Wall clock time and date at job start Tue Mar 31 2020 06:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47024 * 2 1 4 4 C 1.34783 * 119.99852 * 82.84208 * 3 2 1 5 5 O 1.21623 * 119.99460 * 181.56867 * 4 3 2 6 6 C 1.47255 * 119.99880 * 1.55900 * 4 3 2 7 7 C 1.46693 * 126.94491 * 350.71952 * 6 4 3 8 8 C 1.34485 * 106.33251 * 179.97438 * 7 6 4 9 9 C 1.50702 * 125.57010 * 179.97438 * 8 7 6 10 10 N 1.36448 * 108.85952 * 359.97438 * 8 7 6 11 11 H 0.96998 * 124.85412 * 180.02562 * 10 8 7 12 12 C 1.34662 * 110.29290 * 359.72981 * 10 8 7 13 13 C 1.50700 * 125.79856 * 180.28675 * 12 10 8 14 14 C 1.46501 * 120.00365 * 262.83903 * 3 2 1 15 15 C 1.53943 * 113.74289 * 223.12750 * 14 3 2 16 16 N 1.47815 * 86.03516 * 222.08074 * 15 14 3 17 17 C 1.36937 * 134.45213 * 204.63876 * 16 15 14 18 18 H 1.07998 * 119.99411 * 179.86739 * 17 16 15 19 19 C 1.38808 * 120.00465 * 359.87532 * 17 16 15 20 20 N 1.31619 * 120.00031 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99900 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47345 * 89.99785 * 21 19 17 23 23 H 1.48502 * 109.47354 * 209.99418 * 21 19 17 24 24 H 1.48498 * 109.47356 * 329.99754 * 21 19 17 25 25 C 1.47583 * 91.04859 * 24.54836 * 16 15 14 26 26 H 1.09002 * 109.46664 * 60.00118 * 1 2 3 27 27 H 1.09005 * 109.46593 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47095 * 299.99806 * 1 2 3 29 29 H 1.09003 * 109.47515 * 240.00493 * 2 1 3 30 30 H 1.08998 * 109.47352 * 120.00075 * 2 1 3 31 31 H 1.08000 * 126.83237 * 0.02562 * 7 6 4 32 32 H 1.08993 * 109.47292 * 90.00369 * 9 8 7 33 33 H 1.08997 * 109.46992 * 210.00337 * 9 8 7 34 34 H 1.09005 * 109.46775 * 329.99810 * 9 8 7 35 35 H 1.09010 * 109.46799 * 270.18552 * 13 12 10 36 36 H 1.08994 * 109.47474 * 30.18266 * 13 12 10 37 37 H 1.09001 * 109.47609 * 150.19136 * 13 12 10 38 38 H 1.09005 * 112.94148 * 354.71744 * 14 3 2 39 39 H 1.09006 * 113.77129 * 336.34733 * 15 14 3 40 40 H 1.09005 * 113.77302 * 107.73994 * 15 14 3 41 41 H 0.96997 * 119.99984 * 180.02562 * 20 19 17 42 42 H 1.09000 * 113.76320 * 221.14841 * 25 16 15 43 43 H 1.09004 * 113.76811 * 89.75632 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1058 2.0651 1.1582 5 8 2.4841 3.2210 1.1547 6 6 1.7432 1.4127 2.4276 7 6 1.0962 0.1067 2.5944 8 6 0.9603 -0.0815 3.9191 9 6 0.3442 -1.2909 4.5740 10 7 1.4714 1.0014 4.5732 11 1 1.4926 1.1077 5.5371 12 6 1.9482 1.8987 3.6894 13 6 2.5939 3.2164 4.0325 14 6 2.4116 2.0192 -1.2588 15 6 3.7155 2.8316 -1.1610 16 7 3.0228 3.8485 -1.9802 17 6 3.4362 4.8410 -2.8282 18 1 2.7080 5.4672 -3.3221 19 6 4.7911 5.0421 -3.0533 20 7 5.6785 4.2791 -2.4511 21 14 5.3548 6.3955 -4.2107 22 1 5.5489 7.6529 -3.4447 23 1 6.6372 6.0006 -4.8469 24 1 4.3265 6.6092 -5.2605 25 6 1.7075 3.3632 -1.5189 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.7907 -0.5694 1.8096 32 1 1.1174 -2.0357 4.7621 33 1 -0.1156 -0.9982 5.5179 34 1 -0.4149 -1.7134 3.9156 35 1 1.8298 3.9919 4.0879 36 1 3.0985 3.1341 4.9951 37 1 3.3203 3.4766 3.2625 38 1 2.3823 1.3368 -2.1083 39 1 3.9498 3.1665 -0.1505 40 1 4.5630 2.3644 -1.6628 41 1 6.6253 4.4198 -2.6081 42 1 0.9547 3.3198 -2.3060 43 1 1.3506 3.8547 -0.6138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952372416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:06 Heat of formation + Delta-G solvation = 92.954955 kcal Electronic energy + Delta-G solvation = -24141.975913 eV Core-core repulsion = 20805.143533 eV Total energy + Delta-G solvation = -3336.832380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39676 -39.42618 -36.53730 -35.46676 -32.59970 -32.09601 -30.80955 -29.92133 -29.18055 -27.22668 -24.90840 -24.47590 -23.52656 -23.04874 -21.29370 -20.68458 -19.34672 -17.69608 -16.68518 -16.54686 -15.91949 -15.36328 -15.13066 -14.66924 -14.38179 -14.23250 -13.72472 -13.53806 -13.32561 -13.22685 -12.85010 -12.59128 -12.42258 -12.23931 -12.10473 -12.04195 -11.83531 -11.42427 -11.35949 -11.24485 -11.06632 -10.89899 -10.74186 -10.44067 -9.92358 -9.82037 -9.30349 -9.03985 -8.64929 -8.43671 -8.01559 -7.73447 -6.59845 -5.57053 -2.86895 1.99341 2.41478 3.10639 3.50417 3.53888 3.56835 3.65248 3.97905 4.64443 4.71348 4.90392 5.02512 5.11537 5.23690 5.29076 5.30849 5.39305 5.48962 5.56880 5.58324 5.66806 5.70768 5.74542 5.86073 5.87113 5.91338 6.00271 6.04986 6.13624 6.32616 6.42275 6.55932 6.79059 6.86107 6.90442 7.04332 7.20657 7.46708 7.49733 7.76454 7.88160 8.13513 8.18228 8.96872 9.24488 9.90385 10.84195 11.60375 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.004118 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.111404 B = 6797.882265 C = 7459.816348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 N -0.596 5.596 4 C 0.582 3.418 5 O -0.523 6.523 6 C -0.221 4.221 7 C -0.185 4.185 8 C -0.002 4.002 9 C -0.082 4.082 10 N -0.553 5.553 11 H 0.410 0.590 12 C 0.100 3.900 13 C -0.092 4.092 14 C 0.091 3.909 15 C 0.156 3.844 16 N -0.605 5.605 17 C -0.213 4.213 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.113 3.887 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.251 0.749 42 H 0.033 0.967 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 -14.234 15.384 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.034 4.034 3 N -0.329 5.329 4 C 0.371 3.629 5 O -0.401 6.401 6 C -0.230 4.230 7 C -0.209 4.209 8 C -0.110 4.110 9 C -0.139 4.139 10 N -0.150 5.150 11 H 0.246 0.754 12 C -0.017 4.017 13 C -0.149 4.149 14 C -0.012 4.012 15 C 0.030 3.970 16 N -0.331 5.331 17 C -0.341 4.341 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.014 4.014 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.186 0.814 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.902 -13.435 15.286 23.087 hybrid contribution 0.268 0.733 -0.124 0.790 sum -10.635 -12.702 15.162 22.458 Atomic orbital electron populations 1.22424 0.96565 1.01587 1.03191 1.22060 0.94001 0.84023 1.03353 1.47823 1.64766 1.13183 1.07133 1.17307 0.77652 0.85503 0.82397 1.90811 1.46312 1.16485 1.86492 1.20318 1.12595 0.97758 0.92357 1.22870 1.05847 0.97439 0.94725 1.20288 1.06693 0.91502 0.92563 1.20287 1.00198 0.93283 1.00159 1.41515 1.48761 1.15990 1.08701 0.75423 1.20298 0.99831 0.93062 0.88512 1.20531 1.01087 0.90805 1.02478 1.23989 1.00027 0.93311 0.83897 1.22765 0.92165 0.86390 0.95704 1.45692 1.00754 1.37749 1.48929 1.18992 0.91092 1.07668 1.16353 0.90471 1.24753 0.95583 0.99707 1.00655 1.69846 1.00255 1.40605 1.46104 0.86145 0.77905 0.81614 0.80274 1.21789 1.21789 1.20754 1.22911 0.90366 0.91517 0.96618 0.92178 0.92074 0.91397 0.90869 0.89071 0.81425 0.91214 0.92072 0.90170 0.90526 0.92300 0.87955 0.88242 0.92389 0.91881 0.93913 0.94884 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.64 37.16 0.32 -1.62 16 2 C 0.09 1.13 5.65 -4.04 -0.02 1.11 16 3 N -0.60 -10.50 2.75 -169.23 -0.47 -10.96 16 4 C 0.58 11.09 7.02 -12.59 -0.09 11.00 16 5 O -0.52 -12.03 10.67 5.26 0.06 -11.97 16 6 C -0.22 -3.41 5.98 -103.35 -0.62 -4.03 16 7 C -0.19 -2.21 7.27 -37.50 -0.27 -2.49 16 8 C 0.00 -0.02 7.13 -81.86 -0.58 -0.60 16 9 C -0.08 -0.50 10.41 36.01 0.37 -0.13 16 10 N -0.55 -5.54 5.90 -5.42 -0.03 -5.57 16 11 H 0.41 2.74 8.96 -40.82 -0.37 2.38 16 12 C 0.10 1.34 7.17 -81.88 -0.59 0.76 16 13 C -0.09 -1.17 9.79 36.01 0.35 -0.82 16 14 C 0.09 1.92 4.60 -70.15 -0.32 1.60 16 15 C 0.16 4.11 6.79 -2.84 -0.02 4.09 16 16 N -0.61 -17.17 3.70 -177.89 -0.66 -17.82 16 17 C -0.21 -6.46 10.70 -15.06 -0.16 -6.62 16 18 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.92 -29.09 11.39 55.49 0.63 -28.46 16 21 Si 0.91 23.42 29.55 -169.99 -5.02 18.39 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.11 2.67 8.27 -2.97 -0.02 2.64 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.80 6.19 -51.93 -0.32 0.48 16 29 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 30 H 0.09 1.06 4.70 -51.93 -0.24 0.82 16 31 H 0.17 1.70 3.64 -52.49 -0.19 1.51 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.64 6.71 -51.93 -0.35 1.29 16 38 H 0.10 1.93 7.89 -51.93 -0.41 1.52 16 39 H 0.06 1.67 5.61 -51.93 -0.29 1.37 16 40 H 0.06 1.80 7.17 -51.93 -0.37 1.43 16 41 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.21 6.39 -51.93 -0.33 0.88 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -36.79 336.60 -8.38 -45.17 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.21 Total: 1.68 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.75 Total: 4.47 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.52 Total: -62.81 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.06 Total: -11.97 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.79 -8.38 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952372416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.128 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds