Wall clock time and date at job start Tue Mar 31 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35539 * 125.67553 * 2 1 4 4 C 1.35459 * 108.87054 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86532 * 359.73445 * 4 3 2 6 6 C 1.37648 * 125.68018 * 180.02562 * 2 1 3 7 7 C 1.46676 * 126.23616 * 359.97438 * 6 2 1 8 8 O 1.21695 * 119.99600 * 354.61355 * 7 6 2 9 9 N 1.34778 * 120.00368 * 174.88755 * 7 6 2 10 10 C 1.46497 * 119.99729 * 184.88766 * 9 7 6 11 11 H 1.08998 * 109.47655 * 324.99483 * 10 9 7 12 12 C 1.52996 * 109.47350 * 85.00266 * 10 9 7 13 13 C 1.52997 * 109.47382 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47015 * 299.99703 * 13 12 10 15 15 C 1.53003 * 109.47151 * 60.00247 * 14 13 12 16 16 H 1.09003 * 109.46863 * 59.99513 * 15 14 13 17 17 N 1.46499 * 109.47361 * 179.97438 * 15 14 13 18 18 C 1.36937 * 119.99657 * 274.99844 * 17 15 14 19 19 H 1.07998 * 120.00564 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99427 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99666 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47094 * 89.99935 * 22 20 18 24 24 H 1.48501 * 109.47132 * 209.99904 * 22 20 18 25 25 H 1.48496 * 109.46961 * 329.99758 * 22 20 18 26 26 C 1.53005 * 109.46693 * 205.00153 * 10 9 7 27 27 H 1.09003 * 109.46948 * 273.89307 * 1 2 3 28 28 H 1.08994 * 109.46962 * 33.89865 * 1 2 3 29 29 H 1.09003 * 109.46606 * 153.89920 * 1 2 3 30 30 H 1.07994 * 125.56601 * 359.97438 * 3 2 1 31 31 H 1.08000 * 126.06664 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.46226 * 180.27328 * 5 4 3 33 33 H 0.96997 * 119.99581 * 4.88776 * 9 7 6 34 34 H 1.09001 * 109.47146 * 300.00096 * 12 10 9 35 35 H 1.09008 * 109.47230 * 59.99622 * 12 10 9 36 36 H 1.08994 * 109.47001 * 60.00003 * 13 12 10 37 37 H 1.09000 * 109.47317 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.46929 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47481 * 300.00006 * 14 13 12 40 40 H 0.96997 * 120.00109 * 94.99717 * 17 15 14 41 41 H 0.97001 * 119.99954 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.46911 * 299.99649 * 26 10 9 43 43 H 1.08998 * 109.47120 * 60.00351 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7094 -0.0006 5 6 3.5781 -0.6888 0.0052 6 6 2.2679 -1.1181 -0.0005 7 6 1.8126 -2.5124 -0.0006 8 8 0.6263 -2.7651 0.0987 9 7 2.7084 -3.5139 -0.1051 10 6 2.2478 -4.9004 -0.2131 11 1 1.3474 -5.0319 0.3870 12 6 1.9372 -5.2222 -1.6762 13 6 1.4567 -6.6704 -1.7890 14 6 2.5507 -7.6117 -1.2810 15 6 2.8612 -7.2900 0.1823 16 1 1.9608 -7.4218 0.7823 17 7 3.9083 -8.1917 0.6690 18 6 3.5762 -9.4306 1.1486 19 1 2.5427 -9.7431 1.1678 20 6 4.5684 -10.2852 1.6093 21 7 4.2494 -11.4762 2.0699 22 14 6.3563 -9.7449 1.5756 23 1 6.6928 -9.0673 2.8534 24 1 7.2293 -10.9333 1.4005 25 1 6.5679 -8.8045 0.4459 26 6 3.3413 -5.8421 0.2953 27 1 -0.3633 0.0698 1.0253 28 1 -0.3633 0.8530 -0.5731 29 1 -0.3633 -0.9229 -0.4521 30 1 1.9082 2.1236 -0.0004 31 1 4.4133 1.3613 -0.0003 32 1 4.4584 -1.3144 0.0105 33 1 3.6581 -3.3166 -0.1088 34 1 1.1582 -4.5513 -2.0384 35 1 2.8377 -5.0907 -2.2762 36 1 0.5564 -6.8022 -1.1890 37 1 1.2350 -6.8995 -2.8314 38 1 2.2081 -8.6434 -1.3609 39 1 3.4510 -7.4799 -1.8810 40 1 4.8366 -7.9112 0.6514 41 1 4.9427 -12.0733 2.3921 42 1 4.2417 -5.7106 -0.3048 43 1 3.5625 -5.6128 1.3377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980922954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:52 Heat of formation + Delta-G solvation = 13.944857 kcal Electronic energy + Delta-G solvation = -23134.705688 eV Core-core repulsion = 19794.447173 eV Total energy + Delta-G solvation = -3340.258515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57718 -39.61504 -37.87378 -34.89049 -33.61806 -32.86487 -31.34856 -30.31830 -28.87055 -27.98431 -26.73032 -23.70948 -23.09743 -21.97749 -21.02838 -20.40053 -20.10277 -19.35559 -18.12202 -17.42518 -16.17155 -15.91768 -15.82068 -14.82003 -14.61255 -14.49229 -14.15971 -13.82314 -13.66442 -13.59140 -13.40659 -13.23063 -12.70216 -12.62902 -12.53608 -12.30601 -12.24438 -12.19462 -11.27595 -11.03850 -10.96512 -10.87011 -10.44248 -10.30420 -10.24511 -10.04942 -9.76291 -9.58191 -9.09493 -8.99375 -8.89854 -8.44215 -7.27091 -5.76458 -3.12179 1.29197 2.42669 2.51021 3.24432 3.27801 3.37371 3.39828 3.45423 4.56637 4.59110 4.59746 4.72819 4.84349 4.96768 5.00167 5.14286 5.17447 5.25154 5.37182 5.44279 5.50759 5.58912 5.61734 5.78027 5.80643 5.80774 5.91276 5.94853 6.05881 6.20243 6.23881 6.35041 6.45414 6.47937 6.57880 6.64156 6.73829 6.88566 6.94859 7.03034 7.44987 8.00221 8.12084 8.42657 9.21025 9.93431 10.13100 11.41938 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.003273 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.555486 B = 8553.436773 C = 9198.069483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.411 5.411 3 C 0.010 3.990 4 C -0.208 4.208 5 C -0.143 4.143 6 C -0.050 4.050 7 C 0.588 3.412 8 O -0.551 6.551 9 N -0.711 5.711 10 C 0.151 3.849 11 H 0.092 0.908 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.188 3.812 16 H 0.058 0.942 17 N -0.748 5.748 18 C -0.242 4.242 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.168 0.832 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.401 0.599 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 25.856 -7.250 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.084 5.084 3 C -0.125 4.125 4 C -0.232 4.232 5 C -0.169 4.169 6 C -0.164 4.164 7 C 0.376 3.624 8 O -0.430 6.430 9 N -0.361 5.361 10 C 0.047 3.953 11 H 0.110 0.890 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.078 3.922 16 H 0.076 0.924 17 N -0.390 5.390 18 C -0.372 4.372 19 H 0.109 0.891 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.173 4.173 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.185 0.815 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.236 0.764 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.277 25.400 -7.092 26.894 hybrid contribution 1.874 0.476 -0.008 1.934 sum -3.403 25.876 -7.100 27.047 Atomic orbital electron populations 1.22299 0.76092 1.05464 1.03809 1.43870 1.06859 1.04995 1.52668 1.22019 0.90761 0.91508 1.08252 1.20830 0.96004 0.95049 1.11314 1.21376 0.94486 0.95545 1.05524 1.20153 0.90484 0.87740 1.17995 1.16988 0.85742 0.83480 0.76191 1.90773 1.16386 1.84835 1.51056 1.45804 1.09651 1.06471 1.74171 1.21038 0.98726 0.78517 0.97030 0.89007 1.21900 1.01145 0.97407 0.95825 1.21478 0.99251 0.93771 1.00804 1.22258 0.97470 0.99410 0.98606 1.20061 0.92588 0.86668 0.92848 0.92421 1.42765 1.03899 1.15961 1.76397 1.19080 0.95260 0.89634 1.33199 0.89146 1.24678 0.97416 0.96097 1.01024 1.69704 1.32256 1.08138 1.48130 0.86547 0.86647 0.77545 0.77759 1.21119 1.21810 1.20340 1.22130 0.97587 0.96009 1.01539 0.90548 0.90124 0.87644 0.81516 0.84026 0.83848 0.76427 0.92224 0.91971 0.91955 0.92316 0.91371 0.92737 0.80715 0.93078 0.91726 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.64 59.85 0.64 1.16 16 2 N -0.41 -4.21 3.16 -120.23 -0.38 -4.59 16 3 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -1.83 10.81 -39.97 -0.43 -2.26 16 5 C -0.14 -1.42 10.36 -39.11 -0.41 -1.82 16 6 C -0.05 -0.59 6.88 -81.98 -0.56 -1.15 16 7 C 0.59 7.87 7.73 -12.85 -0.10 7.77 16 8 O -0.55 -8.81 14.28 5.19 0.07 -8.74 16 9 N -0.71 -8.44 5.06 -55.12 -0.28 -8.72 16 10 C 0.15 2.03 2.50 -67.93 -0.17 1.86 16 11 H 0.09 1.40 7.51 -51.93 -0.39 1.01 16 12 C -0.12 -1.60 5.49 -26.73 -0.15 -1.75 16 13 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.14 -2.31 5.50 -26.73 -0.15 -2.46 16 15 C 0.19 3.49 2.77 -67.95 -0.19 3.30 16 16 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 17 N -0.75 -17.26 4.93 -53.44 -0.26 -17.52 16 18 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 22 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 26 C -0.13 -1.98 4.86 -26.75 -0.13 -2.11 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 1.07 6.22 -51.93 -0.32 0.75 16 30 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.14 1.12 7.45 -52.49 -0.39 0.73 16 33 H 0.40 3.84 7.50 -40.82 -0.31 3.53 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.36 8.14 5.66 -40.82 -0.23 7.90 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -33.57 346.96 -8.53 -42.11 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.73 Total: 9.75 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.25 Total: -6.19 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.15 Total: -59.36 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.57 -8.53 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980922954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.053 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds