Wall clock time and date at job start Tue Mar 31 2020 07:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00302 * 2 1 4 4 O 1.21698 * 120.00507 * 184.29514 * 3 2 1 5 5 C 1.46675 * 120.00047 * 4.30209 * 3 2 1 6 6 C 1.37869 * 126.24032 * 173.17440 * 5 3 2 7 7 C 1.39829 * 107.09179 * 179.97438 * 6 5 3 8 8 C 1.35452 * 107.86259 * 359.97438 * 7 6 5 9 9 N 1.35534 * 108.87309 * 359.73577 * 8 7 6 10 10 H 0.97002 * 125.68268 * 180.30427 * 9 8 7 11 11 C 1.46503 * 120.00117 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46807 * 298.07779 * 11 2 1 13 13 C 1.53002 * 109.47034 * 59.99744 * 12 11 2 14 14 C 1.52999 * 109.47040 * 60.00241 * 13 12 11 15 15 N 1.46500 * 109.47053 * 180.02562 * 14 13 12 16 16 C 1.36943 * 119.99542 * 274.99451 * 15 14 13 17 17 H 1.07992 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99465 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00580 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99570 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48513 * 109.46928 * 119.99785 * 20 18 16 23 23 H 1.48497 * 109.47454 * 239.99718 * 20 18 16 24 24 C 1.53007 * 109.47010 * 299.99773 * 14 13 12 25 25 C 1.52999 * 109.47309 * 58.07563 * 11 2 1 26 26 H 1.08993 * 109.46982 * 184.10669 * 1 2 3 27 27 H 1.09002 * 109.46833 * 304.10726 * 1 2 3 28 28 H 1.09002 * 109.47405 * 64.10156 * 1 2 3 29 29 H 1.08006 * 126.45173 * 0.02562 * 6 5 3 30 30 H 1.07996 * 126.07335 * 179.97438 * 7 6 5 31 31 H 1.08008 * 125.56586 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.47541 * 178.08203 * 11 2 1 33 33 H 1.08998 * 109.46818 * 180.02562 * 12 11 2 34 34 H 1.08995 * 109.46877 * 299.99633 * 12 11 2 35 35 H 1.09002 * 109.47056 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47081 * 300.00092 * 13 12 11 37 37 H 1.08998 * 109.47296 * 59.99438 * 14 13 12 38 38 H 0.96996 * 120.00303 * 95.00419 * 15 14 13 39 39 H 0.97001 * 120.00586 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.47262 * 300.00242 * 24 14 13 41 41 H 1.08995 * 109.47365 * 180.02562 * 24 14 13 42 42 H 1.09004 * 109.46835 * 59.99846 * 25 11 2 43 43 H 1.08999 * 109.47305 * 180.02562 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3533 1.1687 -0.0789 5 6 1.4087 2.4357 0.0953 6 6 1.9664 3.6884 0.2386 7 6 0.9114 4.6048 0.2866 8 6 -0.2467 3.9115 0.1736 9 7 0.0419 2.5930 0.0505 10 1 -0.6068 1.8788 -0.0500 11 6 2.1975 -1.2687 -0.0006 12 6 1.8645 -2.0504 1.2719 13 6 0.3609 -2.3295 1.3201 14 6 -0.0446 -3.1521 0.0955 15 7 -1.4844 -3.4188 0.1414 16 6 -1.9604 -4.4875 0.8533 17 1 -1.2744 -5.1333 1.3811 18 6 -3.3245 -4.7405 0.8963 19 7 -4.1605 -3.9538 0.2525 20 14 -3.9739 -6.1978 1.8680 21 1 -2.8382 -6.9194 2.4962 22 1 -4.8988 -5.7154 2.9251 23 1 -4.7010 -7.1167 0.9558 24 6 0.2884 -2.3704 -1.1770 25 6 1.7920 -2.0913 -1.2252 26 1 -0.3633 -1.0250 0.0736 27 1 -0.3633 0.5763 0.8509 28 1 -0.3634 0.4489 -0.9245 29 1 3.0198 3.9185 0.3011 30 1 1.0035 5.6754 0.3945 31 1 -1.2382 4.3399 0.1761 32 1 3.2686 -1.0699 -0.0349 33 1 2.4098 -2.9942 1.2717 34 1 2.1534 -1.4645 2.1443 35 1 0.1237 -2.8868 2.2264 36 1 -0.1840 -1.3856 1.3205 37 1 0.5004 -4.0960 0.0951 38 1 -2.1005 -2.8387 -0.3326 39 1 -5.1138 -4.1308 0.2823 40 1 -0.2566 -1.4264 -1.1766 41 1 -0.0009 -2.9562 -2.0494 42 1 2.0291 -1.5344 -2.1317 43 1 2.3366 -3.0354 -1.2254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963053395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:00 Heat of formation + Delta-G solvation = 62.018294 kcal Electronic energy + Delta-G solvation = -24204.502101 eV Core-core repulsion = 20866.328206 eV Total energy + Delta-G solvation = -3338.173894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.61915 -41.30783 -39.33312 -36.52526 -34.86728 -33.13551 -31.89506 -31.76565 -30.56958 -29.95698 -27.57521 -25.59120 -23.94046 -23.51298 -22.11211 -21.78978 -21.00379 -20.62092 -19.09437 -18.85288 -17.32338 -17.09957 -16.95583 -16.47829 -15.82031 -15.48482 -15.46545 -15.13906 -14.64217 -14.55397 -14.51580 -14.02792 -13.82266 -13.64127 -13.59061 -13.25002 -13.16633 -13.13151 -13.01630 -12.85210 -12.58328 -12.12747 -12.00865 -11.96668 -11.50575 -11.42764 -11.08534 -10.87308 -10.41305 -9.99397 -9.72377 -9.15657 -8.97953 -7.93258 -5.20096 0.46532 1.47468 1.49297 1.57507 1.82797 1.84576 2.28801 2.37313 2.56826 3.40771 3.49181 3.71752 3.82432 3.85596 3.98550 4.13648 4.22264 4.29275 4.33186 4.36335 4.43207 4.52634 4.55772 4.61063 4.63177 4.66403 4.75131 4.98162 5.05040 5.12067 5.12836 5.17600 5.26020 5.30380 5.42157 5.54718 5.56646 5.62954 5.79025 5.97999 6.27174 6.30205 6.51534 7.02381 7.37279 8.12000 8.35820 9.29925 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.004071 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.440188 B = 6876.072634 C = 7695.494502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.594 5.594 3 C 0.583 3.417 4 O -0.575 6.575 5 C -0.083 4.083 6 C -0.125 4.125 7 C -0.225 4.225 8 C 0.032 3.968 9 N -0.540 5.540 10 H 0.428 0.572 11 C 0.142 3.858 12 C -0.116 4.116 13 C -0.156 4.156 14 C 0.173 3.827 15 N -0.734 5.734 16 C -0.234 4.234 17 H 0.071 0.929 18 C -0.070 4.070 19 N -0.965 5.965 20 Si 0.962 3.038 21 H -0.270 1.270 22 H -0.295 1.295 23 H -0.296 1.296 24 C -0.151 4.151 25 C -0.112 4.112 26 H 0.150 0.850 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.209 0.791 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.009 13.720 -1.277 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.325 5.325 3 C 0.374 3.626 4 O -0.456 6.456 5 C -0.196 4.196 6 C -0.153 4.153 7 C -0.248 4.248 8 C -0.106 4.106 9 N -0.144 5.144 10 H 0.275 0.725 11 C 0.039 3.961 12 C -0.155 4.155 13 C -0.195 4.195 14 C 0.065 3.935 15 N -0.374 5.374 16 C -0.366 4.366 17 H 0.089 0.911 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.793 3.207 21 H -0.195 1.195 22 H -0.223 1.223 23 H -0.224 1.224 24 C -0.188 4.188 25 C -0.151 4.151 26 H 0.167 0.833 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.181 0.819 31 H 0.225 0.775 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.207 0.793 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.543 13.315 -1.242 16.429 hybrid contribution -1.109 -1.009 0.384 1.548 sum 8.434 12.306 -0.858 14.943 Atomic orbital electron populations 1.23649 0.80195 1.08708 1.01117 1.47707 1.06894 1.05464 1.72400 1.17461 0.86421 0.82902 0.75793 1.90764 1.14313 1.87260 1.53218 1.20271 0.83910 0.94819 1.20571 1.21511 1.00114 0.90668 1.02975 1.21212 0.91216 1.00590 1.11783 1.22825 1.01753 0.82374 1.03602 1.43286 1.06205 1.09885 1.55008 0.72470 1.21153 0.97042 0.82172 0.95684 1.21798 0.96517 1.00434 0.96744 1.22729 0.95581 1.01502 0.99727 1.20416 0.84175 0.95965 0.92957 1.42587 1.02279 1.32387 1.60131 1.19585 0.90943 1.03880 1.22199 0.91073 1.25384 0.96514 1.01753 1.02577 1.69772 1.01968 1.41208 1.48698 0.85234 0.78100 0.79539 0.77865 1.19456 1.22255 1.22356 1.22447 0.96840 1.01810 0.97712 1.21746 0.95745 1.00464 0.97140 0.83273 0.91185 0.90709 0.84268 0.81886 0.77459 0.88665 0.89725 0.92166 0.93868 0.89893 0.94118 0.79305 0.94123 0.88903 0.92311 0.91156 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.10 4.84 127.77 0.62 0.72 16 2 N -0.59 -15.46 2.76 -827.30 -2.28 -17.75 16 3 C 0.58 17.40 7.64 86.45 0.66 18.06 16 4 O -0.57 -20.65 16.23 -4.34 -0.07 -20.72 16 5 C -0.08 -2.14 6.77 40.35 0.27 -1.87 16 6 C -0.13 -3.06 10.66 22.57 0.24 -2.82 16 7 C -0.22 -4.11 10.81 22.01 0.24 -3.87 16 8 C 0.03 0.49 11.89 83.48 0.99 1.49 16 9 N -0.54 -10.47 5.22 -183.61 -0.96 -11.43 16 10 H 0.43 7.05 4.53 -92.71 -0.42 6.63 16 11 C 0.14 3.67 3.16 44.99 0.14 3.81 16 12 C -0.12 -3.04 5.63 30.60 0.17 -2.87 16 13 C -0.16 -4.91 5.13 30.59 0.16 -4.75 16 14 C 0.17 6.06 2.42 44.99 0.11 6.17 16 15 N -0.73 -33.44 5.12 -322.94 -1.65 -35.09 16 16 C -0.23 -12.22 9.93 84.03 0.83 -11.38 16 17 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 18 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 19 N -0.97 -55.80 13.06 21.65 0.28 -55.52 16 20 Si 0.96 44.54 29.55 68.60 2.03 46.57 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 24 C -0.15 -4.30 5.01 30.60 0.15 -4.14 16 25 C -0.11 -2.73 5.62 30.59 0.17 -2.56 16 26 H 0.15 3.99 1.79 -2.39 0.00 3.98 16 27 H 0.07 1.46 6.37 -2.39 -0.02 1.44 16 28 H 0.07 1.44 6.82 -2.39 -0.02 1.42 16 29 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.10 2.62 6.90 -2.39 -0.02 2.61 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 2.53 4.20 -2.39 -0.01 2.52 16 37 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.37 18.04 7.80 -92.71 -0.72 17.32 16 39 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.09 2.49 3.90 -2.39 -0.01 2.48 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.78 327.82 2.48 -64.30 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.09 Total: 37.00 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.23 Total: -7.36 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -4.61 Total: -119.79 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.78 2.48 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963053395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.319 kcal (2) G-P(sol) polarization free energy of solvation -66.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds