Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46866 * 2 1 4 4 C 1.34781 * 120.00139 * 269.84306 * 3 2 1 5 5 O 1.21691 * 119.99811 * 186.18877 * 4 3 2 6 6 C 1.46674 * 119.99865 * 6.18602 * 4 3 2 7 7 C 1.37871 * 126.23340 * 8.16928 * 6 4 3 8 8 C 1.39839 * 107.08878 * 179.97438 * 7 6 4 9 9 C 1.35452 * 107.85852 * 359.97438 * 8 7 6 10 10 N 1.35533 * 108.87533 * 359.73640 * 9 8 7 11 11 C 1.46497 * 125.67829 * 180.30781 * 10 9 8 12 12 C 1.53004 * 109.46735 * 259.87606 * 11 10 9 13 13 C 1.46502 * 119.99905 * 89.83925 * 3 2 1 14 14 C 1.53501 * 114.20238 * 120.00094 * 13 3 2 15 15 N 1.47067 * 87.98718 * 87.52259 * 14 13 3 16 16 C 1.36935 * 136.06039 * 207.08788 * 15 14 13 17 17 H 1.08004 * 119.99471 * 8.66912 * 16 15 14 18 18 C 1.38810 * 120.00240 * 188.66892 * 16 15 14 19 19 N 1.31618 * 120.00043 * 195.33571 * 18 16 15 20 20 Si 1.86802 * 119.99849 * 15.33643 * 18 16 15 21 21 H 1.48501 * 109.46975 * 269.99739 * 20 18 16 22 22 H 1.48496 * 109.47194 * 29.99690 * 20 18 16 23 23 H 1.48501 * 109.46931 * 150.00198 * 20 18 16 24 24 C 1.47075 * 87.88488 * 27.33892 * 15 14 13 25 25 H 1.09000 * 109.47125 * 52.06045 * 1 2 3 26 26 H 1.09004 * 109.47063 * 172.05329 * 1 2 3 27 27 H 1.08997 * 109.47577 * 292.05617 * 1 2 3 28 28 H 1.08997 * 109.47619 * 240.00271 * 2 1 3 29 29 H 1.08997 * 109.47280 * 119.99866 * 2 1 3 30 30 H 1.08006 * 126.45755 * 359.95667 * 7 6 4 31 31 H 1.07998 * 126.07258 * 180.02562 * 8 7 6 32 32 H 1.08007 * 125.56284 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.47400 * 19.87445 * 11 10 9 34 34 H 1.09000 * 109.47389 * 139.88567 * 11 10 9 35 35 H 1.08999 * 109.47292 * 65.03640 * 12 11 10 36 36 H 1.09000 * 109.47170 * 185.03802 * 12 11 10 37 37 H 1.09003 * 109.47419 * 305.03506 * 12 11 10 38 38 H 1.08999 * 113.28435 * 346.93440 * 13 3 2 39 39 H 1.08995 * 113.46765 * 332.73845 * 14 13 3 40 40 H 1.09005 * 113.46233 * 202.30062 * 14 13 3 41 41 H 0.97000 * 119.99947 * 354.92750 * 19 18 16 42 42 H 1.08997 * 113.46712 * 87.43986 * 24 15 14 43 43 H 1.08998 * 113.46414 * 217.88083 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2459 2.0156 -1.1672 5 8 2.7569 3.1200 -1.1699 6 6 1.8779 1.3747 -2.4341 7 6 1.1560 0.2089 -2.5781 8 6 1.0373 -0.0342 -3.9501 9 6 1.6742 0.9655 -4.6056 10 7 2.1839 1.8314 -3.6960 11 6 2.9381 3.0488 -4.0045 12 6 4.4345 2.7782 -3.8355 13 6 2.2591 2.0731 1.2688 14 6 3.7087 2.5374 1.4671 15 7 3.3519 3.7799 0.7660 16 6 4.0146 4.7129 0.0139 17 1 5.0352 4.5346 -0.2910 18 6 3.3746 5.8876 -0.3567 19 7 3.8796 6.6390 -1.3120 20 14 1.7966 6.4019 0.5006 21 1 0.6318 5.8317 -0.2228 22 1 1.8060 5.8993 1.8979 23 1 1.6977 7.8836 0.5080 24 6 1.9714 3.5831 1.2333 25 1 -0.3633 0.6318 -0.8105 26 1 -0.3633 -1.0178 -0.1421 27 1 -0.3634 0.3859 0.9524 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.7575 -0.4018 -1.7813 31 1 0.5276 -0.8700 -4.4061 32 1 1.7584 1.0595 -5.6783 33 1 2.7372 3.3501 -5.0326 34 1 2.6343 3.8461 -3.3262 35 1 4.7569 2.0449 -4.5746 36 1 4.9897 3.7054 -3.9774 37 1 4.6230 2.3916 -2.8339 38 1 1.8337 1.5561 2.1289 39 1 4.4365 1.9294 0.9299 40 1 3.9761 2.6905 2.5127 41 1 4.7361 6.4116 -1.7063 42 1 1.7809 4.0118 2.2172 43 1 1.2193 3.8660 0.4968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957393107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = 124.396369 kcal Electronic energy + Delta-G solvation = -25624.967342 eV Core-core repulsion = 22289.498363 eV Total energy + Delta-G solvation = -3335.468978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46950 -41.08703 -38.12496 -36.99575 -34.83206 -34.26285 -31.52670 -30.22595 -30.08201 -29.15960 -26.84066 -25.14218 -24.52598 -24.02525 -22.77339 -21.78131 -20.73058 -19.56330 -19.18110 -18.05819 -17.14794 -17.04318 -16.31472 -16.13117 -15.87573 -15.68748 -15.35071 -15.21770 -15.14321 -14.93663 -14.32915 -14.10834 -13.54708 -13.35124 -13.29554 -13.13368 -13.00278 -12.85061 -12.67387 -12.61157 -12.34394 -12.26496 -12.11394 -11.92667 -11.74200 -11.37259 -11.12235 -10.75555 -10.12714 -9.58527 -9.33772 -8.99843 -8.66943 -8.31019 -5.06139 0.76455 1.36212 1.48354 1.62842 1.77300 1.97002 2.38534 2.66611 2.69469 3.19152 3.45797 3.65689 3.74120 3.83106 4.05073 4.15572 4.19759 4.30802 4.38947 4.46790 4.48938 4.51877 4.55961 4.66723 4.70086 4.73868 4.77285 4.85139 4.87922 4.97297 5.02471 5.07795 5.18292 5.30286 5.35421 5.42187 5.51899 5.94403 6.05958 6.17097 6.18210 6.43331 6.73008 6.95037 7.64452 7.74415 8.57621 9.20177 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.008465 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.575756 B = 3307.009006 C = 4387.475598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 N -0.591 5.591 4 C 0.524 3.476 5 O -0.481 6.481 6 C -0.077 4.077 7 C -0.168 4.168 8 C -0.216 4.216 9 C 0.001 3.999 10 N -0.418 5.418 11 C 0.107 3.893 12 C -0.135 4.135 13 C 0.134 3.866 14 C 0.101 3.899 15 N -0.621 5.621 16 C -0.195 4.195 17 H 0.023 0.977 18 C -0.088 4.088 19 N -0.989 5.989 20 Si 1.103 2.897 21 H -0.309 1.309 22 H -0.252 1.252 23 H -0.314 1.314 24 C 0.090 3.910 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.192 0.808 31 H 0.169 0.831 32 H 0.192 0.808 33 H 0.113 0.887 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.151 0.849 39 H 0.024 0.976 40 H 0.067 0.933 41 H 0.235 0.765 42 H 0.066 0.934 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 -20.424 -0.424 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.035 4.035 3 N -0.326 5.326 4 C 0.311 3.689 5 O -0.353 6.353 6 C -0.190 4.190 7 C -0.193 4.193 8 C -0.240 4.240 9 C -0.133 4.133 10 N -0.092 5.092 11 C -0.015 4.015 12 C -0.193 4.193 13 C 0.029 3.971 14 C -0.026 4.026 15 N -0.348 5.348 16 C -0.324 4.324 17 H 0.041 0.959 18 C -0.277 4.277 19 N -0.640 5.640 20 Si 0.934 3.066 21 H -0.238 1.238 22 H -0.177 1.177 23 H -0.243 1.243 24 C -0.036 4.036 25 H 0.063 0.937 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.209 0.791 31 H 0.187 0.813 32 H 0.209 0.791 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.168 0.832 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.084 -18.208 -0.581 20.357 hybrid contribution 1.842 -0.260 -0.472 1.919 sum -7.242 -18.469 -1.053 19.866 Atomic orbital electron populations 1.22356 0.94934 1.03542 1.02396 1.22384 0.95174 0.80761 1.05160 1.47301 1.67089 1.14778 1.03424 1.18046 0.80168 0.86749 0.83905 1.91527 1.38780 1.18747 1.86253 1.20574 1.12011 1.00689 0.85771 1.22773 1.01766 0.95933 0.98870 1.21226 1.07456 1.01990 0.93306 1.22615 1.02126 0.92295 0.96312 1.44241 1.40139 1.19274 1.05511 1.21759 0.92105 0.85082 1.02527 1.21759 0.94549 1.02029 1.00949 1.22555 0.95805 0.92050 0.86720 1.23029 0.96274 0.87300 0.95954 1.45713 1.05698 1.26789 1.56586 1.19268 0.95355 0.95227 1.22518 0.95899 1.26334 1.07114 0.94595 0.99703 1.70989 1.19700 1.45889 1.27382 0.83230 0.72924 0.73726 0.76686 1.23800 1.17664 1.24281 1.23117 0.88307 0.95052 0.97097 0.93739 0.88365 0.91736 0.88535 0.87966 0.79112 0.81328 0.79121 0.86921 0.92330 0.90328 0.92114 0.95376 0.83172 0.95754 0.91517 0.95615 0.91685 0.95844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.55 71.98 0.62 -2.30 16 2 C 0.09 1.74 5.59 86.38 0.48 2.23 16 3 N -0.59 -18.94 2.74 -801.29 -2.20 -21.14 16 4 C 0.52 21.68 7.13 86.45 0.62 22.30 16 5 O -0.48 -25.12 7.79 -4.32 -0.03 -25.16 16 6 C -0.08 -2.75 6.70 40.35 0.27 -2.48 16 7 C -0.17 -4.45 7.54 22.57 0.17 -4.28 16 8 C -0.22 -5.00 10.81 22.01 0.24 -4.76 16 9 C 0.00 0.02 11.36 83.48 0.95 0.97 16 10 N -0.42 -14.29 2.77 -511.03 -1.41 -15.70 16 11 C 0.11 3.99 6.11 86.38 0.53 4.51 16 12 C -0.14 -5.03 10.13 71.98 0.73 -4.30 16 13 C 0.13 4.29 4.88 45.55 0.22 4.51 16 14 C 0.10 3.96 8.21 83.19 0.68 4.64 16 15 N -0.62 -31.63 1.94 -737.89 -1.43 -33.06 16 16 C -0.20 -12.12 8.54 84.03 0.72 -11.40 16 17 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 18 C -0.09 -5.69 5.33 84.86 0.45 -5.24 16 19 N -0.99 -68.62 13.70 21.65 0.30 -68.32 16 20 Si 1.10 60.15 25.52 68.60 1.75 61.90 16 21 H -0.31 -16.92 6.97 99.48 0.69 -16.23 16 22 H -0.25 -12.02 5.69 99.48 0.57 -11.45 16 23 H -0.31 -17.36 7.11 99.48 0.71 -16.65 16 24 C 0.09 3.85 4.57 83.27 0.38 4.23 16 25 H 0.04 0.99 6.64 -2.39 -0.02 0.97 16 26 H 0.10 1.00 8.11 -2.38 -0.02 0.98 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.97 4.82 -2.39 -0.01 1.96 16 29 H 0.10 1.48 8.07 -2.39 -0.02 1.46 16 30 H 0.19 3.85 3.15 -2.91 -0.01 3.84 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.11 3.33 8.10 -2.39 -0.02 3.31 16 34 H 0.06 2.88 6.78 -2.39 -0.02 2.86 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.03 1.23 7.67 -2.39 -0.02 1.21 16 38 H 0.15 3.16 8.10 -2.39 -0.02 3.14 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.23 16.49 8.73 -92.71 -0.81 15.68 16 42 H 0.07 2.54 7.00 -2.39 -0.02 2.53 16 43 H 0.02 1.14 5.69 -2.39 -0.01 1.13 16 Total: -1.00 -86.32 327.43 4.83 -81.49 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.81 Total: 11.35 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 7.05 Total: 8.64 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -4.75 Total: -138.23 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.03 Total: -25.16 kcal Atomic # 14 Polarization: 60.15 SS G_CDS: 1.75 Total: 61.90 kcal Total: -86.32 4.83 -81.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957393107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.889 kcal (2) G-P(sol) polarization free energy of solvation -86.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds