Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46669 * 2 1 4 4 C 1.35532 * 125.67849 * 261.23967 * 3 2 1 5 5 C 1.35458 * 108.87369 * 179.97438 * 4 3 2 6 6 C 1.39839 * 107.85930 * 0.02562 * 5 4 3 7 7 C 1.37653 * 125.67782 * 80.93768 * 3 2 1 8 8 C 1.46676 * 126.23235 * 0.02562 * 7 3 2 9 9 O 1.21699 * 119.99984 * 5.36858 * 8 7 3 10 10 N 1.34780 * 120.00199 * 185.36750 * 8 7 3 11 11 C 1.46493 * 120.00127 * 185.15666 * 10 8 7 12 12 H 1.09001 * 109.47492 * 34.99463 * 11 10 8 13 13 C 1.53006 * 109.47121 * 274.99814 * 11 10 8 14 14 C 1.53002 * 109.47244 * 155.00122 * 11 10 8 15 15 C 1.53942 * 113.73668 * 276.67415 * 14 11 10 16 16 N 1.47591 * 86.11564 * 222.04660 * 15 14 11 17 17 C 1.36934 * 134.49391 * 204.64517 * 16 15 14 18 18 H 1.08005 * 119.99760 * 174.40217 * 17 16 15 19 19 C 1.38811 * 119.99775 * 354.40277 * 17 16 15 20 20 N 1.31617 * 120.00211 * 5.02476 * 19 17 16 21 21 Si 1.86803 * 119.99563 * 185.02646 * 19 17 16 22 22 H 1.48503 * 109.47035 * 94.99572 * 21 19 17 23 23 H 1.48506 * 109.47075 * 214.99203 * 21 19 17 24 24 H 1.48497 * 109.47508 * 334.99420 * 21 19 17 25 25 C 1.47579 * 91.01217 * 24.63938 * 16 15 14 26 26 H 1.09000 * 109.47230 * 299.99978 * 1 2 3 27 27 H 1.09003 * 109.47618 * 59.99990 * 1 2 3 28 28 H 1.09007 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47323 * 240.00482 * 2 1 3 30 30 H 1.08997 * 109.47226 * 119.99861 * 2 1 3 31 31 H 1.08005 * 125.56581 * 359.97438 * 4 3 2 32 32 H 1.07995 * 126.06851 * 180.02562 * 5 4 3 33 33 H 1.08005 * 126.45188 * 179.97438 * 6 5 4 34 34 H 0.97000 * 119.99758 * 5.15726 * 10 8 7 35 35 H 1.09002 * 109.47151 * 60.00094 * 13 11 10 36 36 H 1.08994 * 109.47317 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47525 * 300.00389 * 13 11 10 38 38 H 1.08995 * 112.94067 * 48.40869 * 14 11 10 39 39 H 1.09000 * 113.77134 * 336.34315 * 15 14 11 40 40 H 1.08995 * 113.77093 * 107.75064 * 15 14 11 41 41 H 0.97001 * 119.99695 * 179.97438 * 20 19 17 42 42 H 1.08996 * 113.77308 * 221.05912 * 25 16 15 43 43 H 1.09004 * 113.76604 * 89.66242 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.4397 2.0707 -1.0881 5 6 2.8151 3.3134 -0.7011 6 6 2.6231 3.4085 0.6808 7 6 2.1197 2.1969 1.1042 8 6 1.7614 1.8405 2.4812 9 8 1.4208 0.7026 2.7462 10 7 1.8093 2.7732 3.4529 11 6 1.5615 2.3931 4.8458 12 1 1.9584 1.3941 5.0260 13 6 0.0556 2.4000 5.1163 14 6 2.2515 3.3917 5.7774 15 6 3.7422 3.0896 6.0150 16 7 3.4812 3.4230 7.4289 17 6 4.2534 3.8686 8.4681 18 1 3.7934 4.1277 9.4103 19 6 5.6275 3.9872 8.3106 20 7 6.1766 3.7668 7.1350 21 14 6.6971 4.4597 9.7674 22 1 7.2332 3.2313 10.4069 23 1 7.8240 5.3065 9.3001 24 1 5.8847 5.2168 10.7533 25 6 2.0535 3.0833 7.2726 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.4712 1.6912 -2.0988 32 1 3.1951 4.0923 -1.3454 33 1 2.8267 4.2703 1.2991 34 1 2.0078 3.6961 3.2300 35 1 -0.4360 1.6886 4.4526 36 1 -0.1288 2.1168 6.1525 37 1 -0.3414 3.3990 4.9361 38 1 2.0489 4.4295 5.5128 39 1 4.0103 2.0457 5.8521 40 1 4.4164 3.7861 5.5167 41 1 7.1367 3.8501 7.0249 42 1 1.3795 3.7747 7.7783 43 1 1.8256 2.0375 7.4791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970881592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = 61.702594 kcal Electronic energy + Delta-G solvation = -23339.546433 eV Core-core repulsion = 20001.358849 eV Total energy + Delta-G solvation = -3338.187584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41900 -39.29926 -37.86090 -34.94627 -34.08114 -32.20541 -30.84664 -29.39172 -28.75804 -27.48448 -24.89182 -24.06218 -23.67970 -22.64361 -21.05813 -20.34105 -19.83490 -18.75614 -17.68096 -16.71215 -15.98934 -15.74538 -15.32827 -14.84893 -14.63906 -14.33713 -13.97812 -13.80763 -13.76595 -13.44772 -13.00870 -12.53791 -12.48720 -12.36249 -12.31108 -12.11892 -11.97354 -11.64380 -11.38571 -11.27173 -11.26173 -10.88264 -10.70979 -10.32754 -9.97269 -9.74959 -9.69403 -9.37314 -8.81900 -8.78412 -8.76930 -8.20798 -6.83794 -5.75279 -3.06685 1.52774 2.62897 2.72878 3.40761 3.45441 3.47487 3.47944 3.55449 4.47615 4.56564 4.81021 4.88552 4.91557 5.12607 5.15423 5.29361 5.29483 5.31857 5.36249 5.51496 5.56110 5.67252 5.69287 5.83103 5.93110 5.97444 6.03587 6.06880 6.15476 6.27439 6.39087 6.44177 6.61356 6.67499 6.73087 6.87322 6.97233 7.17970 7.27012 7.38262 7.59813 7.73677 8.00689 8.39178 9.07152 9.73318 10.63578 11.42157 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.003474 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.457847 B = 8058.522064 C = 8758.938530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.008 3.992 5 C -0.208 4.208 6 C -0.141 4.141 7 C -0.046 4.046 8 C 0.587 3.413 9 O -0.554 6.554 10 N -0.705 5.705 11 C 0.155 3.845 12 H 0.087 0.913 13 C -0.158 4.158 14 C -0.147 4.147 15 C 0.173 3.827 16 N -0.613 5.613 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.130 3.870 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.401 0.599 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -3.396 -17.127 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.082 5.082 4 C -0.127 4.127 5 C -0.233 4.233 6 C -0.168 4.168 7 C -0.160 4.160 8 C 0.375 3.625 9 O -0.434 6.434 10 N -0.355 5.355 11 C 0.050 3.950 12 H 0.105 0.895 13 C -0.216 4.216 14 C -0.167 4.167 15 C 0.048 3.952 16 N -0.339 5.339 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.003 3.997 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.182 0.818 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.236 0.764 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.653 -4.490 -16.706 20.858 hybrid contribution 0.890 0.597 0.571 1.214 sum -10.763 -3.892 -16.136 19.783 Atomic orbital electron populations 1.22058 0.94145 1.02928 1.02800 1.22007 0.95924 0.79729 1.04739 1.44059 1.46604 1.11447 1.06079 1.21968 1.05397 0.93502 0.91800 1.20805 1.09738 0.97267 0.95452 1.21404 1.03443 0.96264 0.95664 1.20170 1.14527 0.92744 0.88538 1.16985 0.77199 0.85004 0.83324 1.90761 1.49013 1.20210 1.83388 1.45768 1.71210 1.11430 1.07065 1.21102 0.95088 0.99989 0.78795 0.89520 1.22132 0.95871 1.01609 1.02018 1.23846 0.99779 0.98248 0.94860 1.22213 0.90334 0.97742 0.84953 1.45933 1.03809 1.75626 1.08500 1.19030 0.88362 1.36280 0.91540 0.90236 1.24809 0.96360 1.02104 0.97098 1.69836 1.10388 1.55037 1.21286 0.86144 0.80352 0.77787 0.81772 1.21661 1.21706 1.20565 1.22501 0.88543 0.97270 0.91362 0.91350 0.92573 0.90852 0.89557 0.87683 0.81786 0.84187 0.83787 0.76390 0.92738 0.91425 0.92732 0.89324 0.95561 0.91293 0.93658 0.93774 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.16 37.16 0.38 -1.13 16 2 C 0.10 0.98 6.11 -4.04 -0.02 0.95 16 3 N -0.41 -4.87 2.76 -112.87 -0.31 -5.18 16 4 C 0.01 0.09 11.36 -16.91 -0.19 -0.11 16 5 C -0.21 -2.24 10.81 -39.98 -0.43 -2.67 16 6 C -0.14 -1.73 10.35 -39.12 -0.40 -2.13 16 7 C -0.05 -0.64 6.88 -81.98 -0.56 -1.20 16 8 C 0.59 9.05 7.73 -12.85 -0.10 8.95 16 9 O -0.55 -9.71 13.91 5.19 0.07 -9.64 16 10 N -0.71 -10.10 5.05 -55.11 -0.28 -10.38 16 11 C 0.15 2.42 2.38 -67.93 -0.16 2.26 16 12 H 0.09 1.56 7.45 -51.93 -0.39 1.17 16 13 C -0.16 -2.14 9.29 37.16 0.35 -1.79 16 14 C -0.15 -2.65 3.50 -89.69 -0.31 -2.96 16 15 C 0.17 4.07 7.00 -2.97 -0.02 4.05 16 16 N -0.61 -15.83 3.70 -177.90 -0.66 -16.48 16 17 C -0.22 -6.37 10.70 -15.06 -0.16 -6.54 16 18 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.56 11.48 55.49 0.64 -26.92 16 21 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.13 2.62 7.56 -2.98 -0.02 2.59 16 26 H 0.07 0.81 7.58 -51.93 -0.39 0.42 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.10 1.28 6.74 -51.93 -0.35 0.93 16 31 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.14 1.53 7.49 -52.48 -0.39 1.13 16 34 H 0.40 4.99 7.55 -40.82 -0.31 4.68 16 35 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.07 0.88 7.43 -51.93 -0.39 0.49 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.03 0.66 7.96 -51.93 -0.41 0.25 16 40 H 0.07 1.78 7.31 -51.93 -0.38 1.40 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -33.50 353.84 -8.78 -42.27 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.78 Total: 3.71 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.77 Total: -0.02 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.61 Total: -58.96 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.50 -8.78 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970881592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.974 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds