Wall clock time and date at job start Tue Mar 31 2020 07:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34784 * 119.99854 * 2 1 4 4 O 1.21629 * 119.99873 * 181.24487 * 3 2 1 5 5 C 1.47260 * 119.99963 * 1.25159 * 3 2 1 6 6 C 1.46688 * 126.94385 * 166.26247 * 5 3 2 7 7 C 1.34483 * 106.33596 * 180.02562 * 6 5 3 8 8 N 1.36451 * 108.85236 * 0.26057 * 7 6 5 9 9 H 0.97007 * 124.85034 * 179.71621 * 8 7 6 10 10 C 1.34652 * 110.30154 * 359.55604 * 8 7 6 11 11 C 1.46498 * 120.00245 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49297 * 180.02562 * 11 2 1 13 13 C 1.52570 * 109.48963 * 59.95587 * 11 2 1 14 14 C 1.47090 * 114.32347 * 155.02115 * 13 11 2 15 15 C 1.54862 * 110.32433 * 62.80767 * 14 13 11 16 16 N 1.44585 * 109.59602 * 288.72992 * 15 14 13 17 17 C 1.36938 * 118.64397 * 270.72109 * 16 15 14 18 18 H 1.08003 * 119.99452 * 29.76593 * 17 16 15 19 19 C 1.38811 * 120.00068 * 209.75952 * 17 16 15 20 20 N 1.31616 * 119.99863 * 10.51834 * 19 17 16 21 21 Si 1.86802 * 119.99577 * 190.51628 * 19 17 16 22 22 H 1.48500 * 109.47454 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46815 * 120.00387 * 21 19 17 24 24 H 1.48494 * 109.46863 * 239.99719 * 21 19 17 25 25 C 1.47605 * 122.71162 * 90.70798 * 16 15 14 26 26 C 1.50880 * 109.48890 * 300.04662 * 11 2 1 27 27 H 1.09004 * 109.46862 * 84.15602 * 1 2 3 28 28 H 1.09004 * 109.47401 * 204.15502 * 1 2 3 29 29 H 1.08997 * 109.47661 * 324.15619 * 1 2 3 30 30 H 1.07996 * 126.82987 * 0.02562 * 6 5 3 31 31 H 1.07997 * 125.57760 * 180.02562 * 7 6 5 32 32 H 1.07998 * 125.80611 * 180.19419 * 10 8 7 33 33 H 1.09003 * 108.50741 * 276.27511 * 13 11 2 34 34 H 1.09002 * 108.51040 * 33.92121 * 13 11 2 35 35 H 1.09005 * 109.32736 * 183.06021 * 14 13 11 36 36 H 1.08996 * 109.33426 * 302.53954 * 14 13 11 37 37 H 1.08995 * 109.45302 * 48.76482 * 15 14 13 38 38 H 1.09001 * 109.45502 * 168.71902 * 15 14 13 39 39 H 0.97002 * 119.99630 * 180.02562 * 20 19 17 40 40 H 1.08993 * 108.95119 * 78.57443 * 25 16 15 41 41 H 1.09001 * 108.94501 * 197.29572 * 25 16 15 42 42 H 1.08996 * 109.37035 * 332.04562 * 26 11 2 43 43 H 1.09007 * 109.36721 * 91.66030 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3549 1.1674 -0.0229 5 6 1.4028 2.4424 0.0279 6 6 1.9535 3.7723 0.3104 7 6 0.9239 4.6335 0.2275 8 7 -0.2097 3.9375 -0.0766 9 1 -1.0891 4.3316 -0.1876 10 6 0.0674 2.6260 -0.2040 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0699 0.0009 13 6 1.8284 -2.0701 -1.2441 14 6 2.8546 -3.0338 -1.6706 15 6 3.0736 -4.1063 -0.5752 16 7 3.7534 -3.5136 0.5549 17 6 5.1227 -3.5143 0.5715 18 1 5.6739 -3.4836 -0.3567 19 6 5.8021 -3.5544 1.7813 20 7 5.1469 -3.7993 2.8962 21 14 7.6463 -3.2607 1.8269 22 1 8.1416 -3.0085 0.4498 23 1 7.9388 -2.0818 2.6813 24 1 8.3244 -4.4576 2.3860 25 6 3.0323 -2.9074 1.6913 26 6 1.8325 -2.0602 1.2321 27 1 -0.3633 0.1046 -1.0224 28 1 -0.3634 -0.9377 0.4205 29 1 -0.3634 0.8330 0.6017 30 1 2.9812 4.0121 0.5395 31 1 0.9836 5.7009 0.3805 32 1 -0.6446 1.8502 -0.4441 33 1 0.9049 -2.6136 -1.0444 34 1 1.6487 -1.3739 -2.0633 35 1 2.5328 -3.5195 -2.5918 36 1 3.7913 -2.5068 -1.8519 37 1 2.1091 -4.4988 -0.2534 38 1 3.6797 -4.9180 -0.9778 39 1 5.6216 -3.8269 3.7417 40 1 2.6748 -3.7009 2.3474 41 1 3.7202 -2.2712 2.2481 42 1 1.5468 -1.3753 2.0305 43 1 0.9928 -2.7168 1.0041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948397162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:10 Heat of formation + Delta-G solvation = 31.843803 kcal Electronic energy + Delta-G solvation = -24277.531998 eV Core-core repulsion = 20938.049639 eV Total energy + Delta-G solvation = -3339.482359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15479 -40.71750 -38.98538 -36.73758 -34.89110 -33.05678 -32.57605 -31.62412 -30.10051 -28.04982 -27.65510 -25.85261 -25.08780 -23.32709 -21.60323 -21.24036 -20.63104 -20.48202 -18.74020 -18.56671 -17.55655 -16.93019 -16.76058 -16.35210 -15.92465 -15.56974 -15.04163 -14.89040 -14.85673 -14.66750 -14.25041 -14.07257 -13.85651 -13.80338 -13.61165 -13.21318 -13.00962 -12.97657 -12.79474 -12.42467 -12.29468 -12.04079 -12.03674 -11.79456 -11.47419 -11.37087 -11.31962 -10.79626 -10.46678 -9.82921 -9.46232 -9.26473 -8.59269 -7.86024 -5.35391 0.84512 1.39148 1.43286 1.52153 1.54983 2.09052 2.49353 2.52080 2.60346 3.28737 3.68074 3.79073 3.99176 4.09403 4.13946 4.28631 4.38386 4.42042 4.45079 4.50661 4.54968 4.68213 4.73006 4.81648 4.92781 4.96874 5.00855 5.06551 5.11901 5.15578 5.23857 5.26917 5.39370 5.57126 5.59729 5.66791 5.70873 5.77556 5.84997 5.97051 6.43196 6.61271 6.75768 7.19991 7.39662 7.97269 8.34467 9.18376 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.004671 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.564350 B = 5992.467183 C = 6779.733361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.606 5.606 3 C 0.567 3.433 4 O -0.612 6.612 5 C -0.269 4.269 6 C -0.196 4.196 7 C 0.004 3.996 8 N -0.533 5.533 9 H 0.440 0.560 10 C 0.057 3.943 11 C 0.156 3.844 12 H 0.051 0.949 13 C -0.099 4.099 14 C -0.134 4.134 15 C 0.153 3.847 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.057 0.943 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.957 3.043 22 H -0.271 1.271 23 H -0.297 1.297 24 H -0.282 1.282 25 C 0.195 3.805 26 C -0.129 4.129 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.206 0.794 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.025 0.975 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.248 0.752 40 H 0.005 0.995 41 H 0.024 0.976 42 H 0.059 0.941 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.900 14.016 -7.866 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.336 5.336 3 C 0.359 3.641 4 O -0.495 6.495 5 C -0.279 4.279 6 C -0.220 4.220 7 C -0.124 4.124 8 N -0.130 5.130 9 H 0.281 0.719 10 C -0.080 4.080 11 C 0.053 3.947 12 H 0.070 0.930 13 C -0.137 4.137 14 C -0.175 4.175 15 C 0.026 3.974 16 N -0.328 5.328 17 C -0.393 4.393 18 H 0.074 0.926 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.786 3.214 22 H -0.196 1.196 23 H -0.224 1.224 24 H -0.209 1.209 25 C 0.069 3.931 26 C -0.169 4.169 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.223 0.777 32 H 0.241 0.759 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.396 14.064 -7.734 25.953 hybrid contribution 1.661 0.132 0.538 1.751 sum -18.734 14.195 -7.196 24.582 Atomic orbital electron populations 1.22655 0.77588 1.05202 1.03459 1.47957 1.08408 1.04652 1.72610 1.18258 0.86328 0.84408 0.75085 1.90752 1.16751 1.88151 1.53836 1.20434 0.95392 0.92646 1.19465 1.22067 0.99526 0.91586 1.08801 1.22165 0.84651 0.98995 1.06610 1.41719 1.11304 1.06336 1.53627 0.71866 1.23299 0.95567 0.87461 1.01644 1.20268 0.96250 0.82492 0.95704 0.93026 1.20547 0.99729 0.97480 0.95949 1.21327 0.98081 0.98361 0.99719 1.20906 0.95771 0.93344 0.87356 1.43824 1.02137 1.66114 1.20688 1.19469 0.83845 1.43909 0.92053 0.92563 1.25764 1.01534 1.00709 0.96118 1.70169 1.35699 1.54214 0.97899 0.85355 0.81520 0.76943 0.77620 1.19572 1.22383 1.20858 1.20624 0.91052 0.93203 0.88227 1.22210 0.99224 0.98409 0.97050 0.89605 0.89541 0.88317 0.86097 0.77705 0.75883 0.89828 0.92337 0.89538 0.95579 0.92755 0.94402 0.94317 0.97658 0.95704 0.92254 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 8.10 127.77 1.03 1.94 16 2 N -0.61 -19.39 2.60 -831.35 -2.16 -21.55 16 3 C 0.57 21.97 7.67 86.61 0.66 22.63 16 4 O -0.61 -31.67 16.32 -4.12 -0.07 -31.74 16 5 C -0.27 -7.71 6.08 -19.04 -0.12 -7.83 16 6 C -0.20 -5.28 11.00 23.62 0.26 -5.02 16 7 C 0.00 0.07 11.89 83.11 0.99 1.06 16 8 N -0.53 -5.47 5.90 -194.56 -1.15 -6.62 16 9 H 0.44 0.45 8.96 -92.70 -0.83 -0.39 16 10 C 0.06 0.90 9.77 83.92 0.82 1.72 16 11 C 0.16 6.06 2.13 44.16 0.09 6.15 16 12 H 0.05 2.71 6.24 -2.39 -0.01 2.70 16 13 C -0.10 -3.14 4.30 28.61 0.12 -3.02 16 14 C -0.13 -4.84 5.74 29.39 0.17 -4.67 16 15 C 0.15 6.42 5.66 87.37 0.49 6.91 16 16 N -0.61 -31.92 2.27 -698.47 -1.58 -33.50 16 17 C -0.26 -15.59 9.42 84.03 0.79 -14.79 16 18 H 0.06 3.35 7.85 -2.91 -0.02 3.33 16 19 C -0.05 -2.78 4.98 84.86 0.42 -2.36 16 20 N -0.93 -58.52 10.93 21.65 0.24 -58.29 16 21 Si 0.96 49.36 29.57 68.60 2.03 51.39 16 22 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 24 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 25 C 0.19 10.03 4.63 86.47 0.40 10.43 16 26 C -0.13 -5.00 4.40 30.21 0.13 -4.87 16 27 H 0.09 0.99 7.59 -2.38 -0.02 0.97 16 28 H 0.09 1.35 7.20 -2.38 -0.02 1.34 16 29 H 0.10 1.30 4.96 -2.39 -0.01 1.29 16 30 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.23 1.72 4.62 -2.91 -0.01 1.71 16 33 H 0.08 2.13 7.36 -2.39 -0.02 2.11 16 34 H 0.06 1.72 8.04 -2.39 -0.02 1.71 16 35 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 2.03 8.07 -2.39 -0.02 2.01 16 38 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.27 16 40 H 0.01 0.29 8.00 -2.39 -0.02 0.28 16 41 H 0.02 1.50 6.43 -2.39 -0.02 1.48 16 42 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 43 H 0.08 2.62 7.20 -2.38 -0.02 2.60 16 Total: -1.00 -88.87 333.86 3.78 -85.10 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.19 Total: 6.93 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.28 Total: 8.28 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.65 Total: -119.96 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.07 Total: -31.74 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -88.87 3.78 -85.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948397162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.940 kcal (2) G-P(sol) polarization free energy of solvation -88.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds