Wall clock time and date at job start Tue Mar 31 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47117 * 2 1 4 4 C 1.35533 * 125.67904 * 263.40507 * 3 2 1 5 5 C 1.35460 * 108.87001 * 180.26822 * 4 3 2 6 6 C 1.39835 * 107.86440 * 359.72992 * 5 4 3 7 7 C 1.37655 * 125.67510 * 83.20828 * 3 2 1 8 8 C 1.46676 * 126.23281 * 359.97438 * 7 3 2 9 9 O 1.21699 * 120.00248 * 4.74634 * 8 7 3 10 10 N 1.34782 * 119.99918 * 184.46494 * 8 7 3 11 11 C 1.46495 * 120.00023 * 175.27954 * 10 8 7 12 12 H 1.09007 * 109.47111 * 325.00166 * 11 10 8 13 13 C 1.53002 * 109.47471 * 84.99700 * 11 10 8 14 14 C 1.52997 * 109.47259 * 205.00016 * 11 10 8 15 15 C 1.53942 * 113.74408 * 161.82270 * 14 11 10 16 16 N 1.47814 * 86.03847 * 222.08695 * 15 14 11 17 17 C 1.36940 * 134.45834 * 204.64793 * 16 15 14 18 18 H 1.07998 * 120.00260 * 179.86296 * 17 16 15 19 19 C 1.38813 * 119.99614 * 359.86367 * 17 16 15 20 20 N 1.31612 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46904 * 90.00106 * 21 19 17 23 23 H 1.48494 * 109.47307 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.47416 * 330.00366 * 21 19 17 25 25 C 1.47574 * 91.04891 * 24.54865 * 16 15 14 26 26 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46759 * 299.99585 * 1 2 3 28 28 H 1.08994 * 109.47436 * 59.99784 * 1 2 3 29 29 H 1.09003 * 109.46759 * 240.00415 * 2 1 3 30 30 H 1.08999 * 109.47198 * 120.00629 * 2 1 3 31 31 H 1.08000 * 125.56540 * 359.97438 * 4 3 2 32 32 H 1.07999 * 126.06532 * 179.71244 * 5 4 3 33 33 H 1.07997 * 126.45654 * 180.02562 * 6 5 4 34 34 H 0.97003 * 119.99929 * 355.27304 * 10 8 7 35 35 H 1.08999 * 109.46616 * 55.03868 * 13 11 10 36 36 H 1.08994 * 109.47404 * 175.03951 * 13 11 10 37 37 H 1.09001 * 109.46968 * 295.04174 * 13 11 10 38 38 H 1.08996 * 112.94431 * 293.41739 * 14 11 10 39 39 H 1.08998 * 113.77091 * 336.35131 * 15 14 11 40 40 H 1.09002 * 113.76900 * 107.74641 * 15 14 11 41 41 H 0.97005 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.09006 * 113.77075 * 221.14872 * 25 16 15 43 43 H 1.09003 * 113.86964 * 89.77234 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4011 2.0843 -1.0936 5 6 2.7965 3.3199 -0.7038 6 6 2.6515 3.3985 0.6848 7 6 2.1613 2.1821 1.1104 8 6 1.8535 1.8078 2.4948 9 8 1.5108 0.6696 2.7556 10 7 1.9558 2.7230 3.4789 11 6 1.5499 2.3793 4.8439 12 1 0.6935 1.7057 4.8096 13 6 2.7115 1.6909 5.5634 14 6 1.1662 3.6539 5.5982 15 6 0.3202 3.3975 6.8585 16 7 -0.4840 4.5616 6.4307 17 6 -1.2849 5.4640 7.0783 18 1 -1.7751 6.2484 6.5208 19 6 -1.4667 5.3706 8.4513 20 7 -0.8697 4.4144 9.1306 21 14 -2.5587 6.6021 9.3348 22 1 -3.9536 6.0937 9.3658 23 1 -2.0695 6.7900 10.7242 24 1 -2.5212 7.9014 8.6168 25 6 -0.0753 4.3623 5.0268 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3964 1.7176 -2.1095 32 1 3.1596 4.1048 -1.3507 33 1 2.8801 4.2514 1.3066 34 1 2.2982 3.6093 3.2834 35 1 3.5944 2.3287 5.5207 36 1 2.4408 1.5144 6.6044 37 1 2.9270 0.7392 5.0777 38 1 2.0129 4.3195 5.7660 39 1 -0.2259 2.4544 6.8367 40 1 0.8621 3.5551 7.7910 41 1 -0.9964 4.3493 10.0902 42 1 0.1514 5.2890 4.4994 43 1 -0.7369 3.7037 4.4640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970881593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:45 Heat of formation + Delta-G solvation = 61.366352 kcal Electronic energy + Delta-G solvation = -23325.688812 eV Core-core repulsion = 19987.486648 eV Total energy + Delta-G solvation = -3338.202165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47594 -39.33179 -37.84053 -34.96570 -34.10896 -32.17117 -30.92236 -29.42779 -28.81129 -27.44517 -24.83400 -24.12012 -23.71382 -22.65878 -21.09011 -20.36123 -19.82222 -18.83400 -17.74832 -16.75288 -16.03810 -15.67420 -15.34981 -14.78422 -14.71452 -14.23979 -14.10872 -13.87275 -13.80684 -13.51465 -13.09070 -12.60119 -12.46128 -12.38523 -12.25151 -12.10032 -11.99348 -11.56775 -11.38052 -11.35309 -11.19501 -10.86969 -10.64247 -10.32935 -10.06717 -9.79382 -9.64449 -9.39882 -8.87035 -8.85195 -8.76837 -8.26625 -6.85081 -5.74696 -3.06559 1.47198 2.57055 2.67140 3.40579 3.44273 3.45523 3.47400 3.48924 4.47252 4.53580 4.77295 4.85454 4.88486 5.10954 5.15388 5.22379 5.25000 5.28475 5.43040 5.50813 5.56852 5.64471 5.68484 5.84765 5.95145 5.96283 6.03166 6.09900 6.11903 6.30465 6.39992 6.49068 6.61123 6.64163 6.68255 6.85726 6.91415 7.12220 7.24633 7.38843 7.58098 7.69752 8.00440 8.34889 9.06977 9.73207 10.62674 11.42614 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.003257 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.232477 B = 8595.374327 C = 8806.175361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.408 5.408 4 C 0.009 3.991 5 C -0.209 4.209 6 C -0.144 4.144 7 C -0.045 4.045 8 C 0.586 3.414 9 O -0.553 6.553 10 N -0.706 5.706 11 C 0.155 3.845 12 H 0.086 0.914 13 C -0.158 4.158 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.612 5.612 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.400 0.600 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.041 0.959 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -6.638 -19.451 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.081 5.081 4 C -0.127 4.127 5 C -0.233 4.233 6 C -0.170 4.170 7 C -0.159 4.159 8 C 0.373 3.627 9 O -0.432 6.432 10 N -0.356 5.356 11 C 0.050 3.950 12 H 0.105 0.895 13 C -0.217 4.217 14 C -0.167 4.167 15 C 0.050 3.950 16 N -0.338 5.338 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.000 4.000 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.182 0.818 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.235 0.765 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.597 -7.672 -18.918 22.151 hybrid contribution -0.565 1.055 0.278 1.229 sum 8.032 -6.617 -18.641 21.349 Atomic orbital electron populations 1.22070 0.93993 1.03036 1.02990 1.22032 0.96072 0.79628 1.04712 1.44080 1.46860 1.11584 1.05575 1.21973 1.05604 0.93404 0.91676 1.20799 1.09817 0.97394 0.95271 1.21369 1.04006 0.96025 0.95619 1.20193 1.14501 0.92936 0.88285 1.17003 0.77328 0.85023 0.83321 1.90768 1.48969 1.19437 1.84073 1.45815 1.65436 1.15672 1.08640 1.21125 0.97384 0.97354 0.79097 0.89548 1.22115 0.98138 1.00317 1.01089 1.23862 0.98206 0.95107 0.99554 1.22228 0.89045 0.89658 0.94059 1.45985 1.55942 1.30545 1.01360 1.19032 1.20964 1.04957 0.90093 0.90311 1.24773 1.00723 0.98754 0.96215 1.69805 1.46607 1.33598 1.06867 0.86130 0.80109 0.80500 0.79092 1.21659 1.21630 1.20633 1.22528 0.92025 0.96454 0.89031 0.90773 0.91269 0.92476 0.89603 0.87588 0.81776 0.84204 0.83903 0.76506 0.92757 0.91044 0.92717 0.89243 0.95448 0.90677 0.93651 0.94079 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.23 37.16 0.38 -1.20 16 2 C 0.10 0.94 6.14 -4.04 -0.02 0.91 16 3 N -0.41 -4.62 2.76 -112.87 -0.31 -4.93 16 4 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 5 C -0.21 -2.07 10.81 -39.98 -0.43 -2.50 16 6 C -0.14 -1.61 10.35 -39.12 -0.41 -2.02 16 7 C -0.05 -0.59 6.89 -81.98 -0.56 -1.15 16 8 C 0.59 8.65 7.73 -12.85 -0.10 8.55 16 9 O -0.55 -9.48 14.21 5.19 0.07 -9.40 16 10 N -0.71 -9.66 4.93 -55.11 -0.27 -9.93 16 11 C 0.15 2.42 2.25 -67.93 -0.15 2.26 16 12 H 0.09 1.54 7.56 -51.93 -0.39 1.15 16 13 C -0.16 -2.26 9.46 37.16 0.35 -1.91 16 14 C -0.15 -2.65 3.35 -89.70 -0.30 -2.95 16 15 C 0.18 4.09 6.90 -2.84 -0.02 4.07 16 16 N -0.61 -15.82 3.70 -177.70 -0.66 -16.48 16 17 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.42 11.39 55.49 0.63 -26.79 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C 0.13 2.57 8.37 -2.97 -0.02 2.54 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.11 1.22 6.62 -51.93 -0.34 0.87 16 31 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 1.33 7.45 -52.49 -0.39 0.93 16 34 H 0.40 4.65 7.50 -40.82 -0.31 4.34 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 40 H 0.07 1.92 7.17 -51.93 -0.37 1.54 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -33.20 355.40 -8.76 -41.96 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.81 Total: 3.26 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.74 Total: -0.32 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.61 Total: -58.13 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.20 -8.76 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970881593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.323 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds