Wall clock time and date at job start Tue Mar 31 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47024 * 2 1 4 4 C 1.34783 * 119.99852 * 82.84208 * 3 2 1 5 5 O 1.21623 * 119.99460 * 181.56867 * 4 3 2 6 6 C 1.47255 * 119.99880 * 1.55900 * 4 3 2 7 7 C 1.46693 * 126.94491 * 350.71952 * 6 4 3 8 8 C 1.34485 * 106.33251 * 179.97438 * 7 6 4 9 9 C 1.50702 * 125.57010 * 179.97438 * 8 7 6 10 10 N 1.36448 * 108.85952 * 359.97438 * 8 7 6 11 11 H 0.96998 * 124.85412 * 180.02562 * 10 8 7 12 12 C 1.34662 * 110.29290 * 359.72981 * 10 8 7 13 13 C 1.50700 * 125.79856 * 180.28675 * 12 10 8 14 14 C 1.46501 * 120.00365 * 262.83903 * 3 2 1 15 15 C 1.53943 * 113.74289 * 223.12750 * 14 3 2 16 16 N 1.47815 * 86.03516 * 222.08074 * 15 14 3 17 17 C 1.36937 * 134.45213 * 204.63876 * 16 15 14 18 18 H 1.07998 * 119.99411 * 179.86739 * 17 16 15 19 19 C 1.38808 * 120.00465 * 359.87532 * 17 16 15 20 20 N 1.31619 * 120.00031 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99900 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47345 * 89.99785 * 21 19 17 23 23 H 1.48502 * 109.47354 * 209.99418 * 21 19 17 24 24 H 1.48498 * 109.47356 * 329.99754 * 21 19 17 25 25 C 1.47583 * 91.04859 * 24.54836 * 16 15 14 26 26 H 1.09002 * 109.46664 * 60.00118 * 1 2 3 27 27 H 1.09005 * 109.46593 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47095 * 299.99806 * 1 2 3 29 29 H 1.09003 * 109.47515 * 240.00493 * 2 1 3 30 30 H 1.08998 * 109.47352 * 120.00075 * 2 1 3 31 31 H 1.08000 * 126.83237 * 0.02562 * 7 6 4 32 32 H 1.08993 * 109.47292 * 90.00369 * 9 8 7 33 33 H 1.08997 * 109.46992 * 210.00337 * 9 8 7 34 34 H 1.09005 * 109.46775 * 329.99810 * 9 8 7 35 35 H 1.09010 * 109.46799 * 270.18552 * 13 12 10 36 36 H 1.08994 * 109.47474 * 30.18266 * 13 12 10 37 37 H 1.09001 * 109.47609 * 150.19136 * 13 12 10 38 38 H 1.09005 * 112.94148 * 354.71744 * 14 3 2 39 39 H 1.09006 * 113.77129 * 336.34733 * 15 14 3 40 40 H 1.09005 * 113.77302 * 107.73994 * 15 14 3 41 41 H 0.96997 * 119.99984 * 180.02562 * 20 19 17 42 42 H 1.09000 * 113.76320 * 221.14841 * 25 16 15 43 43 H 1.09004 * 113.76811 * 89.75632 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1058 2.0651 1.1582 5 8 2.4841 3.2210 1.1547 6 6 1.7432 1.4127 2.4276 7 6 1.0962 0.1067 2.5944 8 6 0.9603 -0.0815 3.9191 9 6 0.3442 -1.2909 4.5740 10 7 1.4714 1.0014 4.5732 11 1 1.4926 1.1077 5.5371 12 6 1.9482 1.8987 3.6894 13 6 2.5939 3.2164 4.0325 14 6 2.4116 2.0192 -1.2588 15 6 3.7155 2.8316 -1.1610 16 7 3.0228 3.8485 -1.9802 17 6 3.4362 4.8410 -2.8282 18 1 2.7080 5.4672 -3.3221 19 6 4.7911 5.0421 -3.0533 20 7 5.6785 4.2791 -2.4511 21 14 5.3548 6.3955 -4.2107 22 1 5.5489 7.6529 -3.4447 23 1 6.6372 6.0006 -4.8469 24 1 4.3265 6.6092 -5.2605 25 6 1.7075 3.3632 -1.5189 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.7907 -0.5694 1.8096 32 1 1.1174 -2.0357 4.7621 33 1 -0.1156 -0.9982 5.5179 34 1 -0.4149 -1.7134 3.9156 35 1 1.8298 3.9919 4.0879 36 1 3.0985 3.1341 4.9951 37 1 3.3203 3.4766 3.2625 38 1 2.3823 1.3368 -2.1083 39 1 3.9498 3.1665 -0.1505 40 1 4.5630 2.3644 -1.6628 41 1 6.6253 4.4198 -2.6081 42 1 0.9547 3.3198 -2.3060 43 1 1.3506 3.8547 -0.6138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952372416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:05 Heat of formation + Delta-G solvation = 67.496215 kcal Electronic energy + Delta-G solvation = -24143.079887 eV Core-core repulsion = 20805.143533 eV Total energy + Delta-G solvation = -3337.936354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39534 -40.94896 -38.34508 -36.80036 -34.22504 -33.45087 -32.07519 -31.07265 -29.98147 -29.23695 -26.53451 -26.13712 -25.00475 -24.24233 -22.72961 -21.70519 -20.92546 -18.99635 -18.72511 -17.67272 -17.36032 -16.96805 -16.42574 -16.25301 -15.72320 -15.50159 -15.44968 -14.96593 -14.33309 -14.12560 -14.03189 -13.95294 -13.71751 -13.59931 -13.34230 -13.12878 -12.95567 -12.88608 -12.79627 -12.69473 -12.59855 -12.36703 -12.27525 -12.00342 -11.91196 -11.65321 -11.43868 -10.93993 -10.34176 -9.64042 -9.38053 -8.85549 -8.82138 -7.87967 -5.21701 0.84908 1.42744 1.47357 1.54242 1.55790 2.09057 2.40251 2.53566 2.65321 3.30500 3.55123 3.87029 3.92495 3.96326 4.15741 4.24923 4.29051 4.37753 4.51710 4.56360 4.61377 4.67544 4.70521 4.73502 4.88043 4.91396 4.95020 4.96253 5.07775 5.09703 5.11642 5.24540 5.26650 5.36275 5.44002 5.52279 5.53907 5.90418 5.93109 6.02624 6.09898 6.68287 6.78486 6.92753 7.54167 7.61446 8.60904 9.29467 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.004118 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.111404 B = 6797.882265 C = 7459.816348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 N -0.597 5.597 4 C 0.572 3.428 5 O -0.578 6.578 6 C -0.256 4.256 7 C -0.197 4.197 8 C 0.016 3.984 9 C -0.080 4.080 10 N -0.536 5.536 11 H 0.428 0.572 12 C 0.091 3.909 13 C -0.087 4.087 14 C 0.126 3.874 15 C 0.155 3.845 16 N -0.632 5.632 17 C -0.236 4.236 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.955 5.955 21 Si 0.985 3.015 22 H -0.290 1.290 23 H -0.289 1.289 24 H -0.264 1.264 25 C 0.116 3.884 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.028 0.972 40 H 0.033 0.967 41 H 0.248 0.752 42 H 0.054 0.946 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -16.624 16.349 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.039 4.039 3 N -0.328 5.328 4 C 0.364 3.636 5 O -0.459 6.459 6 C -0.266 4.266 7 C -0.220 4.220 8 C -0.094 4.094 9 C -0.137 4.137 10 N -0.134 5.134 11 H 0.267 0.733 12 C -0.028 4.028 13 C -0.144 4.144 14 C 0.021 3.979 15 C 0.029 3.971 16 N -0.359 5.359 17 C -0.365 4.365 18 H 0.100 0.900 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.813 3.187 22 H -0.217 1.217 23 H -0.215 1.215 24 H -0.188 1.188 25 C -0.010 4.010 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.203 0.797 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.928 -15.886 16.286 26.167 hybrid contribution 0.840 1.435 -0.292 1.688 sum -12.088 -14.451 15.993 24.713 Atomic orbital electron populations 1.22347 0.94639 1.03737 1.02136 1.22430 0.95504 0.81046 1.04898 1.47844 1.64506 1.15010 1.05445 1.17987 0.76644 0.85083 0.83904 1.90778 1.48772 1.19011 1.87375 1.20225 1.15198 1.00001 0.91179 1.23007 1.06395 0.96244 0.96328 1.20927 1.04447 0.91883 0.92128 1.20446 1.00811 0.91516 1.00959 1.41497 1.47379 1.15148 1.09386 0.73261 1.20280 1.00078 0.93598 0.88848 1.20409 1.00355 0.90991 1.02693 1.23356 0.95453 0.92844 0.86229 1.22547 0.93781 0.87425 0.93362 1.46111 1.03001 1.37851 1.48900 1.19457 0.91755 1.08439 1.16817 0.89978 1.25723 0.95559 1.02359 1.02669 1.70073 1.00216 1.42344 1.47724 0.84982 0.77541 0.77983 0.78218 1.21692 1.21543 1.18828 1.22931 0.89324 0.92606 0.96186 0.93365 0.88203 0.92338 0.89345 0.87542 0.79702 0.89819 0.90299 0.88692 0.90620 0.89014 0.92054 0.85849 0.95465 0.94859 0.94362 0.92825 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.64 71.98 0.62 -2.60 16 2 C 0.08 1.93 5.65 86.38 0.49 2.42 16 3 N -0.60 -21.22 2.75 -807.58 -2.22 -23.44 16 4 C 0.57 22.77 7.02 86.61 0.61 23.38 16 5 O -0.58 -28.71 10.67 -4.10 -0.04 -28.76 16 6 C -0.26 -7.92 5.98 -19.04 -0.11 -8.03 16 7 C -0.20 -4.25 7.27 23.62 0.17 -4.08 16 8 C 0.02 0.26 7.13 40.98 0.29 0.55 16 9 C -0.08 -0.60 10.41 71.24 0.74 0.15 16 10 N -0.54 -9.39 5.90 -171.07 -1.01 -10.40 16 11 H 0.43 4.34 8.96 -92.71 -0.83 3.51 16 12 C 0.09 2.41 7.17 41.78 0.30 2.71 16 13 C -0.09 -2.32 9.79 71.24 0.70 -1.62 16 14 C 0.13 5.41 4.60 46.75 0.21 5.62 16 15 C 0.16 8.69 6.79 86.44 0.59 9.27 16 16 N -0.63 -37.36 3.70 -716.72 -2.65 -40.02 16 17 C -0.24 -14.76 10.70 84.03 0.90 -13.86 16 18 H 0.08 4.88 7.83 -2.91 -0.02 4.86 16 19 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 20 N -0.95 -62.85 11.39 21.65 0.25 -62.60 16 21 Si 0.99 49.23 29.55 68.60 2.03 51.26 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.12 5.63 8.27 86.48 0.72 6.35 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.06 1.24 6.19 -2.39 -0.01 1.23 16 29 H 0.09 1.82 7.85 -2.39 -0.02 1.80 16 30 H 0.11 2.22 4.70 -2.39 -0.01 2.21 16 31 H 0.19 3.13 3.64 -2.91 -0.01 3.12 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 2.17 6.71 -2.39 -0.02 2.15 16 38 H 0.12 4.70 7.89 -2.38 -0.02 4.69 16 39 H 0.03 1.71 5.61 -2.38 -0.01 1.70 16 40 H 0.03 2.02 7.17 -2.38 -0.02 2.00 16 41 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.03 1.62 6.39 -2.38 -0.02 1.61 16 Total: -1.00 -86.37 336.60 3.24 -83.13 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.21 Total: 14.46 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.69 Total: 16.35 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.64 Total: -136.45 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.04 Total: -28.76 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Total: -86.37 3.24 -83.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952372416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.626 kcal (2) G-P(sol) polarization free energy of solvation -86.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds