Wall clock time and date at job start Tue Mar 31 2020 07:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99824 * 2 1 4 4 O 1.21625 * 119.99913 * 181.13890 * 3 2 1 5 5 C 1.47264 * 120.00238 * 1.14573 * 3 2 1 6 6 C 1.46688 * 126.94158 * 348.67292 * 5 3 2 7 7 C 1.34482 * 106.33479 * 180.11983 * 6 5 3 8 8 N 1.36452 * 108.85358 * 359.60101 * 7 6 5 9 9 H 0.97004 * 124.84813 * 180.26603 * 8 7 6 10 10 C 1.34651 * 110.30024 * 0.26545 * 8 7 6 11 11 C 1.46500 * 120.00202 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47028 * 59.99765 * 11 2 1 13 13 C 1.53002 * 109.46816 * 180.02562 * 12 11 2 14 14 C 1.53005 * 109.47201 * 60.00237 * 13 12 11 15 15 N 1.46500 * 109.46897 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00024 * 274.99386 * 15 14 13 17 17 H 1.08001 * 119.99892 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99723 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00449 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99642 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47041 * 120.00293 * 20 18 16 23 23 H 1.48501 * 109.47100 * 240.00410 * 20 18 16 24 24 C 1.53001 * 109.47042 * 299.99625 * 14 13 12 25 25 C 1.53002 * 109.46816 * 60.00140 * 24 14 13 26 26 H 1.09000 * 109.47338 * 83.47640 * 1 2 3 27 27 H 1.09001 * 109.47035 * 203.47063 * 1 2 3 28 28 H 1.09001 * 109.47280 * 323.47873 * 1 2 3 29 29 H 1.08001 * 126.83395 * 359.97438 * 6 5 3 30 30 H 1.07998 * 125.57813 * 179.87141 * 7 6 5 31 31 H 1.07997 * 125.80724 * 180.02562 * 10 8 7 32 32 H 1.08992 * 109.47249 * 179.97438 * 11 2 1 33 33 H 1.08998 * 109.47438 * 299.99792 * 12 11 2 34 34 H 1.08998 * 109.47389 * 60.00649 * 12 11 2 35 35 H 1.09000 * 109.47458 * 299.99768 * 13 12 11 36 36 H 1.09003 * 109.47087 * 179.97438 * 13 12 11 37 37 H 1.08992 * 109.47395 * 59.99742 * 14 13 12 38 38 H 0.96999 * 119.99983 * 95.00237 * 15 14 13 39 39 H 0.97005 * 120.00445 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47438 * 300.00589 * 24 14 13 41 41 H 1.08998 * 109.47389 * 179.97438 * 24 14 13 42 42 H 1.09003 * 109.47087 * 180.02562 * 25 24 14 43 43 H 1.09000 * 109.47458 * 60.00232 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3549 1.1673 -0.0209 5 6 1.4028 2.4424 0.0255 6 6 -0.0373 2.6333 -0.1780 7 6 -0.2626 3.9548 -0.0705 8 7 0.9198 4.5839 0.1904 9 1 1.0230 5.5403 0.3153 10 6 1.9227 3.6874 0.2499 11 6 2.1976 -1.2687 -0.0006 12 6 1.8279 -2.0705 -1.2502 13 6 2.5925 -3.3957 -1.2504 14 6 2.2223 -4.1983 -0.0014 15 7 2.9540 -5.4675 -0.0020 16 6 2.4543 -6.5456 -0.6826 17 1 1.5210 -6.4601 -1.2193 18 6 3.1479 -7.7480 -0.6836 19 7 4.2855 -7.8521 -0.0300 20 14 2.4665 -9.2185 -1.6126 21 1 1.1837 -8.8438 -2.2602 22 1 3.4397 -9.6419 -2.6513 23 1 2.2348 -10.3384 -0.6654 24 6 2.5920 -3.3966 1.2481 25 6 1.8274 -2.0713 1.2484 26 1 -0.3634 0.1168 -1.0210 27 1 -0.3633 -0.9427 0.4093 28 1 -0.3634 0.8259 0.6116 29 1 -0.7705 1.8656 -0.3770 30 1 -1.2231 4.4385 -0.1698 31 1 2.9612 3.9129 0.4424 32 1 3.2691 -1.0695 -0.0009 33 1 0.7563 -2.2697 -1.2502 34 1 2.0913 -1.4986 -2.1399 35 1 3.6642 -3.1970 -1.2501 36 1 2.3288 -3.9672 -2.1404 37 1 1.1507 -4.3972 -0.0017 38 1 3.7924 -5.5443 0.4798 39 1 4.7700 -8.6925 -0.0303 40 1 3.6637 -3.1977 1.2484 41 1 2.3279 -3.9681 2.1379 42 1 2.0910 -1.4999 2.1384 43 1 0.7557 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963349152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:05 Heat of formation + Delta-G solvation = 29.636308 kcal Electronic energy + Delta-G solvation = -23241.767172 eV Core-core repulsion = 19902.189089 eV Total energy + Delta-G solvation = -3339.578083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43193 -39.66290 -37.71045 -35.35097 -33.45389 -31.56695 -30.41274 -30.30819 -29.42210 -27.68735 -26.74662 -23.96866 -22.66044 -22.13948 -21.10049 -20.48631 -19.31968 -19.17663 -18.21188 -16.98731 -16.29848 -15.88046 -15.32236 -14.99500 -14.28463 -14.24833 -14.13844 -13.76370 -13.69069 -13.49565 -13.35919 -12.94050 -12.84556 -12.47450 -12.33685 -11.97088 -11.69888 -11.46879 -11.28434 -10.85941 -10.65140 -10.62608 -10.56531 -10.09777 -10.03715 -9.75526 -9.63304 -9.48341 -9.07740 -8.82165 -8.70482 -8.36380 -6.88176 -5.70482 -2.98607 1.64427 2.16959 2.86340 3.22647 3.46879 3.52231 3.52704 3.54622 4.62245 4.64142 4.78981 4.88537 5.10513 5.13880 5.16382 5.17337 5.41703 5.45101 5.55363 5.60205 5.62433 5.70236 5.74633 5.77363 5.90811 5.96359 5.99429 6.16036 6.36285 6.39403 6.44227 6.45770 6.53767 6.61076 6.68177 6.79938 6.84873 7.07075 7.12585 7.22087 7.56796 7.76155 8.37948 8.48498 9.59326 10.19018 10.53573 11.52463 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.044271 B = 0.002849 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.310139 B = 9825.654703 C =10044.860516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.603 5.603 3 C 0.587 3.413 4 O -0.555 6.555 5 C -0.228 4.228 6 C -0.184 4.184 7 C -0.022 4.022 8 N -0.555 5.555 9 H 0.416 0.584 10 C 0.071 3.929 11 C 0.140 3.860 12 C -0.120 4.120 13 C -0.132 4.132 14 C 0.178 3.822 15 N -0.726 5.726 16 C -0.234 4.234 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.121 4.121 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.176 0.824 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 26.314 1.668 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.334 5.334 3 C 0.377 3.623 4 O -0.435 6.435 5 C -0.238 4.238 6 C -0.208 4.208 7 C -0.150 4.150 8 N -0.150 5.150 9 H 0.253 0.747 10 C -0.065 4.065 11 C 0.038 3.962 12 C -0.160 4.160 13 C -0.173 4.173 14 C 0.068 3.932 15 N -0.366 5.366 16 C -0.365 4.365 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.160 4.160 25 C -0.157 4.157 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.670 26.283 1.576 28.410 hybrid contribution -0.135 -0.462 -0.413 0.634 sum -10.805 25.821 1.163 28.015 Atomic orbital electron populations 1.22405 0.80360 1.03682 1.01595 1.47708 1.06785 1.05778 1.73097 1.17440 0.86373 0.82855 0.75625 1.90763 1.13552 1.87439 1.51703 1.20417 0.94060 0.92874 1.16438 1.22834 0.94827 0.95594 1.07511 1.21890 0.90052 0.93451 1.09611 1.41669 1.07289 1.09814 1.56197 0.74729 1.21832 0.93857 0.88262 1.02587 1.21224 0.97983 0.81562 0.95441 1.21857 1.00635 0.96925 0.96536 1.22230 0.99676 0.93912 1.01499 1.20223 0.95656 0.86164 0.91109 1.42454 1.26067 1.06609 1.61491 1.19290 1.04012 0.89468 1.23778 0.91195 1.24738 0.97333 0.97983 1.01136 1.69672 1.16175 1.25591 1.46782 0.86145 0.77938 0.83179 0.79126 1.20607 1.21959 1.21959 1.21767 1.00091 0.94489 0.99651 1.21815 1.00639 0.96388 0.96907 0.92649 0.90937 0.89528 0.82043 0.81496 0.80688 0.88184 0.92212 0.92624 0.92472 0.91794 0.93682 0.78307 0.93637 0.92029 0.91587 0.92240 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 7.75 59.85 0.46 1.06 16 2 N -0.60 -7.97 2.76 -175.26 -0.48 -8.45 16 3 C 0.59 8.65 7.66 -12.59 -0.10 8.56 16 4 O -0.55 -10.17 16.26 5.26 0.09 -10.08 16 5 C -0.23 -2.61 6.06 -103.35 -0.63 -3.23 16 6 C -0.18 -1.56 8.82 -37.50 -0.33 -1.89 16 7 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 8 N -0.56 -3.25 5.90 -12.85 -0.08 -3.32 16 9 H 0.42 0.97 8.96 -40.82 -0.37 0.61 16 10 C 0.07 0.64 11.71 -16.84 -0.20 0.44 16 11 C 0.14 2.09 2.51 -67.93 -0.17 1.92 16 12 C -0.12 -1.83 5.20 -26.73 -0.14 -1.97 16 13 C -0.13 -2.46 5.50 -26.73 -0.15 -2.60 16 14 C 0.18 3.59 2.77 -67.93 -0.19 3.40 16 15 N -0.73 -18.52 5.12 -53.43 -0.27 -18.80 16 16 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 19 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 20 Si 0.90 22.69 29.55 -169.99 -5.02 17.67 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 C -0.12 -2.09 5.39 -26.73 -0.14 -2.23 16 25 C -0.12 -1.70 5.19 -26.73 -0.14 -1.84 16 26 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.07 0.66 6.44 -51.93 -0.33 0.32 16 28 H 0.09 0.70 4.83 -51.93 -0.25 0.45 16 29 H 0.16 1.10 4.87 -52.49 -0.26 0.84 16 30 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 31 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.10 1.74 6.90 -51.93 -0.36 1.38 16 33 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.38 10.45 7.80 -40.82 -0.32 10.13 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.83 6.67 -51.93 -0.35 0.48 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -34.99 340.84 -8.44 -43.44 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.37 Total: 8.40 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -2.16 Total: -6.01 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.11 Total: -58.55 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.99 -8.44 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963349152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.073 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds