Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00302 * 2 1 4 4 O 1.21698 * 120.00507 * 184.29514 * 3 2 1 5 5 C 1.46675 * 120.00047 * 4.30209 * 3 2 1 6 6 C 1.37869 * 126.24032 * 173.17440 * 5 3 2 7 7 C 1.39829 * 107.09179 * 179.97438 * 6 5 3 8 8 C 1.35452 * 107.86259 * 359.97438 * 7 6 5 9 9 N 1.35534 * 108.87309 * 359.73577 * 8 7 6 10 10 H 0.97002 * 125.68268 * 180.30427 * 9 8 7 11 11 C 1.46503 * 120.00117 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46807 * 298.07779 * 11 2 1 13 13 C 1.53002 * 109.47034 * 59.99744 * 12 11 2 14 14 C 1.52999 * 109.47040 * 60.00241 * 13 12 11 15 15 N 1.46500 * 109.47053 * 180.02562 * 14 13 12 16 16 C 1.36943 * 119.99542 * 274.99451 * 15 14 13 17 17 H 1.07992 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99465 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00580 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99570 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48513 * 109.46928 * 119.99785 * 20 18 16 23 23 H 1.48497 * 109.47454 * 239.99718 * 20 18 16 24 24 C 1.53007 * 109.47010 * 299.99773 * 14 13 12 25 25 C 1.52999 * 109.47309 * 58.07563 * 11 2 1 26 26 H 1.08993 * 109.46982 * 184.10669 * 1 2 3 27 27 H 1.09002 * 109.46833 * 304.10726 * 1 2 3 28 28 H 1.09002 * 109.47405 * 64.10156 * 1 2 3 29 29 H 1.08006 * 126.45173 * 0.02562 * 6 5 3 30 30 H 1.07996 * 126.07335 * 179.97438 * 7 6 5 31 31 H 1.08008 * 125.56586 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.47541 * 178.08203 * 11 2 1 33 33 H 1.08998 * 109.46818 * 180.02562 * 12 11 2 34 34 H 1.08995 * 109.46877 * 299.99633 * 12 11 2 35 35 H 1.09002 * 109.47056 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47081 * 300.00092 * 13 12 11 37 37 H 1.08998 * 109.47296 * 59.99438 * 14 13 12 38 38 H 0.96996 * 120.00303 * 95.00419 * 15 14 13 39 39 H 0.97001 * 120.00586 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.47262 * 300.00242 * 24 14 13 41 41 H 1.08995 * 109.47365 * 180.02562 * 24 14 13 42 42 H 1.09004 * 109.46835 * 59.99846 * 25 11 2 43 43 H 1.08999 * 109.47305 * 180.02562 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3533 1.1687 -0.0789 5 6 1.4087 2.4357 0.0953 6 6 1.9664 3.6884 0.2386 7 6 0.9114 4.6048 0.2866 8 6 -0.2467 3.9115 0.1736 9 7 0.0419 2.5930 0.0505 10 1 -0.6068 1.8788 -0.0500 11 6 2.1975 -1.2687 -0.0006 12 6 1.8645 -2.0504 1.2719 13 6 0.3609 -2.3295 1.3201 14 6 -0.0446 -3.1521 0.0955 15 7 -1.4844 -3.4188 0.1414 16 6 -1.9604 -4.4875 0.8533 17 1 -1.2744 -5.1333 1.3811 18 6 -3.3245 -4.7405 0.8963 19 7 -4.1605 -3.9538 0.2525 20 14 -3.9739 -6.1978 1.8680 21 1 -2.8382 -6.9194 2.4962 22 1 -4.8988 -5.7154 2.9251 23 1 -4.7010 -7.1167 0.9558 24 6 0.2884 -2.3704 -1.1770 25 6 1.7920 -2.0913 -1.2252 26 1 -0.3633 -1.0250 0.0736 27 1 -0.3633 0.5763 0.8509 28 1 -0.3634 0.4489 -0.9245 29 1 3.0198 3.9185 0.3011 30 1 1.0035 5.6754 0.3945 31 1 -1.2382 4.3399 0.1761 32 1 3.2686 -1.0699 -0.0349 33 1 2.4098 -2.9942 1.2717 34 1 2.1534 -1.4645 2.1443 35 1 0.1237 -2.8868 2.2264 36 1 -0.1840 -1.3856 1.3205 37 1 0.5004 -4.0960 0.0951 38 1 -2.1005 -2.8387 -0.3326 39 1 -5.1138 -4.1308 0.2823 40 1 -0.2566 -1.4264 -1.1766 41 1 -0.0009 -2.9562 -2.0494 42 1 2.0291 -1.5344 -2.1317 43 1 2.3366 -3.0354 -1.2254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963053395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = 81.088141 kcal Electronic energy + Delta-G solvation = -24203.675170 eV Core-core repulsion = 20866.328206 eV Total energy + Delta-G solvation = -3337.346964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64714 -40.23934 -38.11086 -35.02826 -33.41928 -31.63734 -30.85576 -30.55148 -29.26387 -28.88501 -26.27031 -23.90902 -22.71949 -22.28396 -21.21617 -20.47937 -20.12022 -19.42930 -17.86469 -17.16268 -16.27704 -16.02016 -15.50342 -15.10051 -14.45906 -14.41973 -14.08104 -13.66934 -13.53848 -13.41610 -13.21324 -12.85168 -12.75657 -12.50991 -12.40172 -12.32213 -12.11219 -11.92808 -11.39471 -11.02768 -10.93010 -10.84484 -10.40883 -10.21741 -10.15737 -9.91522 -9.62293 -9.27562 -9.10152 -8.94625 -8.64941 -8.27106 -7.06806 -5.86505 -3.15567 1.44204 2.66437 2.87415 3.16995 3.36941 3.38687 3.43645 3.45106 4.48735 4.51833 4.89200 4.94202 4.96814 4.99445 5.13782 5.16958 5.26039 5.37067 5.42216 5.47217 5.58716 5.63657 5.70898 5.78009 5.85843 5.87906 5.96718 5.99133 6.06313 6.22399 6.25493 6.36869 6.42404 6.51268 6.63121 6.68673 6.85803 6.86558 6.98604 7.26783 7.36817 7.63265 8.13707 8.32006 9.43660 9.98907 10.33490 11.36113 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.004071 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.440188 B = 6876.072634 C = 7695.494502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.596 5.596 3 C 0.587 3.413 4 O -0.538 6.538 5 C -0.051 4.051 6 C -0.113 4.113 7 C -0.215 4.215 8 C 0.015 3.985 9 N -0.544 5.544 10 H 0.423 0.577 11 C 0.141 3.859 12 C -0.125 4.125 13 C -0.166 4.166 14 C 0.174 3.826 15 N -0.726 5.726 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.160 4.160 25 C -0.121 4.121 26 H 0.167 0.833 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.170 0.830 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.382 0.618 39 H 0.255 0.745 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 12.730 -1.348 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.329 5.329 3 C 0.377 3.623 4 O -0.415 6.415 5 C -0.165 4.165 6 C -0.140 4.140 7 C -0.239 4.239 8 C -0.122 4.122 9 N -0.147 5.147 10 H 0.269 0.731 11 C 0.038 3.962 12 C -0.164 4.164 13 C -0.206 4.206 14 C 0.064 3.936 15 N -0.366 5.366 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.197 4.197 25 C -0.160 4.160 26 H 0.184 0.816 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.187 0.813 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.215 0.785 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.592 12.342 -1.321 15.687 hybrid contribution -1.171 -0.782 0.406 1.465 sum 8.421 11.560 -0.915 14.331 Atomic orbital electron populations 1.23678 0.81070 1.09475 0.99540 1.47686 1.06434 1.05785 1.72944 1.17189 0.86689 0.82095 0.76361 1.90796 1.12811 1.86696 1.51222 1.20443 0.82700 0.95417 1.17896 1.21287 0.99536 0.90054 1.03098 1.20881 0.91690 0.99566 1.11796 1.22131 1.00278 0.83246 1.06550 1.43295 1.07128 1.09001 1.55285 0.73103 1.21177 0.97147 0.82115 0.95718 1.21881 0.98366 0.99770 0.96429 1.22898 0.93766 1.01955 1.01944 1.20264 0.86986 0.95648 0.90718 1.42446 1.00295 1.33238 1.60636 1.19279 0.90863 1.03616 1.23218 0.91093 1.24721 0.96027 0.99196 1.00847 1.69649 1.02174 1.39540 1.46816 0.86149 0.78728 0.82176 0.79324 1.20546 1.21875 1.21856 1.22547 0.95326 1.01989 0.99885 1.21808 0.97259 0.99875 0.97076 0.81613 0.92286 0.92626 0.83734 0.84149 0.81318 0.88266 0.90835 0.92333 0.91628 0.90481 0.93095 0.78459 0.93536 0.89883 0.91504 0.91971 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 4.84 59.84 0.29 0.34 16 2 N -0.60 -8.12 2.76 -175.48 -0.48 -8.60 16 3 C 0.59 8.93 7.64 -12.85 -0.10 8.83 16 4 O -0.54 -9.60 16.23 5.19 0.08 -9.51 16 5 C -0.05 -0.69 6.77 -81.98 -0.55 -1.25 16 6 C -0.11 -1.43 10.66 -39.12 -0.42 -1.85 16 7 C -0.22 -2.24 10.81 -39.98 -0.43 -2.67 16 8 C 0.01 0.14 11.89 -16.91 -0.20 -0.06 16 9 N -0.54 -5.91 5.22 -9.39 -0.05 -5.96 16 10 H 0.42 4.01 4.53 -40.82 -0.19 3.83 16 11 C 0.14 1.91 3.16 -67.93 -0.21 1.69 16 12 C -0.13 -1.72 5.63 -26.73 -0.15 -1.87 16 13 C -0.17 -2.67 5.13 -26.73 -0.14 -2.81 16 14 C 0.17 3.09 2.42 -67.93 -0.16 2.93 16 15 N -0.73 -16.56 5.12 -53.42 -0.27 -16.84 16 16 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 20 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 C -0.16 -2.38 5.01 -26.73 -0.13 -2.51 16 25 C -0.12 -1.58 5.62 -26.73 -0.15 -1.73 16 26 H 0.17 2.32 1.79 -51.93 -0.09 2.23 16 27 H 0.06 0.67 6.37 -51.93 -0.33 0.34 16 28 H 0.06 0.59 6.82 -51.93 -0.35 0.24 16 29 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.10 1.41 6.90 -51.93 -0.36 1.05 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.21 4.20 -51.93 -0.22 0.99 16 37 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.38 9.17 7.80 -40.82 -0.32 8.85 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.08 1.18 3.90 -51.93 -0.20 0.97 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 327.82 15.07 4.94 4.94 Total: -1.00 -31.01 327.82 -8.52 -39.53 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -5.83 Total: 13.67 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.61 Total: -7.78 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.08 Total: -57.45 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.01 -8.52 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963053395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.620 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds