Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.34772 * 119.99873 * 82.30233 * 3 2 1 5 5 O 1.21698 * 120.00020 * 180.78378 * 4 3 2 6 6 C 1.46679 * 119.99962 * 0.77407 * 4 3 2 7 7 N 1.37646 * 126.23710 * 351.37090 * 6 4 3 8 8 H 0.97002 * 125.67474 * 0.02981 * 7 6 4 9 9 C 1.35531 * 108.64543 * 180.02562 * 7 6 4 10 10 C 1.50709 * 125.56168 * 179.97438 * 9 7 6 11 11 C 1.35451 * 108.87375 * 359.97438 * 9 7 6 12 12 C 1.37874 * 126.23006 * 171.72738 * 6 4 3 13 13 C 1.50703 * 126.46059 * 359.95106 * 12 6 4 14 14 C 1.46498 * 120.00335 * 262.29917 * 3 2 1 15 15 C 1.53948 * 113.74362 * 223.27354 * 14 3 2 16 16 N 1.47812 * 86.03396 * 222.08237 * 15 14 3 17 17 C 1.36939 * 134.45107 * 204.64396 * 16 15 14 18 18 H 1.08007 * 119.99601 * 179.86554 * 17 16 15 19 19 C 1.38810 * 120.00351 * 359.86350 * 17 16 15 20 20 N 1.31621 * 120.00031 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99962 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47039 * 60.00411 * 21 19 17 23 23 H 1.48505 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47274 * 300.00480 * 21 19 17 25 25 C 1.47576 * 91.05268 * 24.54439 * 16 15 14 26 26 H 1.08999 * 109.47511 * 299.99635 * 1 2 3 27 27 H 1.09001 * 109.47445 * 60.00175 * 1 2 3 28 28 H 1.08998 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47313 * 240.00543 * 2 1 3 30 30 H 1.08994 * 109.47545 * 120.00192 * 2 1 3 31 31 H 1.08997 * 109.46612 * 269.99851 * 10 9 7 32 32 H 1.09007 * 109.46998 * 29.99297 * 10 9 7 33 33 H 1.08994 * 109.46882 * 149.99735 * 10 9 7 34 34 H 1.07998 * 126.06402 * 180.02562 * 11 9 7 35 35 H 1.08994 * 109.47273 * 270.22233 * 13 12 6 36 36 H 1.08991 * 109.46831 * 30.22555 * 13 12 6 37 37 H 1.09010 * 109.46994 * 150.22057 * 13 12 6 38 38 H 1.09009 * 112.94254 * 354.86181 * 14 3 2 39 39 H 1.08999 * 113.76655 * 336.34411 * 15 14 3 40 40 H 1.08999 * 113.77228 * 107.74256 * 15 14 3 41 41 H 0.96994 * 119.99868 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.77248 * 221.14836 * 25 16 15 43 43 H 1.09007 * 113.76397 * 89.75802 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0955 2.0687 1.1567 5 8 2.4876 3.2207 1.1548 6 6 1.7067 1.4283 2.4177 7 7 1.0940 0.2032 2.5531 8 1 0.8445 -0.3880 1.8257 9 6 0.8975 -0.0396 3.8719 10 6 0.2540 -1.2740 4.4495 11 6 1.3739 1.0081 4.5861 12 6 1.8821 1.9470 3.6830 13 6 2.5084 3.2736 4.0282 14 6 2.4227 2.0153 -1.2572 15 6 3.7277 2.8251 -1.1513 16 7 3.0435 3.8414 -1.9782 17 6 3.4656 4.8309 -2.8256 18 1 2.7426 5.4575 -3.3266 19 6 4.8227 5.0285 -3.0405 20 7 5.7038 4.2645 -2.4302 21 14 5.3984 6.3779 -4.1969 22 1 4.9185 7.6929 -3.7010 23 1 6.8824 6.3821 -4.2527 24 1 4.8520 6.1318 -5.5556 25 6 1.7237 3.3601 -1.5262 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 -0.8212 -1.1168 4.5354 32 1 0.4457 -2.1240 3.7946 33 1 0.6720 -1.4738 5.4361 34 1 1.3591 1.1035 5.6617 35 1 3.5820 3.1442 4.1641 36 1 2.3273 3.9821 3.2200 37 1 2.0686 3.6541 4.9502 38 1 2.3986 1.3308 -2.1053 39 1 3.9548 3.1620 -0.1399 40 1 4.5779 2.3548 -1.6453 41 1 6.6520 4.4024 -2.5807 42 1 0.9769 3.3163 -2.3189 43 1 1.3608 3.8546 -0.6251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950635467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = 74.327971 kcal Electronic energy + Delta-G solvation = -24227.469403 eV Core-core repulsion = 20889.829296 eV Total energy + Delta-G solvation = -3337.640107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.73270 -40.96015 -38.44444 -37.11872 -34.26584 -33.63491 -32.36432 -31.47033 -29.49144 -28.55652 -27.30518 -26.59050 -25.10177 -24.46588 -22.44124 -21.44924 -20.83628 -19.91432 -18.77762 -18.17259 -17.18001 -17.08115 -16.62527 -16.45172 -15.71576 -15.43594 -15.26930 -14.66626 -14.39021 -14.34976 -14.15039 -13.89235 -13.74443 -13.68009 -13.46325 -13.37278 -13.15953 -13.02690 -12.92128 -12.87156 -12.71351 -12.56756 -12.32816 -12.20557 -11.98260 -11.84573 -11.49522 -11.01828 -10.51283 -9.71858 -9.57895 -8.90818 -8.88260 -7.90717 -5.24743 0.49817 1.41955 1.47703 1.53572 1.77387 1.85728 2.26521 2.38791 2.49018 3.27209 3.48740 3.59275 3.75502 3.83082 4.00537 4.12084 4.20736 4.24652 4.30411 4.39662 4.53781 4.67533 4.69524 4.73524 4.83361 4.84322 4.85856 4.88713 4.96805 5.00468 5.14756 5.21194 5.22694 5.23665 5.28003 5.47132 5.52414 5.84350 5.88157 5.90972 6.00882 6.45965 6.59916 6.89684 7.24349 7.58803 8.56530 9.26362 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.004153 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.822448 B = 6740.722448 C = 7393.814556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.078 3.922 3 N -0.601 5.601 4 C 0.573 3.427 5 O -0.553 6.553 6 C -0.081 4.081 7 N -0.534 5.534 8 H 0.433 0.567 9 C 0.059 3.941 10 C -0.087 4.087 11 C -0.225 4.225 12 C -0.095 4.095 13 C -0.089 4.089 14 C 0.128 3.872 15 C 0.152 3.848 16 N -0.631 5.631 17 C -0.239 4.239 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.954 5.954 21 Si 0.985 3.015 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.115 3.885 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.027 0.973 40 H 0.036 0.964 41 H 0.248 0.752 42 H 0.058 0.942 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.189 -17.904 12.701 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.045 4.045 3 N -0.334 5.334 4 C 0.364 3.636 5 O -0.432 6.432 6 C -0.193 4.193 7 N -0.142 5.142 8 H 0.284 0.716 9 C -0.059 4.059 10 C -0.144 4.144 11 C -0.249 4.249 12 C -0.104 4.104 13 C -0.147 4.147 14 C 0.023 3.977 15 C 0.026 3.974 16 N -0.357 5.357 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.812 3.188 22 H -0.208 1.208 23 H -0.218 1.218 24 H -0.194 1.194 25 C -0.011 4.011 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.177 0.823 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.807 -17.227 12.301 25.273 hybrid contribution 0.778 1.148 -0.855 1.629 sum -13.029 -16.079 11.446 23.650 Atomic orbital electron populations 1.22512 0.94019 1.04913 1.03090 1.22280 0.95767 0.81383 1.05027 1.48003 1.64560 1.14696 1.06093 1.17579 0.77714 0.85410 0.82860 1.90858 1.47601 1.18454 1.86273 1.19953 1.14315 0.91063 0.93984 1.43358 1.46458 1.15654 1.08780 0.71618 1.21276 1.02261 0.99546 0.82838 1.20577 1.00918 0.90744 1.02136 1.20830 1.09240 0.94823 0.99965 1.20199 1.01271 0.97548 0.91347 1.20285 0.99530 0.93084 1.01758 1.23466 0.95447 0.93084 0.85685 1.22573 0.93880 0.87537 0.93407 1.46078 1.02871 1.38086 1.48706 1.19411 0.91673 1.08780 1.16875 0.89908 1.25718 0.95610 1.02269 1.02517 1.70051 1.00414 1.42355 1.47427 0.85066 0.76580 0.78409 0.78722 1.20766 1.21780 1.19421 1.22940 0.89404 0.92371 0.96417 0.93121 0.91373 0.86932 0.86863 0.89636 0.89108 0.89770 0.88375 0.82284 0.92296 0.93161 0.89902 0.84991 0.95561 0.94549 0.94307 0.92351 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 8.85 71.98 0.64 -2.10 16 2 C 0.08 1.51 5.69 86.38 0.49 2.01 16 3 N -0.60 -19.68 2.75 -808.22 -2.23 -21.90 16 4 C 0.57 22.11 7.00 86.45 0.61 22.72 16 5 O -0.55 -27.17 10.49 -4.34 -0.05 -27.21 16 6 C -0.08 -2.53 6.45 40.35 0.26 -2.27 16 7 N -0.53 -11.12 4.14 -171.93 -0.71 -11.83 16 8 H 0.43 6.56 3.48 -92.71 -0.32 6.24 16 9 C 0.06 1.06 7.13 41.35 0.29 1.36 16 10 C -0.09 -0.66 10.41 71.24 0.74 0.08 16 11 C -0.23 -5.06 10.66 22.01 0.23 -4.83 16 12 C -0.09 -2.89 6.21 -19.56 -0.12 -3.01 16 13 C -0.09 -2.85 9.92 71.24 0.71 -2.14 16 14 C 0.13 5.11 4.60 46.75 0.21 5.33 16 15 C 0.15 8.25 6.79 86.44 0.59 8.84 16 16 N -0.63 -36.21 3.70 -716.74 -2.65 -38.87 16 17 C -0.24 -14.64 10.70 84.03 0.90 -13.74 16 18 H 0.08 4.81 7.83 -2.91 -0.02 4.79 16 19 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 20 N -0.95 -61.88 11.39 21.65 0.25 -61.63 16 21 Si 0.99 48.55 29.55 68.60 2.03 50.58 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.11 5.33 8.27 86.48 0.72 6.05 16 26 H 0.05 0.89 6.35 -2.39 -0.02 0.87 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 1.77 7.84 -2.38 -0.02 1.75 16 30 H 0.09 1.46 5.16 -2.39 -0.01 1.45 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.94 6.36 -2.39 -0.02 1.93 16 37 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.13 4.54 7.89 -2.38 -0.02 4.52 16 39 H 0.03 1.61 5.59 -2.39 -0.01 1.60 16 40 H 0.04 2.14 7.16 -2.39 -0.02 2.12 16 41 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.03 1.49 6.41 -2.38 -0.02 1.48 16 Total: -1.00 -84.72 337.10 4.07 -80.65 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.70 Total: 15.65 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.73 Total: 14.57 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -5.35 Total: -134.23 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -84.72 4.07 -80.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950635467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.975 kcal (2) G-P(sol) polarization free energy of solvation -84.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds