Wall clock time and date at job start Tue Mar 31 2020 07:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99824 * 2 1 4 4 O 1.21625 * 119.99913 * 181.13890 * 3 2 1 5 5 C 1.47264 * 120.00238 * 1.14573 * 3 2 1 6 6 C 1.46688 * 126.94158 * 348.67292 * 5 3 2 7 7 C 1.34482 * 106.33479 * 180.11983 * 6 5 3 8 8 N 1.36452 * 108.85358 * 359.60101 * 7 6 5 9 9 H 0.97004 * 124.84813 * 180.26603 * 8 7 6 10 10 C 1.34651 * 110.30024 * 0.26545 * 8 7 6 11 11 C 1.46500 * 120.00202 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47028 * 59.99765 * 11 2 1 13 13 C 1.53002 * 109.46816 * 180.02562 * 12 11 2 14 14 C 1.53005 * 109.47201 * 60.00237 * 13 12 11 15 15 N 1.46500 * 109.46897 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00024 * 274.99386 * 15 14 13 17 17 H 1.08001 * 119.99892 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99723 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00449 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99642 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47041 * 120.00293 * 20 18 16 23 23 H 1.48501 * 109.47100 * 240.00410 * 20 18 16 24 24 C 1.53001 * 109.47042 * 299.99625 * 14 13 12 25 25 C 1.53002 * 109.46816 * 60.00140 * 24 14 13 26 26 H 1.09000 * 109.47338 * 83.47640 * 1 2 3 27 27 H 1.09001 * 109.47035 * 203.47063 * 1 2 3 28 28 H 1.09001 * 109.47280 * 323.47873 * 1 2 3 29 29 H 1.08001 * 126.83395 * 359.97438 * 6 5 3 30 30 H 1.07998 * 125.57813 * 179.87141 * 7 6 5 31 31 H 1.07997 * 125.80724 * 180.02562 * 10 8 7 32 32 H 1.08992 * 109.47249 * 179.97438 * 11 2 1 33 33 H 1.08998 * 109.47438 * 299.99792 * 12 11 2 34 34 H 1.08998 * 109.47389 * 60.00649 * 12 11 2 35 35 H 1.09000 * 109.47458 * 299.99768 * 13 12 11 36 36 H 1.09003 * 109.47087 * 179.97438 * 13 12 11 37 37 H 1.08992 * 109.47395 * 59.99742 * 14 13 12 38 38 H 0.96999 * 119.99983 * 95.00237 * 15 14 13 39 39 H 0.97005 * 120.00445 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47438 * 300.00589 * 24 14 13 41 41 H 1.08998 * 109.47389 * 179.97438 * 24 14 13 42 42 H 1.09003 * 109.47087 * 180.02562 * 25 24 14 43 43 H 1.09000 * 109.47458 * 60.00232 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3549 1.1673 -0.0209 5 6 1.4028 2.4424 0.0255 6 6 -0.0373 2.6333 -0.1780 7 6 -0.2626 3.9548 -0.0705 8 7 0.9198 4.5839 0.1904 9 1 1.0230 5.5403 0.3153 10 6 1.9227 3.6874 0.2499 11 6 2.1976 -1.2687 -0.0006 12 6 1.8279 -2.0705 -1.2502 13 6 2.5925 -3.3957 -1.2504 14 6 2.2223 -4.1983 -0.0014 15 7 2.9540 -5.4675 -0.0020 16 6 2.4543 -6.5456 -0.6826 17 1 1.5210 -6.4601 -1.2193 18 6 3.1479 -7.7480 -0.6836 19 7 4.2855 -7.8521 -0.0300 20 14 2.4665 -9.2185 -1.6126 21 1 1.1837 -8.8438 -2.2602 22 1 3.4397 -9.6419 -2.6513 23 1 2.2348 -10.3384 -0.6654 24 6 2.5920 -3.3966 1.2481 25 6 1.8274 -2.0713 1.2484 26 1 -0.3634 0.1168 -1.0210 27 1 -0.3633 -0.9427 0.4093 28 1 -0.3634 0.8259 0.6116 29 1 -0.7705 1.8656 -0.3770 30 1 -1.2231 4.4385 -0.1698 31 1 2.9612 3.9129 0.4424 32 1 3.2691 -1.0695 -0.0009 33 1 0.7563 -2.2697 -1.2502 34 1 2.0913 -1.4986 -2.1399 35 1 3.6642 -3.1970 -1.2501 36 1 2.3288 -3.9672 -2.1404 37 1 1.1507 -4.3972 -0.0017 38 1 3.7924 -5.5443 0.4798 39 1 4.7700 -8.6925 -0.0303 40 1 3.6637 -3.1977 1.2484 41 1 2.3279 -3.9681 2.1379 42 1 2.0910 -1.4999 2.1384 43 1 0.7557 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963349152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:04 Heat of formation + Delta-G solvation = 6.048395 kcal Electronic energy + Delta-G solvation = -23242.790021 eV Core-core repulsion = 19902.189089 eV Total energy + Delta-G solvation = -3340.600931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09204 -40.74745 -39.07162 -36.72639 -35.14349 -32.94759 -31.70688 -31.66884 -30.05720 -29.12497 -27.74244 -25.74065 -23.94478 -23.53809 -21.86023 -21.66564 -20.57428 -20.01075 -19.10427 -18.96497 -17.42639 -17.01901 -16.64718 -16.30165 -15.75622 -15.36863 -15.13678 -14.91116 -14.87182 -14.72332 -14.42956 -14.08033 -13.97245 -13.89447 -13.39938 -13.15045 -13.08003 -13.02720 -12.82564 -12.37008 -12.18040 -12.14090 -12.03878 -11.94887 -11.62164 -11.47388 -11.11787 -10.85518 -10.78019 -9.74006 -9.57229 -9.16522 -8.98300 -7.91609 -5.20069 0.82952 1.48021 1.49179 1.59056 1.62646 2.06663 2.53530 2.58064 2.59312 3.41378 3.69676 3.85024 3.90973 4.02418 4.17074 4.26982 4.37566 4.37987 4.41898 4.46639 4.55983 4.57802 4.60934 4.64459 4.80895 4.85271 4.93668 5.01686 5.06795 5.11180 5.15246 5.19274 5.24597 5.28859 5.51185 5.55934 5.64323 5.69400 5.82792 6.03287 6.30885 6.55065 6.74430 7.32935 7.36023 8.13315 8.36228 9.32578 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.044271 B = 0.002849 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.310139 B = 9825.654703 C =10044.860516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.601 5.601 3 C 0.576 3.424 4 O -0.608 6.608 5 C -0.265 4.265 6 C -0.200 4.200 7 C -0.005 4.005 8 N -0.538 5.538 9 H 0.435 0.565 10 C 0.067 3.933 11 C 0.145 3.855 12 C -0.106 4.106 13 C -0.123 4.123 14 C 0.175 3.825 15 N -0.740 5.740 16 C -0.233 4.233 17 H 0.078 0.922 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.972 3.028 21 H -0.263 1.263 22 H -0.297 1.297 23 H -0.294 1.294 24 C -0.113 4.113 25 C -0.105 4.105 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.177 0.823 30 H 0.207 0.793 31 H 0.177 0.823 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.370 0.630 39 H 0.249 0.751 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 28.392 1.391 31.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.331 5.331 3 C 0.369 3.631 4 O -0.491 6.491 5 C -0.275 4.275 6 C -0.223 4.223 7 C -0.134 4.134 8 N -0.133 5.133 9 H 0.275 0.725 10 C -0.071 4.071 11 C 0.041 3.959 12 C -0.145 4.145 13 C -0.164 4.164 14 C 0.067 3.933 15 N -0.379 5.379 16 C -0.365 4.365 17 H 0.096 0.904 18 C -0.273 4.273 19 N -0.625 5.625 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.224 1.224 23 H -0.221 1.221 24 C -0.152 4.152 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.194 0.806 30 H 0.224 0.776 31 H 0.194 0.806 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.201 0.799 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.189 28.429 1.290 31.800 hybrid contribution 0.901 -0.966 -0.322 1.360 sum -13.288 27.463 0.968 30.524 Atomic orbital electron populations 1.22696 0.77720 1.05000 1.03080 1.47727 1.08304 1.04566 1.72470 1.18059 0.86040 0.84265 0.74737 1.90722 1.15863 1.88226 1.54338 1.20374 0.95830 0.91944 1.19400 1.23023 0.93430 0.97208 1.08597 1.22495 0.91143 0.92868 1.06852 1.41703 1.06575 1.10526 1.54522 0.72533 1.21909 0.94679 0.88399 1.02142 1.20950 0.96707 0.82697 0.95511 1.21702 1.01249 0.94751 0.96783 1.22036 0.99024 0.95445 0.99886 1.20447 0.95218 0.84653 0.92950 1.42705 1.25971 1.08116 1.61132 1.19684 1.03854 0.90108 1.22806 0.90410 1.25580 0.97954 1.00981 1.02820 1.69837 1.17761 1.25987 1.48877 0.85082 0.77727 0.79483 0.77564 1.18761 1.22413 1.22100 1.21647 0.99788 0.95684 0.98059 1.21695 1.01410 0.94388 0.96879 0.91177 0.90036 0.87695 0.80578 0.77627 0.80557 0.91421 0.89926 0.92606 0.94421 0.93350 0.93118 0.79858 0.94188 0.93395 0.91751 0.91524 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 7.75 127.77 0.99 1.89 16 2 N -0.60 -15.27 2.76 -826.65 -2.28 -17.55 16 3 C 0.58 17.08 7.66 86.62 0.66 17.75 16 4 O -0.61 -23.37 16.26 -4.11 -0.07 -23.43 16 5 C -0.27 -5.76 6.06 -19.04 -0.12 -5.87 16 6 C -0.20 -2.76 8.82 23.62 0.21 -2.55 16 7 C -0.01 -0.04 11.89 83.11 0.99 0.94 16 8 N -0.54 -4.62 5.90 -194.56 -1.15 -5.76 16 9 H 0.43 0.53 8.96 -92.71 -0.83 -0.30 16 10 C 0.07 1.13 11.71 83.92 0.98 2.11 16 11 C 0.14 4.28 2.51 44.99 0.11 4.40 16 12 C -0.11 -3.12 5.20 30.60 0.16 -2.96 16 13 C -0.12 -4.63 5.50 30.60 0.17 -4.46 16 14 C 0.18 7.06 2.77 44.99 0.12 7.18 16 15 N -0.74 -38.53 5.12 -322.94 -1.65 -40.18 16 16 C -0.23 -13.12 9.93 84.03 0.83 -12.29 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 19 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 20 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 24 C -0.11 -3.90 5.39 30.60 0.17 -3.74 16 25 C -0.11 -2.88 5.19 30.60 0.16 -2.72 16 26 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 27 H 0.08 1.17 6.44 -2.39 -0.02 1.15 16 28 H 0.11 1.34 4.83 -2.39 -0.01 1.33 16 29 H 0.18 1.73 4.87 -2.91 -0.01 1.72 16 30 H 0.21 0.07 8.06 -2.91 -0.02 0.05 16 31 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.07 2.47 6.90 -2.39 -0.02 2.45 16 33 H 0.08 2.09 7.67 -2.39 -0.02 2.07 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 38 H 0.37 20.93 7.80 -92.71 -0.72 20.21 16 39 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.09 2.01 6.67 -2.39 -0.02 1.99 16 Total: -1.00 -78.72 340.84 2.55 -76.17 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.52 Total: 27.42 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.91 Total: -4.65 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -4.80 Total: -124.54 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -78.72 2.55 -76.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963349152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.219 kcal (2) G-P(sol) polarization free energy of solvation -78.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds