Wall clock time and date at job start Tue Mar 31 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47358 * 2 1 4 4 C 1.35533 * 125.67882 * 265.78482 * 3 2 1 5 5 C 1.35454 * 108.87347 * 179.97438 * 4 3 2 6 6 C 1.39836 * 107.86360 * 359.75108 * 5 4 3 7 7 C 1.37651 * 125.67855 * 85.76932 * 3 2 1 8 8 C 1.46674 * 126.23235 * 0.02562 * 7 3 2 9 9 O 1.21695 * 120.00144 * 353.83044 * 8 7 3 10 10 N 1.34780 * 120.00167 * 173.83269 * 8 7 3 11 11 C 1.47022 * 125.64900 * 174.72895 * 10 8 7 12 12 C 1.54327 * 107.26823 * 178.98483 * 11 10 8 13 13 H 1.09005 * 110.71758 * 96.17855 * 12 11 10 14 14 C 1.53005 * 110.87208 * 219.37506 * 12 11 10 15 15 C 1.55156 * 102.94489 * 337.81090 * 12 11 10 16 16 H 1.08996 * 111.00320 * 277.42666 * 15 12 11 17 17 N 1.46501 * 111.00431 * 153.57319 * 15 12 11 18 18 C 1.36934 * 119.99939 * 154.99532 * 17 15 12 19 19 H 1.08002 * 120.00132 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99927 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99891 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99843 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47128 * 89.99611 * 22 20 18 24 24 H 1.48502 * 109.46949 * 209.99383 * 22 20 18 25 25 H 1.48499 * 109.47343 * 329.99359 * 22 20 18 26 26 C 1.47428 * 125.64586 * 354.78786 * 10 8 7 27 27 H 1.09001 * 109.47311 * 295.03670 * 1 2 3 28 28 H 1.09009 * 109.46589 * 55.03240 * 1 2 3 29 29 H 1.08996 * 109.47767 * 175.03079 * 1 2 3 30 30 H 1.08996 * 109.47081 * 239.99713 * 2 1 3 31 31 H 1.08998 * 109.46779 * 120.00460 * 2 1 3 32 32 H 1.08004 * 125.56337 * 359.96473 * 4 3 2 33 33 H 1.08001 * 126.06858 * 179.97438 * 5 4 3 34 34 H 1.08000 * 126.45715 * 180.26567 * 6 5 4 35 35 H 1.08999 * 109.87891 * 59.57296 * 11 10 8 36 36 H 1.08996 * 109.88886 * 298.40543 * 11 10 8 37 37 H 1.08996 * 109.47265 * 173.61271 * 14 12 11 38 38 H 1.08999 * 109.46844 * 293.61368 * 14 12 11 39 39 H 1.08997 * 109.46778 * 53.61083 * 14 12 11 40 40 H 0.96995 * 120.00198 * 335.00698 * 17 15 12 41 41 H 0.97001 * 120.00067 * 180.02562 * 21 20 18 42 42 H 1.08999 * 110.36827 * 85.24112 * 26 10 8 43 43 H 1.09001 * 110.36329 * 322.91738 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3582 2.0994 -1.0980 5 6 2.7628 3.3317 -0.7074 6 6 2.6687 3.3924 0.6864 7 6 2.2082 2.1655 1.1151 8 6 1.9599 1.7703 2.5056 9 8 1.4412 0.6968 2.7497 10 7 2.3061 2.5960 3.5130 11 6 2.0181 2.3768 4.9380 12 6 2.6239 3.5642 5.7157 13 1 1.8680 4.3262 5.9063 14 6 3.2559 3.0918 7.0266 15 6 3.7092 4.0985 4.7442 16 1 4.6291 3.5202 4.8300 17 7 3.9636 5.5230 4.9732 18 6 5.1720 6.0668 4.6280 19 1 5.9374 5.4458 4.1866 20 6 5.4129 7.4167 4.8446 21 7 6.5742 7.9395 4.5123 22 14 4.0888 8.4910 5.6075 23 1 4.2349 8.4824 7.0852 24 1 4.2287 9.8812 5.1044 25 1 2.7504 7.9637 5.2392 26 6 3.0353 3.8691 3.3684 27 1 -0.3634 0.4349 0.9311 28 1 -0.3633 0.5890 -0.8422 29 1 -0.3634 -1.0237 -0.0890 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8899 32 1 2.3137 1.7467 -2.1178 33 1 3.0952 4.1275 -1.3575 34 1 2.9132 4.2397 1.3099 35 1 2.4755 1.4446 5.2695 36 1 0.9405 2.3405 5.0972 37 1 3.7738 3.9251 7.5013 38 1 2.4767 2.7212 7.6927 39 1 3.9673 2.2923 6.8194 40 1 3.2762 6.0809 5.3695 41 1 6.7426 8.8827 4.6639 42 1 2.3421 4.6802 3.1455 43 1 3.7894 3.7875 2.5855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939755341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:54 Heat of formation + Delta-G solvation = 19.251227 kcal Electronic energy + Delta-G solvation = -23807.088229 eV Core-core repulsion = 20467.059816 eV Total energy + Delta-G solvation = -3340.028414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.45062 -40.72334 -38.82801 -36.04839 -35.15755 -33.94255 -32.93935 -30.48358 -30.28147 -29.52131 -27.24010 -25.78997 -24.49034 -23.60948 -22.18964 -21.70238 -21.37214 -20.01029 -19.51108 -18.19182 -17.47747 -17.37242 -16.45524 -16.20641 -15.99791 -15.45257 -15.39048 -14.95885 -14.84718 -14.70951 -14.44106 -14.29518 -14.01525 -13.59691 -13.45545 -13.28339 -13.11499 -13.07145 -12.92288 -12.86323 -12.73972 -12.20825 -12.13922 -12.02041 -11.92571 -11.78332 -11.41424 -11.12665 -10.91759 -9.82994 -9.66503 -9.34046 -9.13535 -7.98981 -5.34612 0.45275 1.42926 1.45502 1.52016 1.56575 1.81646 2.24263 2.32260 2.51764 3.26606 3.31547 3.65812 3.77062 3.81546 3.85233 4.05483 4.11522 4.16115 4.30973 4.35306 4.38454 4.44745 4.48927 4.55994 4.64863 4.76847 4.84175 4.85657 4.89499 5.05182 5.07865 5.13109 5.16981 5.19479 5.28116 5.34556 5.45174 5.79997 5.83956 6.00544 6.23869 6.34639 6.41384 7.04044 7.09538 7.81951 8.02265 9.22000 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.004541 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.128485 B = 6164.943414 C = 7250.894286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.414 5.414 4 C 0.032 3.968 5 C -0.227 4.227 6 C -0.158 4.158 7 C -0.081 4.081 8 C 0.595 3.405 9 O -0.581 6.581 10 N -0.603 5.603 11 C 0.122 3.878 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.132 4.132 15 C 0.174 3.826 16 H 0.064 0.936 17 N -0.733 5.733 18 C -0.232 4.232 19 H 0.059 0.941 20 C -0.056 4.056 21 N -0.981 5.981 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.300 1.300 25 H -0.249 1.249 26 C 0.079 3.921 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.209 0.791 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.370 0.630 41 H 0.258 0.742 42 H 0.071 0.929 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -14.723 -7.513 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.087 5.087 4 C -0.104 4.104 5 C -0.251 4.251 6 C -0.184 4.184 7 C -0.194 4.194 8 C 0.387 3.613 9 O -0.464 6.464 10 N -0.335 5.335 11 C 0.000 4.000 12 C -0.125 4.125 13 H 0.110 0.890 14 C -0.189 4.189 15 C 0.064 3.936 16 H 0.082 0.918 17 N -0.375 5.375 18 C -0.363 4.363 19 H 0.077 0.923 20 C -0.247 4.247 21 N -0.631 5.631 22 Si 0.777 3.223 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.173 1.173 26 C -0.046 4.046 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.099 0.901 32 H 0.226 0.774 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.204 0.796 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.513 -15.699 -7.454 22.014 hybrid contribution -0.159 1.262 0.414 1.338 sum -13.672 -14.437 -7.039 21.093 Atomic orbital electron populations 1.22011 0.93603 1.03911 1.01708 1.22141 0.96374 0.78741 1.05240 1.44284 1.47302 1.12324 1.04812 1.22647 1.02890 0.92193 0.92640 1.21190 1.10374 0.98920 0.94601 1.22189 1.02792 0.96451 0.97009 1.19890 1.17586 0.94201 0.87719 1.16857 0.77960 0.82822 0.83674 1.90717 1.47227 1.23064 1.85383 1.48064 1.56021 1.22419 1.07022 1.22048 1.00722 0.98688 0.78534 1.22500 0.97639 0.96689 0.95700 0.89017 1.21656 1.00842 1.01198 0.95229 1.21489 0.96093 0.84526 0.91542 0.91804 1.42510 1.14371 1.05641 1.74929 1.18991 0.91338 0.92954 1.32990 0.92281 1.25427 0.98826 0.98204 1.02293 1.69876 1.24849 1.13070 1.55309 0.85494 0.80319 0.77998 0.78458 1.20459 1.22698 1.17312 1.23508 0.95370 0.84242 1.01506 0.94521 0.91518 0.88730 0.85894 0.90149 0.77414 0.82508 0.83440 0.90870 0.90641 0.92741 0.90379 0.92475 0.79626 0.93352 0.91118 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.19 71.98 0.73 -2.06 16 2 C 0.10 1.85 6.10 86.38 0.53 2.38 16 3 N -0.41 -10.25 2.76 -511.05 -1.41 -11.66 16 4 C 0.03 0.65 11.37 83.48 0.95 1.60 16 5 C -0.23 -5.63 10.81 22.01 0.24 -5.40 16 6 C -0.16 -4.80 9.16 22.57 0.21 -4.59 16 7 C -0.08 -2.53 6.83 40.35 0.28 -2.26 16 8 C 0.59 20.10 7.80 86.45 0.67 20.78 16 9 O -0.58 -21.02 14.56 -4.33 -0.06 -21.09 16 10 N -0.60 -19.16 3.33 -816.48 -2.72 -21.88 16 11 C 0.12 3.34 6.47 86.73 0.56 3.90 16 12 C -0.11 -2.90 3.19 -9.60 -0.03 -2.93 16 13 H 0.09 2.40 8.00 -2.38 -0.02 2.38 16 14 C -0.13 -3.22 9.17 71.98 0.66 -2.56 16 15 C 0.17 6.14 3.16 46.38 0.15 6.29 16 16 H 0.06 2.44 8.00 -2.39 -0.02 2.43 16 17 N -0.73 -31.37 5.05 -316.37 -1.60 -32.97 16 18 C -0.23 -12.44 10.44 84.04 0.88 -11.57 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 20 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 21 N -0.98 -61.02 13.97 21.65 0.30 -60.71 16 22 Si 0.95 43.33 27.74 68.60 1.90 45.24 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 26 C 0.08 2.65 4.79 86.86 0.42 3.07 16 27 H 0.04 0.90 7.55 -2.39 -0.02 0.88 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.12 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.08 1.94 6.72 -2.39 -0.02 1.93 16 32 H 0.21 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.15 4.72 4.75 -2.91 -0.01 4.70 16 35 H 0.07 1.95 7.78 -2.39 -0.02 1.94 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.38 8.07 -2.39 -0.02 1.36 16 40 H 0.37 15.10 5.62 -92.71 -0.52 14.58 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.07 2.38 7.76 -2.39 -0.02 2.36 16 43 H 0.08 2.73 5.85 -2.39 -0.01 2.72 16 Total: -1.00 -69.79 344.55 3.55 -66.24 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.43 Total: 32.84 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 6.70 Total: 4.00 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -5.42 Total: -127.23 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.90 Total: 45.24 kcal Total: -69.79 3.55 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939755341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.492 kcal (2) G-P(sol) polarization free energy of solvation -69.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds