Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47117 * 2 1 4 4 C 1.35533 * 125.67904 * 263.40507 * 3 2 1 5 5 C 1.35460 * 108.87001 * 180.26822 * 4 3 2 6 6 C 1.39835 * 107.86440 * 359.72992 * 5 4 3 7 7 C 1.37655 * 125.67510 * 83.20828 * 3 2 1 8 8 C 1.46676 * 126.23281 * 359.97438 * 7 3 2 9 9 O 1.21699 * 120.00248 * 4.74634 * 8 7 3 10 10 N 1.34782 * 119.99918 * 184.46494 * 8 7 3 11 11 C 1.46495 * 120.00023 * 175.27954 * 10 8 7 12 12 H 1.09007 * 109.47111 * 325.00166 * 11 10 8 13 13 C 1.53002 * 109.47471 * 84.99700 * 11 10 8 14 14 C 1.52997 * 109.47259 * 205.00016 * 11 10 8 15 15 C 1.53942 * 113.74408 * 161.82270 * 14 11 10 16 16 N 1.47814 * 86.03847 * 222.08695 * 15 14 11 17 17 C 1.36940 * 134.45834 * 204.64793 * 16 15 14 18 18 H 1.07998 * 120.00260 * 179.86296 * 17 16 15 19 19 C 1.38813 * 119.99614 * 359.86367 * 17 16 15 20 20 N 1.31612 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46904 * 90.00106 * 21 19 17 23 23 H 1.48494 * 109.47307 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.47416 * 330.00366 * 21 19 17 25 25 C 1.47574 * 91.04891 * 24.54865 * 16 15 14 26 26 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46759 * 299.99585 * 1 2 3 28 28 H 1.08994 * 109.47436 * 59.99784 * 1 2 3 29 29 H 1.09003 * 109.46759 * 240.00415 * 2 1 3 30 30 H 1.08999 * 109.47198 * 120.00629 * 2 1 3 31 31 H 1.08000 * 125.56540 * 359.97438 * 4 3 2 32 32 H 1.07999 * 126.06532 * 179.71244 * 5 4 3 33 33 H 1.07997 * 126.45654 * 180.02562 * 6 5 4 34 34 H 0.97003 * 119.99929 * 355.27304 * 10 8 7 35 35 H 1.08999 * 109.46616 * 55.03868 * 13 11 10 36 36 H 1.08994 * 109.47404 * 175.03951 * 13 11 10 37 37 H 1.09001 * 109.46968 * 295.04174 * 13 11 10 38 38 H 1.08996 * 112.94431 * 293.41739 * 14 11 10 39 39 H 1.08998 * 113.77091 * 336.35131 * 15 14 11 40 40 H 1.09002 * 113.76900 * 107.74641 * 15 14 11 41 41 H 0.97005 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.09006 * 113.77075 * 221.14872 * 25 16 15 43 43 H 1.09003 * 113.86964 * 89.77234 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4011 2.0843 -1.0936 5 6 2.7965 3.3199 -0.7038 6 6 2.6515 3.3985 0.6848 7 6 2.1613 2.1821 1.1104 8 6 1.8535 1.8078 2.4948 9 8 1.5108 0.6696 2.7556 10 7 1.9558 2.7230 3.4789 11 6 1.5499 2.3793 4.8439 12 1 0.6935 1.7057 4.8096 13 6 2.7115 1.6909 5.5634 14 6 1.1662 3.6539 5.5982 15 6 0.3202 3.3975 6.8585 16 7 -0.4840 4.5616 6.4307 17 6 -1.2849 5.4640 7.0783 18 1 -1.7751 6.2484 6.5208 19 6 -1.4667 5.3706 8.4513 20 7 -0.8697 4.4144 9.1306 21 14 -2.5587 6.6021 9.3348 22 1 -3.9536 6.0937 9.3658 23 1 -2.0695 6.7900 10.7242 24 1 -2.5212 7.9014 8.6168 25 6 -0.0753 4.3623 5.0268 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3964 1.7176 -2.1095 32 1 3.1596 4.1048 -1.3507 33 1 2.8801 4.2514 1.3066 34 1 2.2982 3.6093 3.2834 35 1 3.5944 2.3287 5.5207 36 1 2.4408 1.5144 6.6044 37 1 2.9270 0.7392 5.0777 38 1 2.0129 4.3195 5.7660 39 1 -0.2259 2.4544 6.8367 40 1 0.8621 3.5551 7.7910 41 1 -0.9964 4.3493 10.0902 42 1 0.1514 5.2890 4.4994 43 1 -0.7369 3.7037 4.4640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970881593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = 40.784173 kcal Electronic energy + Delta-G solvation = -23326.581323 eV Core-core repulsion = 19987.486648 eV Total energy + Delta-G solvation = -3339.094675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31500 -40.64471 -39.36252 -36.25821 -35.01603 -34.11269 -32.22958 -30.20502 -29.84346 -29.25206 -26.57957 -25.75836 -24.55389 -23.91483 -22.35548 -21.29763 -21.17595 -20.08989 -18.83541 -18.62744 -17.28880 -16.81977 -16.74899 -16.28839 -15.84978 -15.56941 -15.33630 -15.18238 -14.84516 -14.65538 -14.51818 -14.04465 -13.43535 -13.39861 -13.27422 -13.18678 -13.10323 -13.06307 -12.95198 -12.84403 -12.67348 -12.35800 -12.13475 -12.01251 -11.80087 -11.58765 -11.22931 -10.90527 -10.86586 -10.09404 -9.64225 -9.09887 -8.92382 -7.90535 -5.24177 0.55444 1.45510 1.47659 1.56360 1.71863 1.90514 2.40946 2.46563 2.47638 3.29472 3.38767 3.66150 3.83885 3.91488 3.97731 4.12115 4.20790 4.26964 4.39173 4.44566 4.49096 4.53374 4.56261 4.76413 4.76959 4.84422 4.86210 4.88860 4.95362 5.07966 5.16159 5.23779 5.24748 5.30317 5.34567 5.52365 5.54531 5.64625 5.89575 5.93906 6.08807 6.40180 6.62647 6.91987 7.25685 7.60543 8.56401 9.26461 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.003257 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.232477 B = 8595.374327 C = 8806.175361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 N -0.416 5.416 4 C 0.022 3.978 5 C -0.221 4.221 6 C -0.139 4.139 7 C -0.085 4.085 8 C 0.583 3.417 9 O -0.585 6.585 10 N -0.698 5.698 11 C 0.168 3.832 12 H 0.060 0.940 13 C -0.151 4.151 14 C -0.109 4.109 15 C 0.171 3.829 16 N -0.643 5.643 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.128 3.872 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.202 0.798 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.107 0.893 39 H 0.011 0.989 40 H 0.048 0.952 41 H 0.249 0.751 42 H 0.061 0.939 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -5.623 -22.093 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.089 5.089 4 C -0.114 4.114 5 C -0.245 4.245 6 C -0.166 4.166 7 C -0.198 4.198 8 C 0.373 3.627 9 O -0.468 6.468 10 N -0.349 5.349 11 C 0.063 3.937 12 H 0.079 0.921 13 C -0.209 4.209 14 C -0.129 4.129 15 C 0.046 3.954 16 N -0.369 5.369 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.191 1.191 25 C 0.003 3.997 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.100 0.900 31 H 0.218 0.782 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.549 -6.634 -21.598 24.529 hybrid contribution -0.856 0.717 0.971 1.479 sum 8.693 -5.917 -20.627 23.153 Atomic orbital electron populations 1.22011 0.94245 1.03602 1.01582 1.22102 0.95827 0.79312 1.05315 1.44289 1.46972 1.12013 1.05667 1.22667 1.03096 0.93023 0.92573 1.21174 1.10004 0.98368 0.94912 1.21706 1.02532 0.95635 0.96718 1.20047 1.17583 0.94410 0.87780 1.17330 0.76582 0.84528 0.84299 1.90748 1.50530 1.20812 1.84676 1.45588 1.65405 1.16292 1.07601 1.20746 0.97232 0.95489 0.80258 0.92148 1.22039 0.98123 1.00382 1.00382 1.23456 0.97344 0.95844 0.96225 1.22130 0.89612 0.88412 0.95292 1.46412 1.55895 1.30736 1.03906 1.19449 1.20948 1.05547 0.90720 0.89911 1.25636 1.02448 1.00835 0.97054 1.69996 1.48111 1.35399 1.06668 0.85069 0.77906 0.78743 0.77555 1.21609 1.21865 1.19091 1.22653 0.92579 0.97493 0.86978 0.89317 0.95025 0.91282 0.85950 0.89976 0.78150 0.81901 0.82460 0.75049 0.90812 0.91624 0.93037 0.87528 0.97098 0.93365 0.94210 0.92040 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.23 71.98 0.74 -2.19 16 2 C 0.09 1.72 6.14 86.38 0.53 2.25 16 3 N -0.42 -8.67 2.76 -511.01 -1.41 -10.08 16 4 C 0.02 0.34 11.37 83.48 0.95 1.29 16 5 C -0.22 -3.65 10.81 22.01 0.24 -3.42 16 6 C -0.14 -2.81 10.35 22.57 0.23 -2.57 16 7 C -0.09 -2.13 6.89 40.35 0.28 -1.85 16 8 C 0.58 17.25 7.73 86.45 0.67 17.92 16 9 O -0.59 -20.74 14.21 -4.35 -0.06 -20.81 16 10 N -0.70 -18.64 4.93 -446.49 -2.20 -20.84 16 11 C 0.17 5.26 2.25 44.99 0.10 5.36 16 12 H 0.06 2.24 7.56 -2.38 -0.02 2.23 16 13 C -0.15 -4.27 9.46 71.98 0.68 -3.59 16 14 C -0.11 -3.88 3.35 -10.14 -0.03 -3.92 16 15 C 0.17 8.23 6.90 86.44 0.60 8.82 16 16 N -0.64 -33.64 3.70 -716.11 -2.65 -36.30 16 17 C -0.24 -13.65 10.70 84.03 0.90 -12.75 16 18 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.95 -58.21 11.39 21.65 0.25 -57.96 16 21 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.13 5.16 8.37 86.49 0.72 5.89 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.03 0.82 7.84 -2.39 -0.02 0.80 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.12 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.08 1.91 6.62 -2.39 -0.02 1.89 16 31 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.16 2.52 7.45 -2.91 -0.02 2.50 16 34 H 0.41 8.87 7.50 -92.71 -0.70 8.18 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.93 7.98 -2.39 -0.02 1.91 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.01 0.56 8.03 -2.39 -0.02 0.55 16 40 H 0.05 2.56 7.17 -2.39 -0.02 2.54 16 41 H 0.25 14.75 8.31 -92.70 -0.77 13.97 16 42 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 43 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -73.99 355.40 3.32 -70.68 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.30 Total: 19.17 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 7.07 Total: 7.85 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -6.02 Total: -125.18 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.99 3.32 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970881593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.462 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds