Wall clock time and date at job start Tue Mar 31 2020 07:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40088 * 126.03838 * 2 1 4 4 C 1.30833 * 108.20583 * 179.97438 * 3 2 1 5 5 C 1.39879 * 108.20340 * 359.77299 * 4 3 2 6 6 C 1.34946 * 126.03758 * 179.97438 * 2 1 3 7 7 C 1.50707 * 126.12517 * 359.97438 * 6 2 1 8 8 H 1.08991 * 109.50710 * 29.14895 * 7 6 2 9 9 C 1.53102 * 109.50434 * 269.01877 * 7 6 2 10 10 N 1.47012 * 109.25407 * 183.21764 * 9 7 6 11 11 C 1.46900 * 110.99493 * 182.39343 * 10 9 7 12 12 C 1.53006 * 109.47203 * 302.35621 * 11 10 9 13 13 C 1.50699 * 115.56062 * 281.97486 * 12 11 10 14 14 H 1.07998 * 119.99957 * 139.81897 * 13 12 11 15 15 C 1.37875 * 119.99978 * 319.81112 * 13 12 11 16 16 N 1.31513 * 120.00535 * 341.62915 * 15 13 12 17 17 Si 1.86800 * 119.99578 * 161.63266 * 15 13 12 18 18 H 1.48503 * 109.47451 * 4.97453 * 17 15 13 19 19 H 1.48499 * 109.47274 * 124.97739 * 17 15 13 20 20 H 1.48501 * 109.47046 * 244.97285 * 17 15 13 21 21 C 1.52998 * 117.49479 * 67.66542 * 12 11 10 22 22 C 1.53004 * 117.49479 * 136.28718 * 12 11 10 23 23 C 1.47019 * 110.75439 * 58.61858 * 10 9 7 24 24 C 1.53095 * 109.25371 * 301.37996 * 23 10 9 25 25 O 1.43013 * 109.26037 * 56.85462 * 24 23 10 26 26 H 1.08998 * 109.47329 * 270.02763 * 1 2 3 27 27 H 1.09002 * 109.46942 * 30.02922 * 1 2 3 28 28 H 1.09000 * 109.46966 * 150.02701 * 1 2 3 29 29 H 1.08004 * 125.89915 * 180.02562 * 4 3 2 30 30 H 1.07996 * 126.04045 * 180.23644 * 5 4 3 31 31 H 1.08995 * 109.50389 * 63.28505 * 9 7 6 32 32 H 1.09006 * 109.50459 * 303.15157 * 9 7 6 33 33 H 1.09008 * 109.47194 * 182.36048 * 11 10 9 34 34 H 1.08994 * 109.47587 * 62.36046 * 11 10 9 35 35 H 0.96996 * 120.00030 * 185.06030 * 16 15 13 36 36 H 1.08994 * 117.49898 * 359.97438 * 21 12 11 37 37 H 1.09005 * 117.49671 * 214.97553 * 21 12 11 38 38 H 1.08997 * 117.49470 * 145.02284 * 22 12 11 39 39 H 1.08994 * 117.49939 * 359.97438 * 22 12 11 40 40 H 1.09000 * 109.50554 * 61.31833 * 23 10 9 41 41 H 1.09001 * 109.50447 * 181.40505 * 23 10 9 42 42 H 1.09002 * 109.50391 * 176.78236 * 24 23 10 43 43 H 1.08997 * 109.51112 * 296.91216 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6666 0.0062 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0017 8 1 0.8315 -2.5978 -0.4983 9 6 1.6647 -3.0190 1.4450 10 7 1.2891 -4.4403 1.4391 11 6 1.0959 -4.9393 2.8072 12 6 2.3781 -4.7250 3.6141 13 6 3.4826 -5.7171 3.3555 14 1 4.5078 -5.3818 3.3015 15 6 3.1843 -7.0527 3.1879 16 7 2.0280 -7.5250 3.5996 17 14 4.4226 -8.1914 2.3760 18 1 5.6817 -7.4484 2.1151 19 1 4.7027 -9.3398 3.2749 20 1 3.8679 -8.6915 1.0924 21 6 2.7826 -3.2832 3.9279 22 6 2.2345 -4.1827 5.0376 23 6 2.2924 -5.2414 0.7229 24 6 2.4186 -4.7259 -0.7131 25 8 2.7535 -3.3358 -0.6876 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 4.4054 1.3710 0.0011 30 1 4.4210 -1.2963 0.0116 31 1 0.8957 -2.4414 1.9578 32 1 2.6173 -2.8964 1.9605 33 1 0.8598 -6.0030 2.7761 34 1 0.2752 -4.3987 3.2787 35 1 1.8471 -8.4766 3.5490 36 1 2.1355 -2.4874 3.5591 37 1 3.8477 -3.0521 3.9472 38 1 2.9391 -4.5435 5.7870 39 1 1.2268 -3.9783 5.3991 40 1 3.2550 -5.1543 1.2269 41 1 1.9819 -6.2861 0.7093 42 1 3.2019 -5.2794 -1.2310 43 1 1.4707 -4.8625 -1.2335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933539385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:20 Heat of formation + Delta-G solvation = 68.810768 kcal Electronic energy + Delta-G solvation = -24875.441544 eV Core-core repulsion = 21537.562193 eV Total energy + Delta-G solvation = -3337.879351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30416 -40.74109 -38.63096 -35.36755 -34.47852 -34.24358 -33.10389 -30.20155 -29.23325 -27.70886 -27.56877 -25.37808 -24.94690 -23.14853 -22.15345 -21.52439 -20.81593 -20.55880 -18.32037 -17.90970 -17.18037 -16.82487 -16.64713 -16.38069 -15.94858 -15.79405 -15.67548 -15.33524 -14.69965 -14.65922 -14.47231 -14.03050 -13.64387 -13.55394 -13.41751 -13.20765 -12.97145 -12.86410 -12.62035 -12.42253 -12.32706 -11.98705 -11.91524 -11.73580 -11.67615 -11.37063 -10.92452 -10.75000 -10.60294 -10.20262 -9.96341 -9.47004 -8.99699 -8.13453 -6.11159 0.80398 1.36267 1.44012 1.50960 1.51933 1.87511 2.40271 2.77725 2.91941 3.14995 3.58720 3.67765 3.73477 3.95847 4.03539 4.21000 4.30815 4.35908 4.39839 4.42885 4.50562 4.51967 4.62070 4.66232 4.68735 4.75450 4.80193 4.85295 4.85858 4.98355 5.07968 5.16254 5.26411 5.36526 5.48073 5.54369 5.56983 5.73906 5.91741 5.97745 6.16512 6.22741 6.30079 6.48675 6.71853 6.80783 7.42817 8.89673 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.005414 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.991659 B = 5170.890391 C = 5544.428859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.370 5.370 3 N -0.319 5.319 4 C 0.044 3.956 5 C -0.263 4.263 6 C 0.083 3.917 7 C 0.169 3.831 8 H 0.084 0.916 9 C 0.025 3.975 10 N -0.520 5.520 11 C 0.092 3.908 12 C 0.007 3.993 13 C -0.501 4.501 14 H 0.041 0.959 15 C 0.049 3.951 16 N -0.890 5.890 17 Si 0.923 3.077 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.191 4.191 22 C -0.204 4.204 23 C 0.019 3.981 24 C 0.068 3.932 25 O -0.383 6.383 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.213 0.787 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 9.846 -8.961 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.154 5.154 3 N -0.141 5.141 4 C -0.141 4.141 5 C -0.293 4.293 6 C -0.045 4.045 7 C 0.109 3.891 8 H 0.102 0.898 9 C -0.104 4.104 10 N -0.243 5.243 11 C -0.036 4.036 12 C 0.006 3.994 13 C -0.538 4.538 14 H 0.059 0.941 15 C -0.153 4.153 16 N -0.527 5.527 17 Si 0.749 3.251 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.228 4.228 22 C -0.243 4.243 23 C -0.110 4.110 24 C -0.008 4.008 25 O -0.302 6.302 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.229 0.771 30 H 0.163 0.837 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.685 10.706 -9.372 14.980 hybrid contribution 1.878 -1.616 0.837 2.615 sum -2.807 9.090 -8.535 12.781 Atomic orbital electron populations 1.22211 0.72517 1.05902 1.04660 1.48658 1.07586 1.02326 1.56880 1.77276 1.02559 1.08260 1.26033 1.24307 0.95764 0.94962 0.99035 1.21424 0.96790 0.95349 1.15697 1.20575 0.92088 0.89440 1.02433 1.20212 0.92002 0.84182 0.92735 0.89789 1.23004 1.01233 0.90668 0.95495 1.62717 1.43916 1.01503 1.16137 1.21700 0.93809 1.02083 0.85963 1.19728 0.96214 0.90340 0.93158 1.20500 0.91786 0.92131 1.49388 0.94080 1.25328 0.96371 0.98644 0.94915 1.69967 1.24298 1.13759 1.44677 0.86051 0.80310 0.79146 0.79564 1.19808 1.21282 1.19059 1.23001 0.99302 0.95064 1.05404 1.22928 0.99629 1.07381 0.94377 1.22807 0.96423 0.97216 0.94512 1.22868 1.02099 0.80321 0.95524 1.87922 1.47976 1.18758 1.75528 0.89703 0.87784 0.87990 0.77098 0.83730 0.90503 0.92588 0.88699 0.93616 0.92559 0.89261 0.91571 0.92046 0.90651 0.92564 0.91856 0.86988 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 11.27 127.77 1.44 2.99 16 2 N -0.37 -9.87 4.01 -356.03 -1.43 -11.30 16 3 N -0.32 -9.11 12.58 -57.02 -0.72 -9.82 16 4 C 0.04 1.15 12.03 85.24 1.03 2.17 16 5 C -0.26 -7.81 10.31 21.99 0.23 -7.58 16 6 C 0.08 2.45 6.03 41.41 0.25 2.70 16 7 C 0.17 5.05 3.03 29.88 0.09 5.14 16 8 H 0.08 2.22 7.06 -2.39 -0.02 2.21 16 9 C 0.02 0.85 3.33 86.32 0.29 1.14 16 10 N -0.52 -19.73 4.94 -895.18 -4.42 -24.15 16 11 C 0.09 4.03 5.30 86.31 0.46 4.49 16 12 C 0.01 0.34 1.36 -52.93 -0.07 0.27 16 13 C -0.50 -25.77 6.34 25.60 0.16 -25.61 16 14 H 0.04 2.22 7.88 -2.91 -0.02 2.20 16 15 C 0.05 2.50 4.39 84.65 0.37 2.87 16 16 N -0.89 -46.55 11.21 21.45 0.24 -46.31 16 17 Si 0.92 40.31 29.58 68.60 2.03 42.34 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 C -0.19 -8.00 7.49 30.60 0.23 -7.77 16 22 C -0.20 -9.16 9.88 30.60 0.30 -8.85 16 23 C 0.02 0.72 4.49 86.31 0.39 1.11 16 24 C 0.07 2.10 7.01 72.01 0.50 2.61 16 25 O -0.38 -12.50 10.11 -148.98 -1.51 -14.01 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.48 7.04 -2.39 -0.02 1.47 16 29 H 0.21 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.08 2.46 7.71 -2.39 -0.02 2.44 16 32 H 0.06 2.20 4.82 -2.38 -0.01 2.19 16 33 H 0.10 4.70 5.57 -2.38 -0.01 4.69 16 34 H 0.05 1.90 7.97 -2.39 -0.02 1.88 16 35 H 0.26 13.23 8.32 -92.71 -0.77 12.46 16 36 H 0.09 3.42 5.86 -2.39 -0.01 3.41 16 37 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 40 H 0.06 2.52 5.54 -2.39 -0.01 2.50 16 41 H 0.06 2.61 8.02 -2.39 -0.02 2.59 16 42 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -59.28 334.85 0.86 -58.42 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 1.00 Total: 29.17 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 5.66 Total: -24.34 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -6.32 Total: -91.59 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -1.51 Total: -14.01 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -59.28 0.86 -58.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933539385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.232 kcal (2) G-P(sol) polarization free energy of solvation -59.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds