0.374 6.374 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.182 0.818 30 H 0.150 0.850 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 8.874 -7.662 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.154 5.154 3 N -0.123 5.123 4 C -0.143 4.143 5 C -0.274 4.274 6 C -0.033 4.033 7 C 0.101 3.899 8 H 0.084 0.916 9 C -0.111 4.111 10 N -0.250 5.250 11 C -0.044 4.044 12 C 0.023 3.977 13 C -0.526 4.526 14 H 0.078 0.922 15 C -0.127 4.127 16 N -0.505 5.505 17 Si 0.703 3.297 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.252 4.252 22 C -0.237 4.237 23 C -0.114 4.114 24 C -0.014 4.014 25 O -0.292 6.292 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.199 0.801 30 H 0.168 0.832 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.057 9.719 -8.067 13.266 hybrid contribution 1.682 -1.347 0.401 2.192 sum -2.375 8.372 -7.666 11.597 Atomic orbital electron populations 1.21862 0.74625 1.04277 1.03530 1.48350 1.06339 1.03044 1.57692 1.77309 1.01943 1.07573 1.25436 1.23832 0.95109 0.95195 1.00172 1.21264 0.96730 0.94453 1.14972 1.20597 0.91608 0.89369 1.01711 1.20273 0.91373 0.84143 0.94134 0.91638 1.23077 1.02258 0.91775 0.93969 1.62720 1.43979 1.00572 1.17721 1.21932 0.94332 1.03411 0.84698 1.19653 0.95935 0.89536 0.92538 1.20454 0.92085 0.91206 1.48881 0.92159 1.24905 0.95114 0.97803 0.94839 1.69887 1.23159 1.13535 1.43949 0.86777 0.82072 0.80857 0.79968 1.19429 1.21053 1.20269 1.23091 0.99490 0.95595 1.07009 1.22918 0.99160 1.06820 0.94770 1.22931 0.98211 0.97689 0.92585 1.22844 1.00311 0.80587 0.97675 1.87921 1.47216 1.18469 1.75578 0.90627 0.89385 0.89513 0.80088 0.83220 0.91486 0.90298 0.86169 0.94242 0.92626 0.90997 0.90829 0.90644 0.91939 0.89608 0.90285 0.88769 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 11.27 59.85 0.67 1.69 16 2 N -0.37 -5.35 4.01 -63.89 -0.26 -5.61 16 3 N -0.30 -4.60 12.58 30.63 0.39 -4.21 16 4 C 0.04 0.59 12.03 -17.36 -0.21 0.38 16 5 C -0.25 -3.79 10.31 -40.01 -0.41 -4.21 16 6 C 0.09 1.48 6.03 -82.26 -0.50 0.99 16 7 C 0.16 2.58 3.03 -27.83 -0.08 2.49 16 8 H 0.07 0.97 7.06 -51.93 -0.37 0.61 16 9 C 0.02 0.32 3.33 -3.71 -0.01 0.31 16 10 N -0.53 -10.25 4.94 -234.30 -1.16 -11.41 16 11 C 0.08 1.83 5.30 -3.82 -0.02 1.81 16 12 C 0.03 0.58 1.36 -155.66 -0.21 0.37 16 13 C -0.49 -12.36 6.34 -34.44 -0.22 -12.58 16 14 H 0.06 1.58 7.88 -52.49 -0.41 1.17 16 15 C 0.08 1.93 4.39 -17.82 -0.08 1.85 16 16 N -0.87 -22.50 11.21 55.43 0.62 -21.88 16 17 Si 0.88 19.53 29.58 -169.99 -5.03 14.50 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 21 C -0.21 -4.55 7.49 -26.73 -0.20 -4.75 16 22 C -0.20 -4.44 9.88 -26.73 -0.26 -4.71 16 23 C 0.01 0.27 4.49 -3.71 -0.02 0.25 16 24 C 0.06 1.02 7.01 37.21 0.26 1.28 16 25 O -0.37 -6.43 10.11 -35.23 -0.36 -6.79 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.77 7.04 -51.93 -0.37 0.41 16 29 H 0.18 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.07 1.15 7.71 -51.93 -0.40 0.75 16 32 H 0.08 1.58 4.82 -51.93 -0.25 1.33 16 33 H 0.12 2.95 5.57 -51.92 -0.29 2.66 16 34 H 0.04 0.84 7.97 -51.93 -0.41 0.42 16 35 H 0.26 6.54 8.32 -40.82 -0.34 6.20 16 36 H 0.07 1.43 5.86 -51.93 -0.30 1.12 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 39 H 0.06 1.33 8.10 -51.93 -0.42 0.90 16 40 H 0.09 1.90 5.54 -51.93 -0.29 1.62 16 41 H 0.08 1.63 8.02 -51.93 -0.42 1.22 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -27.91 334.85 -8.48 -36.38 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.45 Total: 8.77 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.29 Total: -14.81 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.41 Total: -43.11 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.36 Total: -6.79 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.91 -8.48 -36.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933539385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.719 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds