Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46822 * 2 1 4 4 C 1.34780 * 119.99973 * 83.45526 * 3 2 1 5 5 O 1.21696 * 119.99740 * 177.22505 * 4 3 2 6 6 C 1.46674 * 119.99975 * 356.94899 * 4 3 2 7 7 C 1.37871 * 126.23240 * 352.10206 * 6 4 3 8 8 C 1.39836 * 107.08917 * 180.02562 * 7 6 4 9 9 C 1.35453 * 107.86317 * 359.97438 * 8 7 6 10 10 C 1.50696 * 125.56827 * 179.97438 * 9 8 7 11 11 N 1.35541 * 108.86909 * 359.73694 * 9 8 7 12 12 C 1.46499 * 125.67856 * 180.28505 * 11 9 8 13 13 C 1.46503 * 120.00197 * 263.44684 * 3 2 1 14 14 C 1.53948 * 113.74254 * 224.42645 * 13 3 2 15 15 N 1.47817 * 86.03276 * 222.08718 * 14 13 3 16 16 C 1.36936 * 134.45207 * 204.64728 * 15 14 13 17 17 H 1.07999 * 119.99797 * 179.86249 * 16 15 14 18 18 C 1.38808 * 120.00315 * 359.86536 * 16 15 14 19 19 N 1.31618 * 120.00033 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00410 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46793 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47338 * 119.99540 * 20 18 16 23 23 H 1.48500 * 109.47419 * 240.00111 * 20 18 16 24 24 C 1.47581 * 91.05345 * 24.54822 * 15 14 13 25 25 H 1.08994 * 109.47066 * 307.91815 * 1 2 3 26 26 H 1.08999 * 109.47250 * 67.92360 * 1 2 3 27 27 H 1.09006 * 109.46897 * 187.92443 * 1 2 3 28 28 H 1.09000 * 109.46821 * 240.00339 * 2 1 3 29 29 H 1.08994 * 109.47094 * 120.00185 * 2 1 3 30 30 H 1.08003 * 126.46122 * 359.96642 * 7 6 4 31 31 H 1.07995 * 126.07341 * 179.97438 * 8 7 6 32 32 H 1.08998 * 109.46980 * 89.97594 * 10 9 8 33 33 H 1.08990 * 109.47478 * 209.98006 * 10 9 8 34 34 H 1.09001 * 109.46983 * 329.98071 * 10 9 8 35 35 H 1.09002 * 109.46923 * 274.05673 * 12 11 9 36 36 H 1.09001 * 109.46831 * 34.05537 * 12 11 9 37 37 H 1.09004 * 109.47118 * 154.05363 * 12 11 9 38 38 H 1.08996 * 112.94259 * 356.01891 * 13 3 2 39 39 H 1.08995 * 113.77124 * 336.34751 * 14 13 3 40 40 H 1.08992 * 113.76624 * 107.75071 * 14 13 3 41 41 H 0.97008 * 120.00314 * 179.97438 * 19 18 16 42 42 H 1.09003 * 113.76917 * 221.14993 * 24 15 14 43 43 H 1.09005 * 113.76639 * 89.75496 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1174 2.0609 1.1596 5 8 2.5704 3.1904 1.1660 6 6 1.6738 1.4415 2.4130 7 6 1.0012 0.2444 2.5370 8 6 0.7768 0.0386 3.9018 9 6 1.3050 1.0899 4.5729 10 6 1.2857 1.2744 6.0684 11 7 1.8585 1.9465 3.6801 12 6 2.5369 3.2027 4.0087 13 6 2.3989 2.0236 -1.2604 14 6 3.7203 2.8096 -1.1812 15 7 3.0313 3.8477 -1.9767 16 6 3.4470 4.8401 -2.8236 17 1 2.7215 5.4851 -3.2969 18 6 4.8008 5.0172 -3.0739 19 7 5.6850 4.2308 -2.4976 20 14 5.3680 6.3715 -4.2287 21 1 4.1868 7.1099 -4.7435 22 1 6.2565 7.3080 -3.4948 23 1 6.1113 5.7729 -5.3665 24 6 1.7162 3.3835 -1.4938 25 1 -0.3633 0.6315 0.8107 26 1 -0.3634 0.3862 -0.9523 27 1 -0.3633 -1.0179 0.1417 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.7029 -0.4106 1.7317 31 1 0.2720 -0.8083 4.3426 32 1 2.1773 0.8215 6.5019 33 1 1.2679 2.3385 6.3031 34 1 0.3977 0.7962 6.4819 35 1 1.8011 4.0029 4.0883 36 1 3.0608 3.0950 4.9585 37 1 3.2536 3.4447 3.2238 38 1 2.3395 1.3502 -2.1154 39 1 3.9810 3.1301 -0.1726 40 1 4.5481 2.3310 -1.7042 41 1 6.6311 4.3542 -2.6727 42 1 0.9472 3.3623 -2.2660 43 1 1.3871 3.8730 -0.5771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949671022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = 85.935105 kcal Electronic energy + Delta-G solvation = -24236.642459 eV Core-core repulsion = 20899.505675 eV Total energy + Delta-G solvation = -3337.136784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.60637 -40.99564 -38.41346 -37.13849 -34.32097 -33.58659 -32.48340 -31.46182 -29.49829 -27.69190 -27.32638 -26.58520 -25.03941 -24.31537 -22.39957 -22.00106 -20.37191 -19.72826 -18.76869 -18.01885 -17.16895 -16.79429 -16.71230 -16.57654 -15.90340 -15.62442 -15.55570 -14.97635 -14.40374 -14.23024 -14.03324 -13.96355 -13.90743 -13.60934 -13.40801 -13.20125 -13.05112 -12.97363 -12.84938 -12.77051 -12.70380 -12.48428 -12.10591 -12.04175 -11.94211 -11.68603 -11.49045 -11.01970 -10.48493 -9.64915 -9.49102 -8.91166 -8.88527 -7.91536 -5.25414 0.55896 1.41545 1.44515 1.54784 1.64237 1.83307 2.28658 2.42805 2.49487 3.26960 3.49280 3.62079 3.84777 3.93272 3.98760 4.11143 4.26350 4.29014 4.32814 4.43492 4.51258 4.58183 4.63530 4.68154 4.78247 4.81586 4.82847 4.89484 5.01674 5.02267 5.11720 5.23124 5.23861 5.30211 5.37470 5.48243 5.49429 5.87824 5.91082 5.99233 6.09541 6.37085 6.54661 6.89444 7.28787 7.58072 8.56225 9.25937 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.004238 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.175315 B = 6604.828250 C = 7387.892264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 N -0.587 5.587 4 C 0.570 3.430 5 O -0.577 6.577 6 C -0.088 4.088 7 C -0.152 4.152 8 C -0.219 4.219 9 C 0.037 3.963 10 C -0.085 4.085 11 N -0.422 5.422 12 C 0.068 3.932 13 C 0.128 3.872 14 C 0.152 3.848 15 N -0.632 5.632 16 C -0.236 4.236 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.984 3.016 21 H -0.264 1.264 22 H -0.295 1.295 23 H -0.285 1.285 24 C 0.116 3.884 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.195 0.805 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.248 0.752 42 H 0.058 0.942 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 -14.088 15.369 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.042 4.042 3 N -0.318 5.318 4 C 0.362 3.638 5 O -0.459 6.459 6 C -0.200 4.200 7 C -0.178 4.178 8 C -0.243 4.243 9 C -0.080 4.080 10 C -0.143 4.143 11 N -0.096 5.096 12 C -0.073 4.073 13 C 0.024 3.976 14 C 0.026 3.974 15 N -0.358 5.358 16 C -0.364 4.364 17 H 0.101 0.899 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.812 3.188 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.212 1.212 24 C -0.010 4.010 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.212 0.788 31 H 0.187 0.813 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -12.063 -12.976 15.227 23.361 hybrid contribution 0.881 1.387 -0.660 1.771 sum -11.182 -11.588 14.567 21.715 Atomic orbital electron populations 1.22418 0.94277 1.04137 1.02524 1.22508 0.95724 0.80602 1.05351 1.47727 1.64064 1.15068 1.04975 1.17538 0.77883 0.84792 0.83623 1.90820 1.47417 1.20640 1.87050 1.20039 1.15002 1.00095 0.84866 1.22931 1.00515 0.95144 0.99192 1.21081 1.09189 1.01021 0.92983 1.21323 1.00725 0.92021 0.93909 1.20509 1.04839 1.03320 0.85596 1.43988 1.42270 1.18279 1.05043 1.22172 0.98118 0.83679 1.03337 1.23467 0.95589 0.92871 0.85702 1.22598 0.93787 0.87312 0.93667 1.46101 1.03201 1.37013 1.49490 1.19480 0.91867 1.07898 1.17154 0.89918 1.25709 0.95585 1.02232 1.02653 1.70070 1.00455 1.41716 1.48097 0.84927 0.78049 0.78099 0.77723 1.18816 1.22174 1.21166 1.22919 0.89453 0.92473 0.96177 0.92535 0.92450 0.87718 0.88381 0.87773 0.78808 0.81267 0.89639 0.91276 0.87857 0.90623 0.87258 0.91233 0.85068 0.95383 0.94665 0.94333 0.92373 0.95434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.42 71.98 0.61 -2.43 16 2 C 0.08 1.72 5.66 86.38 0.49 2.21 16 3 N -0.59 -19.85 2.75 -808.22 -2.22 -22.07 16 4 C 0.57 22.01 6.97 86.45 0.60 22.61 16 5 O -0.58 -27.86 10.43 -4.33 -0.05 -27.91 16 6 C -0.09 -2.74 6.64 40.35 0.27 -2.47 16 7 C -0.15 -3.51 7.23 22.57 0.16 -3.35 16 8 C -0.22 -4.31 10.71 22.01 0.24 -4.07 16 9 C 0.04 0.79 6.87 41.34 0.28 1.07 16 10 C -0.09 -1.05 9.88 71.23 0.70 -0.35 16 11 N -0.42 -11.79 3.16 -519.70 -1.64 -13.43 16 12 C 0.07 1.81 10.13 127.77 1.29 3.10 16 13 C 0.13 5.24 4.60 46.75 0.21 5.46 16 14 C 0.15 8.30 6.80 86.44 0.59 8.89 16 15 N -0.63 -36.35 3.70 -716.72 -2.65 -39.00 16 16 C -0.24 -14.43 10.70 84.03 0.90 -13.53 16 17 H 0.08 4.83 7.83 -2.91 -0.02 4.81 16 18 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 19 N -0.95 -61.88 11.39 21.65 0.25 -61.63 16 20 Si 0.98 48.52 29.55 68.60 2.03 50.55 16 21 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 C 0.12 5.44 8.27 86.49 0.72 6.15 16 25 H 0.06 1.17 6.14 -2.39 -0.01 1.15 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.06 8.06 -2.38 -0.02 1.04 16 28 H 0.10 1.80 7.87 -2.39 -0.02 1.78 16 29 H 0.10 2.03 5.11 -2.39 -0.01 2.02 16 30 H 0.20 3.41 3.03 -2.91 -0.01 3.40 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.80 7.75 -2.39 -0.02 0.78 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.11 2.06 7.79 -2.39 -0.02 2.04 16 37 H 0.07 2.40 6.31 -2.38 -0.02 2.39 16 38 H 0.13 4.68 7.90 -2.39 -0.02 4.66 16 39 H 0.03 1.72 5.56 -2.39 -0.01 1.70 16 40 H 0.04 2.08 7.16 -2.39 -0.02 2.07 16 41 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.03 1.41 6.43 -2.38 -0.02 1.40 16 Total: -1.00 -83.39 334.68 4.25 -79.14 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.02 Total: 14.83 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 7.53 Total: 19.53 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -6.27 Total: -136.13 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -83.39 4.25 -79.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949671022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.073 kcal (2) G-P(sol) polarization free energy of solvation -83.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds