Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46669 * 2 1 4 4 C 1.35532 * 125.67849 * 261.23967 * 3 2 1 5 5 C 1.35458 * 108.87369 * 179.97438 * 4 3 2 6 6 C 1.39839 * 107.85930 * 0.02562 * 5 4 3 7 7 C 1.37653 * 125.67782 * 80.93768 * 3 2 1 8 8 C 1.46676 * 126.23235 * 0.02562 * 7 3 2 9 9 O 1.21699 * 119.99984 * 5.36858 * 8 7 3 10 10 N 1.34780 * 120.00199 * 185.36750 * 8 7 3 11 11 C 1.46493 * 120.00127 * 185.15666 * 10 8 7 12 12 H 1.09001 * 109.47492 * 34.99463 * 11 10 8 13 13 C 1.53006 * 109.47121 * 274.99814 * 11 10 8 14 14 C 1.53002 * 109.47244 * 155.00122 * 11 10 8 15 15 C 1.53942 * 113.73668 * 276.67415 * 14 11 10 16 16 N 1.47591 * 86.11564 * 222.04660 * 15 14 11 17 17 C 1.36934 * 134.49391 * 204.64517 * 16 15 14 18 18 H 1.08005 * 119.99760 * 174.40217 * 17 16 15 19 19 C 1.38811 * 119.99775 * 354.40277 * 17 16 15 20 20 N 1.31617 * 120.00211 * 5.02476 * 19 17 16 21 21 Si 1.86803 * 119.99563 * 185.02646 * 19 17 16 22 22 H 1.48503 * 109.47035 * 94.99572 * 21 19 17 23 23 H 1.48506 * 109.47075 * 214.99203 * 21 19 17 24 24 H 1.48497 * 109.47508 * 334.99420 * 21 19 17 25 25 C 1.47579 * 91.01217 * 24.63938 * 16 15 14 26 26 H 1.09000 * 109.47230 * 299.99978 * 1 2 3 27 27 H 1.09003 * 109.47618 * 59.99990 * 1 2 3 28 28 H 1.09007 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47323 * 240.00482 * 2 1 3 30 30 H 1.08997 * 109.47226 * 119.99861 * 2 1 3 31 31 H 1.08005 * 125.56581 * 359.97438 * 4 3 2 32 32 H 1.07995 * 126.06851 * 180.02562 * 5 4 3 33 33 H 1.08005 * 126.45188 * 179.97438 * 6 5 4 34 34 H 0.97000 * 119.99758 * 5.15726 * 10 8 7 35 35 H 1.09002 * 109.47151 * 60.00094 * 13 11 10 36 36 H 1.08994 * 109.47317 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47525 * 300.00389 * 13 11 10 38 38 H 1.08995 * 112.94067 * 48.40869 * 14 11 10 39 39 H 1.09000 * 113.77134 * 336.34315 * 15 14 11 40 40 H 1.08995 * 113.77093 * 107.75064 * 15 14 11 41 41 H 0.97001 * 119.99695 * 179.97438 * 20 19 17 42 42 H 1.08996 * 113.77308 * 221.05912 * 25 16 15 43 43 H 1.09004 * 113.76604 * 89.66242 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.4397 2.0707 -1.0881 5 6 2.8151 3.3134 -0.7011 6 6 2.6231 3.4085 0.6808 7 6 2.1197 2.1969 1.1042 8 6 1.7614 1.8405 2.4812 9 8 1.4208 0.7026 2.7462 10 7 1.8093 2.7732 3.4529 11 6 1.5615 2.3931 4.8458 12 1 1.9584 1.3941 5.0260 13 6 0.0556 2.4000 5.1163 14 6 2.2515 3.3917 5.7774 15 6 3.7422 3.0896 6.0150 16 7 3.4812 3.4230 7.4289 17 6 4.2534 3.8686 8.4681 18 1 3.7934 4.1277 9.4103 19 6 5.6275 3.9872 8.3106 20 7 6.1766 3.7668 7.1350 21 14 6.6971 4.4597 9.7674 22 1 7.2332 3.2313 10.4069 23 1 7.8240 5.3065 9.3001 24 1 5.8847 5.2168 10.7533 25 6 2.0535 3.0833 7.2726 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 2.4712 1.6912 -2.0988 32 1 3.1951 4.0923 -1.3454 33 1 2.8267 4.2703 1.2991 34 1 2.0078 3.6961 3.2300 35 1 -0.4360 1.6886 4.4526 36 1 -0.1288 2.1168 6.1525 37 1 -0.3414 3.3990 4.9361 38 1 2.0489 4.4295 5.5128 39 1 4.0103 2.0457 5.8521 40 1 4.4164 3.7861 5.5167 41 1 7.1367 3.8501 7.0249 42 1 1.3795 3.7747 7.7783 43 1 1.8256 2.0375 7.4791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970881592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = 40.628642 kcal Electronic energy + Delta-G solvation = -23340.460269 eV Core-core repulsion = 20001.358849 eV Total energy + Delta-G solvation = -3339.101419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.32470 -40.64220 -39.39391 -36.25790 -35.01884 -34.14278 -32.17551 -30.20416 -29.84363 -29.27582 -26.61427 -25.68272 -24.55714 -23.95198 -22.36558 -21.31208 -21.20707 -20.03094 -18.80667 -18.62760 -17.28221 -16.96043 -16.76538 -16.31210 -15.76145 -15.53021 -15.45218 -15.05928 -14.80347 -14.66400 -14.47774 -14.06612 -13.47498 -13.40807 -13.30957 -13.16264 -13.08702 -13.08177 -12.88765 -12.81402 -12.70177 -12.53300 -12.12803 -11.97565 -11.73102 -11.51453 -11.24960 -10.92690 -10.86775 -10.07716 -9.65331 -9.11246 -8.91387 -7.91713 -5.24654 0.53932 1.44796 1.47126 1.55985 1.73090 1.88146 2.39038 2.47143 2.48264 3.28679 3.38929 3.69434 3.83419 3.87085 3.98135 4.12824 4.19981 4.29666 4.39756 4.48459 4.49151 4.52309 4.58716 4.74383 4.78039 4.83321 4.86695 4.89663 5.01215 5.09132 5.17179 5.21844 5.25839 5.32789 5.34112 5.48437 5.55892 5.66019 5.87996 5.93392 6.06757 6.39698 6.60431 6.91422 7.23966 7.60657 8.57117 9.25722 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.003474 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.457847 B = 8058.522064 C = 8758.938530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.415 5.415 4 C 0.024 3.976 5 C -0.222 4.222 6 C -0.143 4.143 7 C -0.086 4.086 8 C 0.583 3.417 9 O -0.583 6.583 10 N -0.702 5.702 11 C 0.165 3.835 12 H 0.059 0.941 13 C -0.148 4.148 14 C -0.110 4.110 15 C 0.170 3.830 16 N -0.644 5.644 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.264 1.264 25 C 0.131 3.869 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.204 0.796 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.411 0.589 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.002 0.998 40 H 0.038 0.962 41 H 0.248 0.752 42 H 0.066 0.934 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 -2.755 -18.321 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 N -0.089 5.089 4 C -0.112 4.112 5 C -0.246 4.246 6 C -0.170 4.170 7 C -0.198 4.198 8 C 0.373 3.627 9 O -0.466 6.466 10 N -0.352 5.352 11 C 0.060 3.940 12 H 0.077 0.923 13 C -0.206 4.206 14 C -0.129 4.129 15 C 0.044 3.956 16 N -0.370 5.370 17 C -0.365 4.365 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.188 1.188 25 C 0.006 3.994 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.095 0.905 31 H 0.221 0.779 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.247 0.753 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.020 0.980 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.915 -3.835 -17.889 22.394 hybrid contribution 1.255 0.371 0.864 1.568 sum -11.660 -3.463 -17.024 20.923 Atomic orbital electron populations 1.21989 0.93612 1.03694 1.01818 1.22115 0.96373 0.79131 1.05068 1.44293 1.46592 1.11927 1.06057 1.22671 1.02754 0.93024 0.92749 1.21168 1.10050 0.98384 0.94949 1.21697 1.02462 0.95959 0.96842 1.20056 1.17341 0.94143 0.88292 1.17301 0.76620 0.84566 0.84259 1.90735 1.50513 1.21331 1.84008 1.45657 1.71219 1.11919 1.06403 1.20831 0.96386 0.97635 0.79165 0.92260 1.22038 0.93531 1.02656 1.02387 1.23467 0.95344 0.99627 0.94497 1.22085 0.93530 0.95468 0.84485 1.46356 1.06171 1.75794 1.08729 1.19474 0.89113 1.35519 0.92415 0.89590 1.25673 0.97777 1.02971 0.99683 1.70032 1.10094 1.56786 1.23287 0.85072 0.78337 0.77284 0.78743 1.21773 1.22012 1.18826 1.22690 0.85961 0.98152 0.92636 0.94473 0.91194 0.89264 0.86061 0.90459 0.77917 0.81964 0.82985 0.75271 0.93252 0.90585 0.90831 0.87587 0.98028 0.94307 0.94328 0.91536 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.16 71.98 0.73 -1.98 16 2 C 0.09 1.80 6.11 86.38 0.53 2.32 16 3 N -0.42 -9.40 2.76 -511.01 -1.41 -10.81 16 4 C 0.02 0.41 11.36 83.48 0.95 1.36 16 5 C -0.22 -4.26 10.81 22.01 0.24 -4.03 16 6 C -0.14 -3.37 10.35 22.57 0.23 -3.13 16 7 C -0.09 -2.34 6.88 40.35 0.28 -2.07 16 8 C 0.58 18.46 7.73 86.45 0.67 19.12 16 9 O -0.58 -21.35 13.91 -4.35 -0.06 -21.41 16 10 N -0.70 -20.28 5.05 -446.49 -2.26 -22.53 16 11 C 0.17 5.15 2.38 45.00 0.11 5.26 16 12 H 0.06 2.21 7.45 -2.39 -0.02 2.19 16 13 C -0.15 -3.79 9.29 71.98 0.67 -3.12 16 14 C -0.11 -3.89 3.50 -10.13 -0.04 -3.93 16 15 C 0.17 8.28 7.00 86.48 0.61 8.89 16 16 N -0.64 -33.59 3.70 -716.75 -2.65 -36.24 16 17 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 18 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.95 -58.96 11.48 21.65 0.25 -58.71 16 21 Si 0.98 46.43 29.56 68.60 2.03 48.46 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.13 5.13 7.56 86.48 0.65 5.78 16 26 H 0.04 0.89 7.58 -2.39 -0.02 0.87 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.12 1.42 8.11 -2.38 -0.02 1.41 16 30 H 0.08 1.93 6.74 -2.39 -0.02 1.92 16 31 H 0.20 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.15 3.13 7.49 -2.91 -0.02 3.11 16 34 H 0.41 10.12 7.55 -92.71 -0.70 9.42 16 35 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 36 H 0.08 1.82 7.43 -2.39 -0.02 1.80 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.00 0.10 7.96 -2.39 -0.02 0.08 16 40 H 0.04 2.10 7.31 -2.39 -0.02 2.08 16 41 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.04 1.65 8.06 -2.38 -0.02 1.63 16 Total: -1.00 -75.11 353.84 3.19 -71.92 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.30 Total: 20.96 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.99 Total: 8.37 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -6.07 Total: -128.29 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.11 3.19 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970881592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.551 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds