Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46822 * 2 1 4 4 C 1.34780 * 119.99973 * 83.45526 * 3 2 1 5 5 O 1.21696 * 119.99740 * 177.22505 * 4 3 2 6 6 C 1.46674 * 119.99975 * 356.94899 * 4 3 2 7 7 C 1.37871 * 126.23240 * 352.10206 * 6 4 3 8 8 C 1.39836 * 107.08917 * 180.02562 * 7 6 4 9 9 C 1.35453 * 107.86317 * 359.97438 * 8 7 6 10 10 C 1.50696 * 125.56827 * 179.97438 * 9 8 7 11 11 N 1.35541 * 108.86909 * 359.73694 * 9 8 7 12 12 C 1.46499 * 125.67856 * 180.28505 * 11 9 8 13 13 C 1.46503 * 120.00197 * 263.44684 * 3 2 1 14 14 C 1.53948 * 113.74254 * 224.42645 * 13 3 2 15 15 N 1.47817 * 86.03276 * 222.08718 * 14 13 3 16 16 C 1.36936 * 134.45207 * 204.64728 * 15 14 13 17 17 H 1.07999 * 119.99797 * 179.86249 * 16 15 14 18 18 C 1.38808 * 120.00315 * 359.86536 * 16 15 14 19 19 N 1.31618 * 120.00033 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00410 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46793 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47338 * 119.99540 * 20 18 16 23 23 H 1.48500 * 109.47419 * 240.00111 * 20 18 16 24 24 C 1.47581 * 91.05345 * 24.54822 * 15 14 13 25 25 H 1.08994 * 109.47066 * 307.91815 * 1 2 3 26 26 H 1.08999 * 109.47250 * 67.92360 * 1 2 3 27 27 H 1.09006 * 109.46897 * 187.92443 * 1 2 3 28 28 H 1.09000 * 109.46821 * 240.00339 * 2 1 3 29 29 H 1.08994 * 109.47094 * 120.00185 * 2 1 3 30 30 H 1.08003 * 126.46122 * 359.96642 * 7 6 4 31 31 H 1.07995 * 126.07341 * 179.97438 * 8 7 6 32 32 H 1.08998 * 109.46980 * 89.97594 * 10 9 8 33 33 H 1.08990 * 109.47478 * 209.98006 * 10 9 8 34 34 H 1.09001 * 109.46983 * 329.98071 * 10 9 8 35 35 H 1.09002 * 109.46923 * 274.05673 * 12 11 9 36 36 H 1.09001 * 109.46831 * 34.05537 * 12 11 9 37 37 H 1.09004 * 109.47118 * 154.05363 * 12 11 9 38 38 H 1.08996 * 112.94259 * 356.01891 * 13 3 2 39 39 H 1.08995 * 113.77124 * 336.34751 * 14 13 3 40 40 H 1.08992 * 113.76624 * 107.75071 * 14 13 3 41 41 H 0.97008 * 120.00314 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.76917 * 221.14993 * 24 15 14 43 43 H 1.09005 * 113.76639 * 89.75496 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1174 2.0609 1.1596 5 8 2.5704 3.1904 1.1660 6 6 1.6738 1.4415 2.4130 7 6 1.0012 0.2444 2.5370 8 6 0.7768 0.0386 3.9018 9 6 1.3050 1.0899 4.5729 10 6 1.2857 1.2744 6.0684 11 7 1.8585 1.9465 3.6801 12 6 2.5369 3.2027 4.0087 13 6 2.3989 2.0236 -1.2604 14 6 3.7203 2.8096 -1.1812 15 7 3.0313 3.8477 -1.9767 16 6 3.4470 4.8401 -2.8236 17 1 2.7215 5.4851 -3.2969 18 6 4.8008 5.0172 -3.0739 19 7 5.6850 4.2308 -2.4976 20 14 5.3680 6.3715 -4.2287 21 1 4.1868 7.1099 -4.7435 22 1 6.2565 7.3080 -3.4948 23 1 6.1113 5.7729 -5.3665 24 6 1.7162 3.3835 -1.4938 25 1 -0.3633 0.6315 0.8107 26 1 -0.3634 0.3862 -0.9523 27 1 -0.3633 -1.0179 0.1417 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.7029 -0.4106 1.7317 31 1 0.2720 -0.8083 4.3426 32 1 2.1773 0.8215 6.5019 33 1 1.2679 2.3385 6.3031 34 1 0.3977 0.7962 6.4819 35 1 1.8011 4.0029 4.0883 36 1 3.0608 3.0950 4.9585 37 1 3.2536 3.4447 3.2238 38 1 2.3395 1.3502 -2.1154 39 1 3.9810 3.1301 -0.1726 40 1 4.5481 2.3310 -1.7042 41 1 6.6311 4.3542 -2.6727 42 1 0.9472 3.3623 -2.2660 43 1 1.3871 3.8730 -0.5771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949671022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = 109.277431 kcal Electronic energy + Delta-G solvation = -24235.630259 eV Core-core repulsion = 20899.505675 eV Total energy + Delta-G solvation = -3336.124584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53932 -39.53997 -36.66278 -35.86555 -32.67447 -32.15090 -31.48205 -30.26134 -27.71893 -26.39063 -26.32816 -24.60874 -23.35956 -23.17433 -21.31112 -20.41066 -19.20358 -18.42988 -16.88682 -16.52745 -15.84413 -15.61686 -15.23480 -14.73093 -14.55251 -14.38543 -13.95104 -13.63691 -13.26349 -13.10849 -13.06163 -12.77799 -12.49007 -12.39123 -12.20101 -11.96322 -11.90853 -11.58890 -11.42123 -11.24334 -11.17440 -10.97110 -10.80929 -10.51865 -10.05708 -9.87956 -9.40691 -9.23639 -8.62974 -8.55810 -8.07955 -7.86826 -6.69402 -5.64970 -2.95438 1.67794 2.73194 2.76881 3.44770 3.48544 3.52756 3.54412 3.68769 4.57155 4.68996 4.82836 4.87856 5.02110 5.06533 5.25173 5.28438 5.37068 5.39257 5.45585 5.46259 5.57595 5.61481 5.63651 5.75731 5.77951 5.79346 5.89493 5.92552 6.16786 6.20159 6.31934 6.42820 6.66030 6.70946 6.91498 7.04290 7.11533 7.29633 7.40132 7.67182 7.72921 7.88508 8.09529 8.65201 9.16420 9.82396 10.74421 11.52396 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.004238 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.175315 B = 6604.828250 C = 7387.892264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 N -0.587 5.587 4 C 0.578 3.422 5 O -0.523 6.523 6 C -0.039 4.039 7 C -0.175 4.175 8 C -0.211 4.211 9 C 0.030 3.970 10 C -0.085 4.085 11 N -0.407 5.407 12 C 0.065 3.935 13 C 0.092 3.908 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.215 4.215 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.113 3.887 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.174 0.826 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.251 0.749 42 H 0.037 0.963 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 -11.959 14.442 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.037 4.037 3 N -0.320 5.320 4 C 0.367 3.633 5 O -0.401 6.401 6 C -0.153 4.153 7 C -0.200 4.200 8 C -0.235 4.235 9 C -0.087 4.087 10 C -0.143 4.143 11 N -0.080 5.080 12 C -0.076 4.076 13 C -0.011 4.011 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.343 4.343 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.014 4.014 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.191 0.809 31 H 0.155 0.845 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.973 -10.792 14.297 20.502 hybrid contribution 0.303 0.782 -0.522 0.988 sum -9.669 -10.011 13.774 19.582 Atomic orbital electron populations 1.22478 0.96159 1.02169 1.03273 1.22143 0.94268 0.83549 1.03780 1.47744 1.64301 1.13317 1.06627 1.16973 0.78807 0.85282 0.82220 1.90850 1.44920 1.18191 1.86174 1.20261 1.11462 0.98164 0.85410 1.22602 1.02971 0.96655 0.97744 1.20634 1.09119 1.00127 0.93639 1.20516 1.02923 0.92961 0.92297 1.20337 1.03094 1.02422 0.88414 1.43777 1.41606 1.17719 1.04921 1.22250 0.98632 0.83441 1.03314 1.24120 1.00353 0.93310 0.83355 1.22808 0.91964 0.86359 0.96038 1.45688 1.00889 1.36921 1.49522 1.19038 0.91267 1.07172 1.16808 0.90328 1.24766 0.95564 0.99620 1.00653 1.69852 1.00500 1.39948 1.46452 0.86061 0.78419 0.81315 0.80079 1.20527 1.21851 1.21801 1.22890 0.90517 0.91296 0.96665 0.91128 0.92015 0.91489 0.90231 0.89026 0.80891 0.84487 0.91033 0.91811 0.90117 0.90749 0.90456 0.87420 0.87723 0.92325 0.91680 0.93878 0.94529 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.42 37.16 0.31 -1.56 16 2 C 0.09 1.03 5.66 -4.04 -0.02 1.01 16 3 N -0.59 -9.91 2.75 -169.44 -0.47 -10.37 16 4 C 0.58 10.72 6.97 -12.85 -0.09 10.63 16 5 O -0.52 -11.68 10.43 5.19 0.05 -11.63 16 6 C -0.04 -0.61 6.64 -81.98 -0.54 -1.16 16 7 C -0.17 -2.22 7.23 -39.12 -0.28 -2.50 16 8 C -0.21 -2.44 10.71 -39.98 -0.43 -2.87 16 9 C 0.03 0.35 6.87 -81.95 -0.56 -0.21 16 10 C -0.09 -0.67 9.88 36.00 0.36 -0.32 16 11 N -0.41 -5.76 3.16 -115.62 -0.37 -6.12 16 12 C 0.06 0.83 10.13 59.85 0.61 1.43 16 13 C 0.09 1.85 4.60 -70.15 -0.32 1.53 16 14 C 0.15 3.96 6.80 -2.83 -0.02 3.94 16 15 N -0.60 -16.72 3.70 -177.89 -0.66 -17.38 16 16 C -0.21 -6.40 10.70 -15.06 -0.16 -6.56 16 17 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.92 -28.63 11.39 55.49 0.63 -28.00 16 20 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 C 0.11 2.59 8.27 -2.97 -0.02 2.57 16 25 H 0.07 0.82 6.14 -51.93 -0.32 0.50 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 28 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 29 H 0.09 1.02 5.11 -51.93 -0.27 0.75 16 30 H 0.17 1.82 3.03 -52.48 -0.16 1.67 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 37 H 0.11 1.68 6.31 -51.93 -0.33 1.36 16 38 H 0.10 1.93 7.90 -51.93 -0.41 1.52 16 39 H 0.06 1.64 5.56 -51.93 -0.29 1.35 16 40 H 0.06 1.81 7.16 -51.93 -0.37 1.44 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.10 6.43 -51.93 -0.33 0.77 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -35.66 334.68 -8.26 -43.92 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.19 Total: 0.95 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.28 Total: 5.55 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.86 Total: -61.88 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.05 Total: -11.63 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.66 -8.26 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949671022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.193 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds