Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47358 * 2 1 4 4 C 1.35533 * 125.67882 * 265.78482 * 3 2 1 5 5 C 1.35454 * 108.87347 * 179.97438 * 4 3 2 6 6 C 1.39836 * 107.86360 * 359.75108 * 5 4 3 7 7 C 1.37651 * 125.67855 * 85.76932 * 3 2 1 8 8 C 1.46674 * 126.23235 * 0.02562 * 7 3 2 9 9 O 1.21695 * 120.00144 * 353.83044 * 8 7 3 10 10 N 1.34780 * 120.00167 * 173.83269 * 8 7 3 11 11 C 1.47022 * 125.64900 * 174.72895 * 10 8 7 12 12 C 1.54327 * 107.26823 * 178.98483 * 11 10 8 13 13 H 1.09005 * 110.71758 * 96.17855 * 12 11 10 14 14 C 1.53005 * 110.87208 * 219.37506 * 12 11 10 15 15 C 1.55156 * 102.94489 * 337.81090 * 12 11 10 16 16 H 1.08996 * 111.00320 * 277.42666 * 15 12 11 17 17 N 1.46501 * 111.00431 * 153.57319 * 15 12 11 18 18 C 1.36934 * 119.99939 * 154.99532 * 17 15 12 19 19 H 1.08002 * 120.00132 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99927 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99891 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99843 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47128 * 89.99611 * 22 20 18 24 24 H 1.48502 * 109.46949 * 209.99383 * 22 20 18 25 25 H 1.48499 * 109.47343 * 329.99359 * 22 20 18 26 26 C 1.47428 * 125.64586 * 354.78786 * 10 8 7 27 27 H 1.09001 * 109.47311 * 295.03670 * 1 2 3 28 28 H 1.09009 * 109.46589 * 55.03240 * 1 2 3 29 29 H 1.08996 * 109.47767 * 175.03079 * 1 2 3 30 30 H 1.08996 * 109.47081 * 239.99713 * 2 1 3 31 31 H 1.08998 * 109.46779 * 120.00460 * 2 1 3 32 32 H 1.08004 * 125.56337 * 359.96473 * 4 3 2 33 33 H 1.08001 * 126.06858 * 179.97438 * 5 4 3 34 34 H 1.08000 * 126.45715 * 180.26567 * 6 5 4 35 35 H 1.08999 * 109.87891 * 59.57296 * 11 10 8 36 36 H 1.08996 * 109.88886 * 298.40543 * 11 10 8 37 37 H 1.08996 * 109.47265 * 173.61271 * 14 12 11 38 38 H 1.08999 * 109.46844 * 293.61368 * 14 12 11 39 39 H 1.08997 * 109.46778 * 53.61083 * 14 12 11 40 40 H 0.96995 * 120.00198 * 335.00698 * 17 15 12 41 41 H 0.97001 * 120.00067 * 180.02562 * 21 20 18 42 42 H 1.08999 * 110.36827 * 85.24112 * 26 10 8 43 43 H 1.09001 * 110.36329 * 322.91738 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3582 2.0994 -1.0980 5 6 2.7628 3.3317 -0.7074 6 6 2.6687 3.3924 0.6864 7 6 2.2082 2.1655 1.1151 8 6 1.9599 1.7703 2.5056 9 8 1.4412 0.6968 2.7497 10 7 2.3061 2.5960 3.5130 11 6 2.0181 2.3768 4.9380 12 6 2.6239 3.5642 5.7157 13 1 1.8680 4.3262 5.9063 14 6 3.2559 3.0918 7.0266 15 6 3.7092 4.0985 4.7442 16 1 4.6291 3.5202 4.8300 17 7 3.9636 5.5230 4.9732 18 6 5.1720 6.0668 4.6280 19 1 5.9374 5.4458 4.1866 20 6 5.4129 7.4167 4.8446 21 7 6.5742 7.9395 4.5123 22 14 4.0888 8.4910 5.6075 23 1 4.2349 8.4824 7.0852 24 1 4.2287 9.8812 5.1044 25 1 2.7504 7.9637 5.2392 26 6 3.0353 3.8691 3.3684 27 1 -0.3634 0.4349 0.9311 28 1 -0.3633 0.5890 -0.8422 29 1 -0.3634 -1.0237 -0.0890 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8899 32 1 2.3137 1.7467 -2.1178 33 1 3.0952 4.1275 -1.3575 34 1 2.9132 4.2397 1.3099 35 1 2.4755 1.4446 5.2695 36 1 0.9405 2.3405 5.0972 37 1 3.7738 3.9251 7.5013 38 1 2.4767 2.7212 7.6927 39 1 3.9673 2.2923 6.8194 40 1 3.2762 6.0809 5.3695 41 1 6.7426 8.8827 4.6639 42 1 2.3421 4.6802 3.1455 43 1 3.7894 3.7875 2.5855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939755341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = 38.338973 kcal Electronic energy + Delta-G solvation = -23806.260523 eV Core-core repulsion = 20467.059816 eV Total energy + Delta-G solvation = -3339.200707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38266 -39.45554 -37.46827 -34.52123 -33.97061 -32.57454 -31.11051 -29.40582 -29.30640 -27.98826 -26.10887 -24.12923 -23.48859 -22.22335 -20.84882 -20.57741 -20.02783 -18.90703 -17.59749 -17.07302 -16.13066 -16.07852 -15.20195 -14.97156 -14.46951 -14.35551 -14.06313 -13.82961 -13.43166 -13.27208 -13.20101 -12.80796 -12.65880 -12.42702 -12.36158 -12.24807 -12.01373 -11.83393 -11.73805 -11.37735 -11.28637 -11.08760 -10.68655 -10.64790 -10.39183 -9.99961 -9.83112 -9.64949 -9.04009 -8.67351 -8.46310 -8.08402 -7.39578 -5.84942 -3.23041 1.59465 2.62857 2.84512 3.32471 3.34974 3.36629 3.42239 3.54091 4.51553 4.57292 4.61159 4.91263 4.94896 5.00281 5.03846 5.09887 5.15650 5.39899 5.40582 5.47299 5.52576 5.58085 5.67781 5.69398 5.74173 5.78652 5.84490 5.98123 6.08827 6.10998 6.20787 6.25785 6.30350 6.35392 6.44032 6.52219 6.73629 6.90164 7.08441 7.28462 7.69885 7.89453 8.31764 8.33842 9.10036 9.82046 10.00071 11.32668 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.004541 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.128485 B = 6164.943414 C = 7250.894286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.412 5.412 4 C 0.009 3.991 5 C -0.208 4.208 6 C -0.145 4.145 7 C -0.048 4.048 8 C 0.600 3.400 9 O -0.563 6.563 10 N -0.601 5.601 11 C 0.121 3.879 12 C -0.119 4.119 13 H 0.082 0.918 14 C -0.135 4.135 15 C 0.181 3.819 16 H 0.078 0.922 17 N -0.733 5.733 18 C -0.253 4.253 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.928 5.928 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.064 3.936 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.071 0.929 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -13.549 -6.779 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.086 5.086 4 C -0.126 4.126 5 C -0.232 4.232 6 C -0.171 4.171 7 C -0.161 4.161 8 C 0.391 3.609 9 O -0.445 6.445 10 N -0.334 5.334 11 C -0.001 4.001 12 C -0.139 4.139 13 H 0.100 0.900 14 C -0.193 4.193 15 C 0.069 3.931 16 H 0.096 0.904 17 N -0.374 5.374 18 C -0.382 4.382 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.062 4.062 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.233 -14.466 -6.737 19.515 hybrid contribution -0.891 1.032 0.286 1.393 sum -12.124 -13.434 -6.450 19.211 Atomic orbital electron populations 1.22070 0.94220 1.02575 1.03141 1.21942 0.95900 0.79891 1.04422 1.44001 1.47829 1.11580 1.05150 1.21959 1.06001 0.93188 0.91404 1.20901 1.09516 0.97420 0.95398 1.22152 1.02442 0.96757 0.95748 1.19943 1.15387 0.93271 0.87501 1.16603 0.78269 0.83053 0.82985 1.90739 1.46287 1.22460 1.84999 1.48050 1.56148 1.22849 1.06307 1.21961 0.99938 0.98716 0.79520 1.22577 0.98853 0.96589 0.95884 0.89984 1.21673 1.00142 1.01692 0.95757 1.21372 0.95323 0.86667 0.89690 0.90386 1.42638 1.15859 1.04073 1.74851 1.19075 0.90603 0.93357 1.35191 0.88940 1.24663 0.96503 0.96616 1.00736 1.69695 1.22214 1.12920 1.52678 0.86598 0.81994 0.80714 0.79478 1.20982 1.21658 1.20231 1.23851 0.95701 0.83752 1.02875 0.91237 0.92496 0.91027 0.89706 0.88015 0.81797 0.84056 0.82179 0.91312 0.91893 0.91341 0.93123 0.92566 0.80246 0.92899 0.91045 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.19 37.16 0.38 -1.25 16 2 C 0.10 1.08 6.10 -4.05 -0.02 1.05 16 3 N -0.41 -5.46 2.76 -112.88 -0.31 -5.77 16 4 C 0.01 0.11 11.37 -16.91 -0.19 -0.08 16 5 C -0.21 -2.73 10.81 -39.98 -0.43 -3.17 16 6 C -0.15 -2.20 9.16 -39.12 -0.36 -2.56 16 7 C -0.05 -0.76 6.83 -81.98 -0.56 -1.32 16 8 C 0.60 10.12 7.80 -12.85 -0.10 10.02 16 9 O -0.56 -10.20 14.56 5.19 0.08 -10.12 16 10 N -0.60 -9.61 3.33 -172.06 -0.57 -10.19 16 11 C 0.12 1.74 6.47 -3.06 -0.02 1.72 16 12 C -0.12 -1.73 3.19 -88.78 -0.28 -2.02 16 13 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 14 C -0.14 -1.78 9.17 37.16 0.34 -1.44 16 15 C 0.18 3.21 3.16 -65.78 -0.21 3.01 16 16 H 0.08 1.46 8.00 -51.93 -0.42 1.04 16 17 N -0.73 -15.82 5.05 -51.35 -0.26 -16.08 16 18 C -0.25 -6.64 10.44 -15.06 -0.16 -6.79 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -27.98 13.97 55.49 0.78 -27.20 16 22 Si 0.88 20.99 27.74 -169.99 -4.71 16.27 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 26 C 0.06 1.05 4.79 -2.53 -0.01 1.04 16 27 H 0.07 0.88 7.55 -51.93 -0.39 0.49 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 31 H 0.10 1.27 6.72 -51.93 -0.35 0.92 16 32 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.16 2.47 4.75 -52.49 -0.25 2.22 16 35 H 0.07 0.97 7.78 -51.93 -0.40 0.56 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.36 7.75 5.62 -40.82 -0.23 7.52 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.20 7.76 -51.93 -0.40 0.80 16 43 H 0.09 1.50 5.85 -51.93 -0.30 1.19 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -31.22 344.55 -8.09 -39.31 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.55 Total: 10.13 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.72 Total: -1.55 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.37 Total: -59.24 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.22 -8.09 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939755341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.654 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds