Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.34772 * 119.99873 * 82.30233 * 3 2 1 5 5 O 1.21698 * 120.00020 * 180.78378 * 4 3 2 6 6 C 1.46679 * 119.99962 * 0.77407 * 4 3 2 7 7 N 1.37646 * 126.23710 * 351.37090 * 6 4 3 8 8 H 0.97002 * 125.67474 * 0.02981 * 7 6 4 9 9 C 1.35531 * 108.64543 * 180.02562 * 7 6 4 10 10 C 1.50709 * 125.56168 * 179.97438 * 9 7 6 11 11 C 1.35451 * 108.87375 * 359.97438 * 9 7 6 12 12 C 1.37874 * 126.23006 * 171.72738 * 6 4 3 13 13 C 1.50703 * 126.46059 * 359.95106 * 12 6 4 14 14 C 1.46498 * 120.00335 * 262.29917 * 3 2 1 15 15 C 1.53948 * 113.74362 * 223.27354 * 14 3 2 16 16 N 1.47812 * 86.03396 * 222.08237 * 15 14 3 17 17 C 1.36939 * 134.45107 * 204.64396 * 16 15 14 18 18 H 1.08007 * 119.99601 * 179.86554 * 17 16 15 19 19 C 1.38810 * 120.00351 * 359.86350 * 17 16 15 20 20 N 1.31621 * 120.00031 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99962 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47039 * 60.00411 * 21 19 17 23 23 H 1.48505 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47274 * 300.00480 * 21 19 17 25 25 C 1.47576 * 91.05268 * 24.54439 * 16 15 14 26 26 H 1.08999 * 109.47511 * 299.99635 * 1 2 3 27 27 H 1.09001 * 109.47445 * 60.00175 * 1 2 3 28 28 H 1.08998 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47313 * 240.00543 * 2 1 3 30 30 H 1.08994 * 109.47545 * 120.00192 * 2 1 3 31 31 H 1.08997 * 109.46612 * 269.99851 * 10 9 7 32 32 H 1.09007 * 109.46998 * 29.99297 * 10 9 7 33 33 H 1.08994 * 109.46882 * 149.99735 * 10 9 7 34 34 H 1.07998 * 126.06402 * 180.02562 * 11 9 7 35 35 H 1.08994 * 109.47273 * 270.22233 * 13 12 6 36 36 H 1.08991 * 109.46831 * 30.22555 * 13 12 6 37 37 H 1.09010 * 109.46994 * 150.22057 * 13 12 6 38 38 H 1.09009 * 112.94254 * 354.86181 * 14 3 2 39 39 H 1.08999 * 113.76655 * 336.34411 * 15 14 3 40 40 H 1.08999 * 113.77228 * 107.74256 * 15 14 3 41 41 H 0.96994 * 119.99868 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.77248 * 221.14836 * 25 16 15 43 43 H 1.09007 * 113.76397 * 89.75802 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0955 2.0687 1.1567 5 8 2.4876 3.2207 1.1548 6 6 1.7067 1.4283 2.4177 7 7 1.0940 0.2032 2.5531 8 1 0.8445 -0.3880 1.8257 9 6 0.8975 -0.0396 3.8719 10 6 0.2540 -1.2740 4.4495 11 6 1.3739 1.0081 4.5861 12 6 1.8821 1.9470 3.6830 13 6 2.5084 3.2736 4.0282 14 6 2.4227 2.0153 -1.2572 15 6 3.7277 2.8251 -1.1513 16 7 3.0435 3.8414 -1.9782 17 6 3.4656 4.8309 -2.8256 18 1 2.7426 5.4575 -3.3266 19 6 4.8227 5.0285 -3.0405 20 7 5.7038 4.2645 -2.4302 21 14 5.3984 6.3779 -4.1969 22 1 4.9185 7.6929 -3.7010 23 1 6.8824 6.3821 -4.2527 24 1 4.8520 6.1318 -5.5556 25 6 1.7237 3.3601 -1.5262 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 -0.8212 -1.1168 4.5354 32 1 0.4457 -2.1240 3.7946 33 1 0.6720 -1.4738 5.4361 34 1 1.3591 1.1035 5.6617 35 1 3.5820 3.1442 4.1641 36 1 2.3273 3.9821 3.2200 37 1 2.0686 3.6541 4.9502 38 1 2.3986 1.3308 -2.1053 39 1 3.9548 3.1620 -0.1399 40 1 4.5779 2.3548 -1.6453 41 1 6.6520 4.4024 -2.5807 42 1 0.9769 3.3163 -2.3189 43 1 1.3608 3.8546 -0.6251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950635467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = 97.859061 kcal Electronic energy + Delta-G solvation = -24226.449019 eV Core-core repulsion = 20889.829296 eV Total energy + Delta-G solvation = -3336.619722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.65891 -39.50046 -36.71679 -35.85764 -32.59609 -32.19999 -31.31464 -30.36346 -27.77941 -27.42209 -26.00435 -24.62633 -23.49004 -23.36455 -20.96788 -20.46347 -19.30415 -18.76331 -17.04239 -16.58837 -15.86982 -15.55066 -15.23250 -14.70252 -14.36759 -14.15019 -13.77194 -13.60726 -13.26250 -13.15936 -12.87030 -12.78087 -12.65686 -12.44728 -12.41285 -12.20292 -11.91832 -11.69860 -11.50180 -11.33341 -11.21769 -11.18910 -10.77474 -10.60432 -10.08514 -9.93018 -9.41020 -9.25890 -8.65787 -8.55705 -8.18066 -7.83793 -6.69980 -5.64353 -2.95146 1.64121 2.74816 3.07498 3.31293 3.47043 3.51225 3.52542 3.67301 4.55236 4.59413 4.70819 4.76144 4.89015 4.96183 5.10702 5.28158 5.28647 5.36676 5.41296 5.49568 5.51356 5.61929 5.63667 5.71660 5.83340 5.87692 5.95634 6.02981 6.10265 6.31426 6.38775 6.56043 6.62178 6.67158 6.89325 7.01146 7.09571 7.38637 7.43164 7.64969 7.69263 7.82969 8.09598 8.61758 9.16570 9.82727 10.74143 11.52885 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.004153 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.822448 B = 6740.722448 C = 7393.814556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.086 3.914 3 N -0.603 5.603 4 C 0.581 3.419 5 O -0.496 6.496 6 C -0.048 4.048 7 N -0.547 5.547 8 H 0.422 0.578 9 C 0.032 3.968 10 C -0.086 4.086 11 C -0.208 4.208 12 C -0.077 4.077 13 C -0.092 4.092 14 C 0.089 3.911 15 C 0.155 3.845 16 N -0.603 5.603 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.113 3.887 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.253 0.747 42 H 0.036 0.964 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 -14.986 12.265 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.039 4.039 3 N -0.336 5.336 4 C 0.369 3.631 5 O -0.370 6.370 6 C -0.160 4.160 7 N -0.155 5.155 8 H 0.270 0.730 9 C -0.085 4.085 10 C -0.144 4.144 11 C -0.233 4.233 12 C -0.086 4.086 13 C -0.149 4.149 14 C -0.014 4.014 15 C 0.029 3.971 16 N -0.329 5.329 17 C -0.346 4.346 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.014 4.014 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.509 -14.241 11.873 21.823 hybrid contribution 0.152 0.307 -0.863 0.929 sum -11.357 -13.934 11.009 21.080 Atomic orbital electron populations 1.22563 0.96150 1.02478 1.04101 1.21880 0.94105 0.84660 1.03229 1.48048 1.64954 1.12680 1.07964 1.17070 0.78629 0.85867 0.81493 1.90887 1.44952 1.15853 1.85303 1.20426 1.11257 0.88955 0.95410 1.43430 1.47349 1.16986 1.07746 0.72960 1.20524 1.05243 0.99009 0.83736 1.20362 1.00271 0.92547 1.01225 1.20538 1.08756 0.94971 0.98996 1.19928 1.01043 0.97223 0.90363 1.20365 0.99534 0.93059 1.01987 1.24142 1.00323 0.93511 0.83383 1.22787 0.92047 0.86426 0.95826 1.45658 1.00483 1.37996 1.48768 1.18941 0.91045 1.08042 1.16536 0.90411 1.24769 0.95562 0.99665 1.00488 1.69824 1.00551 1.40608 1.45723 0.86207 0.77509 0.81668 0.80408 1.21234 1.21611 1.21206 1.22904 0.90523 0.91199 0.96781 0.91896 0.90514 0.91212 0.89026 0.91019 0.90901 0.91837 0.89976 0.84466 0.91683 0.89662 0.92357 0.87917 0.92292 0.91628 0.93734 0.94636 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 8.85 37.16 0.33 -1.43 16 2 C 0.09 0.95 5.69 -4.04 -0.02 0.93 16 3 N -0.60 -9.89 2.75 -169.45 -0.47 -10.36 16 4 C 0.58 10.74 7.00 -12.86 -0.09 10.65 16 5 O -0.50 -11.21 10.49 5.19 0.05 -11.16 16 6 C -0.05 -0.75 6.45 -81.98 -0.53 -1.28 16 7 N -0.55 -6.39 4.14 -5.69 -0.02 -6.41 16 8 H 0.42 3.94 3.48 -40.82 -0.14 3.80 16 9 C 0.03 0.34 7.13 -81.95 -0.58 -0.24 16 10 C -0.09 -0.56 10.41 36.01 0.38 -0.18 16 11 C -0.21 -2.56 10.66 -39.98 -0.43 -2.99 16 12 C -0.08 -1.17 6.21 -104.16 -0.65 -1.82 16 13 C -0.09 -1.38 9.92 36.01 0.36 -1.02 16 14 C 0.09 1.78 4.60 -70.15 -0.32 1.45 16 15 C 0.15 3.97 6.79 -2.84 -0.02 3.95 16 16 N -0.60 -16.64 3.70 -177.90 -0.66 -17.30 16 17 C -0.22 -6.48 10.70 -15.06 -0.16 -6.64 16 18 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -28.61 11.39 55.49 0.63 -27.98 16 21 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.11 2.56 8.27 -2.97 -0.02 2.54 16 26 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.89 7.84 -51.92 -0.41 0.48 16 30 H 0.07 0.72 5.16 -51.93 -0.27 0.45 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.49 6.36 -51.93 -0.33 1.16 16 37 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.10 1.85 7.89 -51.92 -0.41 1.44 16 39 H 0.06 1.65 5.59 -51.93 -0.29 1.36 16 40 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 41 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 1.15 6.41 -51.92 -0.33 0.82 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -35.63 337.10 -8.50 -44.13 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.23 Total: 2.38 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.86 Total: 3.57 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.52 Total: -62.05 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.05 Total: -11.16 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.63 -8.50 -44.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950635467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.984 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds