Wall clock time and date at job start Tue Mar 31 2020 07:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00359 * 2 1 4 4 O 1.21694 * 119.99920 * 178.65143 * 3 2 1 5 5 C 1.46681 * 119.99962 * 358.64917 * 3 2 1 6 6 C 1.37866 * 126.23694 * 170.69815 * 5 3 2 7 7 C 1.39832 * 107.08832 * 179.97438 * 6 5 3 8 8 C 1.35456 * 107.86473 * 0.02562 * 7 6 5 9 9 N 1.35531 * 108.87098 * 0.02562 * 8 7 6 10 10 H 0.96993 * 125.68069 * 180.02562 * 9 8 7 11 11 C 1.46505 * 119.99986 * 180.02562 * 2 1 3 12 12 H 1.08999 * 108.44725 * 180.02562 * 11 2 1 13 13 C 1.52565 * 108.51445 * 62.30530 * 11 2 1 14 14 C 1.51032 * 109.27755 * 153.60506 * 13 11 2 15 15 C 1.53947 * 109.96733 * 92.06944 * 14 13 11 16 16 N 1.47608 * 112.14262 * 319.41755 * 15 14 13 17 17 C 1.36942 * 118.64101 * 137.89070 * 16 15 14 18 18 H 1.08001 * 119.99931 * 317.89545 * 17 16 15 19 19 C 1.38811 * 119.99697 * 137.89932 * 17 16 15 20 20 N 1.31616 * 119.99797 * 162.38982 * 19 17 16 21 21 Si 1.86797 * 120.00238 * 342.38916 * 19 17 16 22 22 H 1.48503 * 109.47044 * 90.20752 * 21 19 17 23 23 H 1.48500 * 109.47502 * 210.21179 * 21 19 17 24 24 H 1.48504 * 109.46907 * 330.21311 * 21 19 17 25 25 C 1.44576 * 122.71372 * 317.87109 * 16 15 14 26 26 C 1.47099 * 108.50808 * 297.68724 * 11 2 1 27 27 H 1.08998 * 109.47662 * 84.23504 * 1 2 3 28 28 H 1.08993 * 109.47445 * 204.24408 * 1 2 3 29 29 H 1.09005 * 109.47048 * 324.24014 * 1 2 3 30 30 H 1.08003 * 126.45348 * 0.24344 * 6 5 3 31 31 H 1.08004 * 126.06811 * 180.02562 * 7 6 5 32 32 H 1.07996 * 125.55964 * 179.97438 * 8 7 6 33 33 H 1.08998 * 109.49143 * 273.70562 * 13 11 2 34 34 H 1.09003 * 109.48712 * 33.76874 * 13 11 2 35 35 H 1.09004 * 109.44354 * 331.90940 * 14 13 11 36 36 H 1.09001 * 109.31619 * 212.14703 * 14 13 11 37 37 H 1.09001 * 108.95075 * 198.73549 * 15 14 13 38 38 H 1.09002 * 108.95046 * 80.10291 * 15 14 13 39 39 H 0.97002 * 120.00227 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.44645 * 330.68606 * 25 16 15 41 41 H 1.09000 * 109.42794 * 210.75482 * 25 16 15 42 42 H 1.08997 * 109.32872 * 304.31743 * 26 11 2 43 43 H 1.08997 * 109.32876 * 63.79455 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3556 1.1672 0.0248 5 6 1.4059 2.4373 -0.0299 6 6 1.9452 3.6938 0.1460 7 6 0.8947 4.6105 0.0390 8 6 -0.2429 3.9134 -0.1947 9 7 0.0539 2.5917 -0.2380 10 1 -0.5804 1.8742 -0.3915 11 6 2.1975 -1.2688 -0.0006 12 1 3.2654 -1.0505 0.0000 13 6 1.8574 -2.0239 -1.2819 14 6 3.0009 -2.9446 -1.6364 15 6 2.7665 -4.3356 -1.0198 16 7 2.2197 -4.2525 0.3487 17 6 1.2159 -5.1120 0.7078 18 1 0.4088 -5.3171 0.0201 19 6 1.2357 -5.7195 1.9558 20 7 0.1376 -6.2565 2.4437 21 14 2.8208 -5.7750 2.9425 22 1 2.9078 -4.5711 3.8075 23 1 2.8344 -6.9949 3.7892 24 1 3.9804 -5.8031 2.0152 25 6 2.7004 -3.3015 1.3258 26 6 1.8696 -1.9978 1.2343 27 1 -0.3634 0.1032 -1.0224 28 1 -0.3634 -0.9369 0.4219 29 1 -0.3633 0.8340 0.6006 30 1 2.9841 3.9266 0.3276 31 1 0.9760 5.6839 0.1271 32 1 -1.2261 4.3410 -0.3245 33 1 0.9501 -2.6085 -1.1296 34 1 1.7002 -1.3124 -2.0925 35 1 3.9328 -2.5308 -1.2511 36 1 3.0671 -3.0364 -2.7205 37 1 3.7139 -4.8739 -0.9902 38 1 2.0670 -4.8878 -1.6475 39 1 0.1513 -6.6807 3.3160 40 1 3.7491 -3.0782 1.1295 41 1 2.6006 -3.7261 2.3247 42 1 2.0917 -1.3673 2.0952 43 1 0.8082 -2.2455 1.2360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948180698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:02 Heat of formation + Delta-G solvation = 42.489654 kcal Electronic energy + Delta-G solvation = -24281.321386 eV Core-core repulsion = 20942.300666 eV Total energy + Delta-G solvation = -3339.020720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48042 -40.86934 -39.19461 -37.01623 -34.87694 -33.27037 -33.12303 -31.87983 -30.11140 -28.34705 -27.79265 -26.23607 -24.99640 -23.46405 -21.84693 -21.21843 -21.00078 -20.84623 -18.85221 -18.58750 -17.97227 -17.28508 -16.69637 -16.53941 -16.15207 -15.63775 -15.18560 -15.04421 -14.93695 -14.63038 -14.57782 -14.31683 -14.19795 -13.90156 -13.67791 -13.51817 -13.22284 -13.17175 -12.95095 -12.77315 -12.31459 -12.26031 -12.01258 -11.85148 -11.52549 -11.49457 -11.41745 -11.08224 -10.64189 -10.01024 -9.79037 -9.16594 -8.67895 -8.19115 -5.63733 0.46293 1.28434 1.39439 1.49490 1.81014 1.84313 2.26209 2.37997 2.40181 3.08316 3.33854 3.47030 3.78358 3.90645 4.00101 4.17829 4.27487 4.30039 4.31491 4.34627 4.42118 4.49995 4.52869 4.55766 4.67336 4.80507 4.85200 4.89961 4.99498 5.11125 5.12454 5.20871 5.24073 5.28016 5.34585 5.44608 5.49149 5.77819 5.95490 5.98757 6.19913 6.31185 6.53695 7.02573 7.05015 7.65307 8.04403 8.99561 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.004208 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.235017 B = 6652.574797 C = 6857.498719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.609 5.609 3 C 0.579 3.421 4 O -0.580 6.580 5 C -0.081 4.081 6 C -0.127 4.127 7 C -0.227 4.227 8 C 0.039 3.961 9 N -0.537 5.537 10 H 0.432 0.568 11 C 0.160 3.840 12 H 0.075 0.925 13 C -0.101 4.101 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.611 5.611 17 C -0.254 4.254 18 H 0.046 0.954 19 C -0.012 4.012 20 N -0.948 5.948 21 Si 0.939 3.061 22 H -0.275 1.275 23 H -0.309 1.309 24 H -0.265 1.265 25 C 0.143 3.857 26 C -0.136 4.136 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.215 0.785 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.022 0.978 38 H 0.054 0.946 39 H 0.262 0.738 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 19.844 -7.506 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.340 5.340 3 C 0.371 3.629 4 O -0.461 6.461 5 C -0.194 4.194 6 C -0.154 4.154 7 C -0.250 4.250 8 C -0.098 4.098 9 N -0.142 5.142 10 H 0.280 0.720 11 C 0.058 3.942 12 H 0.093 0.907 13 C -0.140 4.140 14 C -0.162 4.162 15 C 0.020 3.980 16 N -0.335 5.335 17 C -0.384 4.384 18 H 0.064 0.936 19 C -0.209 4.209 20 N -0.593 5.593 21 Si 0.769 3.231 22 H -0.203 1.203 23 H -0.238 1.238 24 H -0.189 1.189 25 C 0.016 3.984 26 C -0.177 4.177 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.152 0.848 31 H 0.180 0.820 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.778 19.539 -7.438 20.982 hybrid contribution 0.349 -0.887 0.933 1.334 sum -1.429 18.652 -6.506 19.806 Atomic orbital electron populations 1.22356 0.78827 1.04739 1.03139 1.48132 1.07834 1.05488 1.72555 1.17567 0.86515 0.83001 0.75838 1.90771 1.14572 1.87272 1.53456 1.20138 0.84894 0.94234 1.20093 1.21513 1.00163 0.90845 1.02897 1.21221 0.91771 1.00519 1.11482 1.22849 1.01749 0.82055 1.03187 1.43243 1.06948 1.09631 1.54332 0.72040 1.19957 0.96769 0.81921 0.95535 0.90704 1.21220 0.99774 0.97662 0.95333 1.21737 0.97862 0.95224 1.01422 1.21400 0.96554 0.95499 0.84522 1.43980 1.42178 1.37119 1.10222 1.18705 0.99746 1.19394 1.00597 0.93623 1.26064 0.98581 0.96892 0.99378 1.69925 1.28087 1.42320 1.18929 0.85984 0.82846 0.75607 0.78623 1.20268 1.23786 1.18934 1.21068 0.95762 0.88914 0.92620 1.21542 1.01984 0.97387 0.96762 0.89701 0.89772 0.89393 0.84775 0.81955 0.76844 0.91779 0.91240 0.92421 0.89131 0.96042 0.92743 0.92887 0.93000 0.94640 0.92848 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 8.20 127.77 1.05 2.08 16 2 N -0.61 -17.23 2.59 -838.54 -2.17 -19.40 16 3 C 0.58 18.29 7.64 86.45 0.66 18.95 16 4 O -0.58 -22.82 16.19 -4.33 -0.07 -22.89 16 5 C -0.08 -2.04 6.65 40.35 0.27 -1.77 16 6 C -0.13 -3.06 10.67 22.57 0.24 -2.82 16 7 C -0.23 -3.80 10.81 22.01 0.24 -3.56 16 8 C 0.04 0.48 11.89 83.48 0.99 1.47 16 9 N -0.54 -8.73 5.05 -183.62 -0.93 -9.66 16 10 H 0.43 4.97 4.92 -92.71 -0.46 4.51 16 11 C 0.16 5.25 1.96 43.01 0.08 5.34 16 12 H 0.07 2.74 6.02 -2.39 -0.01 2.73 16 13 C -0.10 -3.07 4.62 29.81 0.14 -2.93 16 14 C -0.12 -3.71 5.72 30.27 0.17 -3.54 16 15 C 0.14 5.41 6.24 86.49 0.54 5.95 16 16 N -0.61 -27.60 1.80 -698.36 -1.25 -28.85 16 17 C -0.25 -13.80 9.70 84.03 0.82 -12.99 16 18 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 19 C -0.01 -0.71 5.33 84.86 0.45 -0.26 16 20 N -0.95 -57.78 13.97 21.65 0.30 -57.48 16 21 Si 0.94 46.33 25.10 68.60 1.72 48.05 16 22 H -0.28 -13.05 6.53 99.48 0.65 -12.40 16 23 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 24 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 25 C 0.14 6.08 4.44 87.37 0.39 6.47 16 26 C -0.14 -5.06 4.91 29.39 0.14 -4.92 16 27 H 0.08 1.24 7.69 -2.39 -0.02 1.22 16 28 H 0.08 1.92 6.51 -2.39 -0.02 1.91 16 29 H 0.09 1.40 5.25 -2.38 -0.01 1.39 16 30 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.06 2.17 7.48 -2.39 -0.02 2.15 16 34 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 35 H 0.06 1.75 7.31 -2.38 -0.02 1.74 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 2.06 7.89 -2.39 -0.02 2.04 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.05 2.05 8.06 -2.38 -0.02 2.03 16 41 H 0.04 1.68 3.15 -2.39 -0.01 1.67 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.44 6.70 -2.39 -0.02 2.42 16 Total: -1.00 -72.49 328.22 4.30 -68.19 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.51 Total: 14.55 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.18 Total: 7.48 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -4.05 Total: -115.39 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.89 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.72 Total: 48.05 kcal Total: -72.49 4.30 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948180698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.681 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds