Wall clock time and date at job start Tue Mar 31 2020 07:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00359 * 2 1 4 4 O 1.21694 * 119.99920 * 178.65143 * 3 2 1 5 5 C 1.46681 * 119.99962 * 358.64917 * 3 2 1 6 6 C 1.37866 * 126.23694 * 170.69815 * 5 3 2 7 7 C 1.39832 * 107.08832 * 179.97438 * 6 5 3 8 8 C 1.35456 * 107.86473 * 0.02562 * 7 6 5 9 9 N 1.35531 * 108.87098 * 0.02562 * 8 7 6 10 10 H 0.96993 * 125.68069 * 180.02562 * 9 8 7 11 11 C 1.46505 * 119.99986 * 180.02562 * 2 1 3 12 12 H 1.08999 * 108.44725 * 180.02562 * 11 2 1 13 13 C 1.52565 * 108.51445 * 62.30530 * 11 2 1 14 14 C 1.51032 * 109.27755 * 153.60506 * 13 11 2 15 15 C 1.53947 * 109.96733 * 92.06944 * 14 13 11 16 16 N 1.47608 * 112.14262 * 319.41755 * 15 14 13 17 17 C 1.36942 * 118.64101 * 137.89070 * 16 15 14 18 18 H 1.08001 * 119.99931 * 317.89545 * 17 16 15 19 19 C 1.38811 * 119.99697 * 137.89932 * 17 16 15 20 20 N 1.31616 * 119.99797 * 162.38982 * 19 17 16 21 21 Si 1.86797 * 120.00238 * 342.38916 * 19 17 16 22 22 H 1.48503 * 109.47044 * 90.20752 * 21 19 17 23 23 H 1.48500 * 109.47502 * 210.21179 * 21 19 17 24 24 H 1.48504 * 109.46907 * 330.21311 * 21 19 17 25 25 C 1.44576 * 122.71372 * 317.87109 * 16 15 14 26 26 C 1.47099 * 108.50808 * 297.68724 * 11 2 1 27 27 H 1.08998 * 109.47662 * 84.23504 * 1 2 3 28 28 H 1.08993 * 109.47445 * 204.24408 * 1 2 3 29 29 H 1.09005 * 109.47048 * 324.24014 * 1 2 3 30 30 H 1.08003 * 126.45348 * 0.24344 * 6 5 3 31 31 H 1.08004 * 126.06811 * 180.02562 * 7 6 5 32 32 H 1.07996 * 125.55964 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.49143 * 273.70562 * 13 11 2 34 34 H 1.09003 * 109.48712 * 33.76874 * 13 11 2 35 35 H 1.09004 * 109.44354 * 331.90940 * 14 13 11 36 36 H 1.09001 * 109.31619 * 212.14703 * 14 13 11 37 37 H 1.09001 * 108.95075 * 198.73549 * 15 14 13 38 38 H 1.09002 * 108.95046 * 80.10291 * 15 14 13 39 39 H 0.97002 * 120.00227 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.44645 * 330.68606 * 25 16 15 41 41 H 1.09000 * 109.42794 * 210.75482 * 25 16 15 42 42 H 1.08997 * 109.32872 * 304.31743 * 26 11 2 43 43 H 1.08997 * 109.32876 * 63.79455 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3556 1.1672 0.0248 5 6 1.4059 2.4373 -0.0299 6 6 1.9452 3.6938 0.1460 7 6 0.8947 4.6105 0.0390 8 6 -0.2429 3.9134 -0.1947 9 7 0.0539 2.5917 -0.2380 10 1 -0.5804 1.8742 -0.3915 11 6 2.1975 -1.2688 -0.0006 12 1 3.2654 -1.0505 0.0000 13 6 1.8574 -2.0239 -1.2819 14 6 3.0009 -2.9446 -1.6364 15 6 2.7665 -4.3356 -1.0198 16 7 2.2197 -4.2525 0.3487 17 6 1.2159 -5.1120 0.7078 18 1 0.4088 -5.3171 0.0201 19 6 1.2357 -5.7195 1.9558 20 7 0.1376 -6.2565 2.4437 21 14 2.8208 -5.7750 2.9425 22 1 2.9078 -4.5711 3.8075 23 1 2.8344 -6.9949 3.7892 24 1 3.9804 -5.8031 2.0152 25 6 2.7004 -3.3015 1.3258 26 6 1.8696 -1.9978 1.2343 27 1 -0.3634 0.1032 -1.0224 28 1 -0.3634 -0.9369 0.4219 29 1 -0.3633 0.8340 0.6006 30 1 2.9841 3.9266 0.3276 31 1 0.9760 5.6839 0.1271 32 1 -1.2261 4.3410 -0.3245 33 1 0.9501 -2.6085 -1.1296 34 1 1.7002 -1.3124 -2.0925 35 1 3.9328 -2.5308 -1.2511 36 1 3.0671 -3.0364 -2.7205 37 1 3.7139 -4.8739 -0.9902 38 1 2.0670 -4.8878 -1.6475 39 1 0.1513 -6.6807 3.3160 40 1 3.7491 -3.0782 1.1295 41 1 2.6006 -3.7261 2.3247 42 1 2.0917 -1.3673 2.0952 43 1 0.8082 -2.2455 1.2360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948180698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:03 Heat of formation + Delta-G solvation = 62.625351 kcal Electronic energy + Delta-G solvation = -24280.448236 eV Core-core repulsion = 20942.300666 eV Total energy + Delta-G solvation = -3338.147570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57638 -39.66357 -37.74131 -35.61295 -33.24517 -31.91669 -31.28202 -30.84718 -29.15376 -27.23382 -26.19538 -24.77188 -23.21175 -22.27866 -20.98231 -20.16135 -19.69739 -19.39070 -17.76662 -16.70314 -16.63212 -15.88101 -15.54201 -15.09602 -14.56306 -14.20024 -14.09355 -13.86394 -13.72809 -13.35575 -13.14443 -13.05594 -12.74521 -12.59817 -12.43966 -12.21596 -12.00942 -11.89289 -11.57915 -10.91269 -10.86669 -10.54969 -10.30856 -10.26346 -10.00956 -9.86833 -9.73970 -9.54144 -9.14757 -8.68101 -8.52879 -8.30176 -6.76608 -6.02280 -3.50842 1.42596 2.62225 2.88694 3.12606 3.28865 3.41098 3.44858 3.50634 4.48836 4.49683 4.80360 4.88271 4.98618 5.06276 5.14762 5.21440 5.27611 5.33782 5.43622 5.49781 5.55993 5.76600 5.85664 5.93887 6.01102 6.01697 6.13635 6.23161 6.26182 6.39067 6.52019 6.56123 6.57229 6.68544 6.75334 6.78462 6.80999 6.85493 6.94416 7.20873 7.45069 8.08765 8.19830 8.36532 9.01724 9.68608 10.07751 11.12817 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.004208 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.235017 B = 6652.574797 C = 6857.498719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.609 5.609 3 C 0.584 3.416 4 O -0.534 6.534 5 C -0.048 4.048 6 C -0.113 4.113 7 C -0.213 4.213 8 C 0.010 3.990 9 N -0.546 5.546 10 H 0.422 0.578 11 C 0.155 3.845 12 H 0.091 0.909 13 C -0.111 4.111 14 C -0.132 4.132 15 C 0.148 3.852 16 N -0.604 5.604 17 C -0.273 4.273 18 H 0.076 0.924 19 C 0.038 3.962 20 N -0.905 5.905 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.302 1.302 24 H -0.270 1.270 25 C 0.149 3.851 26 C -0.151 4.151 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.169 0.831 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.057 0.943 39 H 0.263 0.737 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 17.451 -6.374 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.342 5.342 3 C 0.373 3.627 4 O -0.411 6.411 5 C -0.161 4.161 6 C -0.140 4.140 7 C -0.237 4.237 8 C -0.126 4.126 9 N -0.150 5.150 10 H 0.268 0.732 11 C 0.054 3.946 12 H 0.109 0.891 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.023 3.977 16 N -0.327 5.327 17 C -0.402 4.402 18 H 0.093 0.907 19 C -0.163 4.163 20 N -0.546 5.546 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.194 1.194 25 C 0.021 3.979 26 C -0.192 4.192 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.159 17.134 -6.283 18.287 hybrid contribution 0.244 -0.253 0.651 0.740 sum -0.915 16.882 -5.632 17.820 Atomic orbital electron populations 1.22140 0.81114 1.04498 1.01033 1.48173 1.06455 1.06560 1.72975 1.17181 0.86824 0.82031 0.76675 1.90812 1.12594 1.86565 1.51087 1.20528 0.83275 0.95498 1.16784 1.21315 0.99684 0.90031 1.02954 1.20893 0.92188 0.99530 1.11110 1.22090 1.00361 0.83097 1.07016 1.43278 1.08201 1.08548 1.54963 0.73226 1.20225 0.97288 0.81028 0.96092 0.89142 1.21321 1.00654 0.97698 0.95292 1.21802 0.97896 0.97572 0.99903 1.21273 0.96866 0.93181 0.86402 1.43892 1.42763 1.37367 1.08706 1.18807 0.99863 1.19959 1.01562 0.90664 1.25546 0.96396 0.96340 0.98001 1.69814 1.26336 1.40160 1.18268 0.86883 0.86022 0.75806 0.79730 1.21199 1.23056 1.19433 1.21054 0.94538 0.88202 0.94073 1.21748 1.03474 0.98516 0.95445 0.92468 0.88589 0.91349 0.83668 0.84137 0.81387 0.90192 0.93097 0.92545 0.92059 0.96334 0.92416 0.92691 0.94392 0.92449 0.92910 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.20 59.84 0.49 1.10 16 2 N -0.61 -8.94 2.59 -179.03 -0.46 -9.40 16 3 C 0.58 9.35 7.64 -12.85 -0.10 9.25 16 4 O -0.53 -10.32 16.19 5.19 0.08 -10.24 16 5 C -0.05 -0.64 6.65 -81.98 -0.55 -1.18 16 6 C -0.11 -1.43 10.67 -39.12 -0.42 -1.85 16 7 C -0.21 -2.11 10.81 -39.98 -0.43 -2.55 16 8 C 0.01 0.09 11.89 -16.91 -0.20 -0.11 16 9 N -0.55 -5.34 5.05 -9.39 -0.05 -5.39 16 10 H 0.42 3.21 4.92 -40.82 -0.20 3.01 16 11 C 0.15 2.59 1.96 -70.98 -0.14 2.45 16 12 H 0.09 1.67 6.02 -51.93 -0.31 1.36 16 13 C -0.11 -1.77 4.62 -27.94 -0.13 -1.90 16 14 C -0.13 -2.13 5.72 -27.23 -0.16 -2.28 16 15 C 0.15 2.85 6.24 -2.94 -0.02 2.83 16 16 N -0.60 -13.71 1.80 -172.09 -0.31 -14.02 16 17 C -0.27 -7.29 9.70 -15.06 -0.15 -7.44 16 18 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 19 C 0.04 1.06 5.33 -17.43 -0.09 0.97 16 20 N -0.90 -26.88 13.97 55.49 0.78 -26.10 16 21 Si 0.88 22.15 25.10 -169.99 -4.27 17.88 16 22 H -0.28 -6.91 6.53 56.52 0.37 -6.54 16 23 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.19 4.44 -4.09 -0.02 3.17 16 26 C -0.15 -2.82 4.91 -28.58 -0.14 -2.96 16 27 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 28 H 0.10 1.15 6.51 -51.93 -0.34 0.81 16 29 H 0.07 0.63 5.25 -51.93 -0.27 0.36 16 30 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 34 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 41 H 0.06 1.36 3.15 -51.93 -0.16 1.20 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.46 6.70 -51.93 -0.35 1.11 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.36 328.22 -7.50 -39.86 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.18 Total: 2.95 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.04 Total: -0.49 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.04 Total: -54.91 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.27 Total: 17.88 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.36 -7.50 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948180698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.484 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds