Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35536 * 125.67576 * 2 1 4 4 C 1.35458 * 108.86870 * 180.02562 * 3 2 1 5 5 C 1.39835 * 107.86501 * 359.73834 * 4 3 2 6 6 C 1.37645 * 125.67787 * 180.02562 * 2 1 3 7 7 C 1.46675 * 126.23556 * 359.96934 * 6 2 1 8 8 O 1.21698 * 120.00098 * 4.07034 * 7 6 2 9 9 N 1.34779 * 120.00498 * 184.06440 * 7 6 2 10 10 C 1.46496 * 120.00146 * 175.08236 * 9 7 6 11 11 H 1.08995 * 109.47271 * 34.72399 * 10 9 7 12 12 C 1.53006 * 109.46934 * 274.72525 * 10 9 7 13 13 C 1.53006 * 109.47122 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46859 * 60.00167 * 13 12 10 15 15 C 1.53006 * 109.47118 * 299.99836 * 14 13 12 16 16 H 1.09003 * 109.46780 * 300.00507 * 15 14 13 17 17 N 1.46496 * 109.47128 * 180.02562 * 15 14 13 18 18 C 1.36932 * 119.99898 * 84.99844 * 17 15 14 19 19 H 1.08000 * 120.00609 * 0.02562 * 18 17 15 20 20 C 1.38821 * 119.99836 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99992 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99814 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46915 * 90.00530 * 22 20 18 24 24 H 1.48502 * 109.46760 * 210.00229 * 22 20 18 25 25 H 1.48497 * 109.47276 * 330.00344 * 22 20 18 26 26 C 1.53002 * 109.46814 * 154.72834 * 10 9 7 27 27 H 1.09006 * 109.46874 * 265.08817 * 1 2 3 28 28 H 1.09005 * 109.47486 * 25.08453 * 1 2 3 29 29 H 1.08995 * 109.47586 * 145.08959 * 1 2 3 30 30 H 1.07994 * 125.56661 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.06070 * 179.97438 * 4 3 2 32 32 H 1.08000 * 126.45730 * 180.26725 * 5 4 3 33 33 H 0.97005 * 119.99525 * 354.80571 * 9 7 6 34 34 H 1.09003 * 109.46780 * 299.99987 * 12 10 9 35 35 H 1.08996 * 109.46996 * 60.00189 * 12 10 9 36 36 H 1.08996 * 109.46957 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.46850 * 300.00288 * 13 12 10 38 38 H 1.08995 * 109.47556 * 59.99998 * 14 13 12 39 39 H 1.09004 * 109.46781 * 180.02562 * 14 13 12 40 40 H 0.97006 * 119.99747 * 265.00000 * 17 15 14 41 41 H 0.96996 * 119.99781 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.47211 * 299.99434 * 26 10 9 43 43 H 1.09000 * 109.47291 * 60.00134 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 -0.0006 5 6 3.5780 -0.6888 0.0051 6 6 2.2678 -1.1181 -0.0005 7 6 1.8124 -2.5124 -0.0005 8 8 0.6241 -2.7644 -0.0748 9 7 2.7099 -3.5145 0.0817 10 6 2.2512 -4.9016 0.1904 11 1 1.3371 -5.0284 -0.3895 12 6 1.9743 -5.2337 1.6581 13 6 1.4959 -6.6825 1.7717 14 6 2.5774 -7.6205 1.2318 15 6 2.8542 -7.2884 -0.2359 16 1 1.9401 -7.4157 -0.8159 17 7 3.8893 -8.1870 -0.7531 18 6 3.5458 -9.4223 -1.2337 19 1 2.5118 -9.7342 -1.2319 20 6 4.5267 -10.2739 -1.7232 21 7 4.1965 -11.4612 -2.1857 22 14 6.3151 -9.7343 -1.7270 23 1 6.9556 -10.1350 -0.4485 24 1 7.0247 -10.3807 -2.8601 25 1 6.3866 -8.2585 -1.8753 26 6 3.3323 -5.8400 -0.3497 27 1 -0.3633 -0.0880 1.0240 28 1 -0.3634 0.9308 -0.4357 29 1 -0.3634 -0.8427 -0.5881 30 1 1.9081 2.1236 0.0004 31 1 4.4131 1.3613 -0.0011 32 1 4.4583 -1.3144 0.0103 33 1 3.6596 -3.3176 0.0649 34 1 2.8886 -5.1068 2.2379 35 1 1.2042 -4.5651 2.0428 36 1 1.2982 -6.9189 2.8172 37 1 0.5818 -6.8098 1.1916 38 1 3.4914 -7.4933 1.8117 39 1 2.2363 -8.6527 1.3123 40 1 4.8180 -7.9067 -0.7550 41 1 4.8819 -12.0561 -2.5280 42 1 3.5295 -5.6034 -1.3953 43 1 4.2464 -5.7131 0.2303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980922955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = -8.558575 kcal Electronic energy + Delta-G solvation = -23134.854274 eV Core-core repulsion = 19793.619937 eV Total energy + Delta-G solvation = -3341.234337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.30825 -40.68105 -39.12264 -36.37072 -34.98798 -33.67911 -33.25068 -31.34043 -30.23209 -29.16312 -27.36947 -25.44694 -24.26361 -23.22207 -22.17019 -21.28531 -21.24275 -20.52511 -19.55694 -18.74566 -17.38008 -16.85829 -16.62403 -16.40248 -15.90421 -15.57369 -15.41486 -15.11832 -14.88609 -14.83127 -14.49461 -14.34376 -14.11150 -13.75672 -13.51529 -13.24171 -13.17794 -13.02604 -12.88669 -12.87644 -12.39398 -12.19383 -11.99373 -11.81197 -11.70571 -11.51196 -11.45449 -10.97499 -10.89355 -10.13944 -9.67452 -9.30402 -9.16112 -8.00531 -5.34342 0.48812 1.39322 1.43803 1.51006 1.68415 1.84630 2.37971 2.38749 2.50736 3.30725 3.44421 3.73498 3.83643 3.99024 4.00675 4.14609 4.20987 4.26448 4.36287 4.37596 4.49348 4.50251 4.55403 4.57156 4.63559 4.73503 4.74164 4.97323 5.10020 5.13442 5.18706 5.19307 5.28840 5.33995 5.43541 5.49085 5.61289 5.79421 5.83729 6.02730 6.23480 6.33441 6.54281 7.09893 7.17835 7.85153 8.05878 9.21280 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.003272 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.959609 B = 8554.968379 C = 9191.123819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.422 5.422 3 C 0.022 3.978 4 C -0.222 4.222 5 C -0.137 4.137 6 C -0.090 4.090 7 C 0.585 3.415 8 O -0.587 6.587 9 N -0.701 5.701 10 C 0.160 3.840 11 H 0.068 0.932 12 C -0.115 4.115 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.181 3.819 16 H 0.034 0.966 17 N -0.750 5.750 18 C -0.228 4.228 19 H 0.052 0.948 20 C -0.068 4.068 21 N -0.987 5.987 22 Si 0.958 3.042 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.247 1.247 26 C -0.119 4.119 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.203 0.797 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.414 0.586 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.367 0.633 41 H 0.257 0.743 42 H 0.067 0.933 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 29.523 8.507 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.095 5.095 3 C -0.114 4.114 4 C -0.246 4.246 5 C -0.164 4.164 6 C -0.203 4.203 7 C 0.374 3.626 8 O -0.470 6.470 9 N -0.352 5.352 10 C 0.055 3.945 11 H 0.086 0.914 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.072 3.928 16 H 0.053 0.947 17 N -0.393 5.393 18 C -0.359 4.359 19 H 0.070 0.930 20 C -0.259 4.259 21 N -0.638 5.638 22 Si 0.785 3.215 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.171 1.171 26 C -0.158 4.158 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.220 0.780 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.147 29.128 8.396 30.477 hybrid contribution 1.145 -0.598 -0.372 1.344 sum -2.002 28.530 8.024 29.705 Atomic orbital electron populations 1.22309 0.75482 1.05499 1.04157 1.44121 1.07513 1.05162 1.52716 1.22713 0.90612 0.92426 1.05646 1.21210 0.97096 0.94822 1.11424 1.21728 0.94268 0.96577 1.03820 1.20063 0.91614 0.87259 1.21382 1.17312 0.85329 0.84486 0.75428 1.90760 1.17748 1.85513 1.52979 1.45595 1.10246 1.05383 1.73961 1.20764 0.97406 0.79303 0.97015 0.91403 1.21814 1.01936 0.96235 0.95326 1.21409 0.97848 0.93792 1.01505 1.22084 0.98999 0.98487 0.97233 1.20257 0.91033 0.88356 0.93128 0.94744 1.42722 1.05673 1.15274 1.75592 1.19004 0.93808 0.91447 1.31688 0.92974 1.25556 1.02739 0.96217 1.01393 1.69901 1.34102 1.10190 1.49616 0.85357 0.79967 0.79009 0.77128 1.20388 1.22585 1.17094 1.21927 0.98760 0.93292 1.01839 0.90445 0.86662 0.90512 0.78020 0.81808 0.82177 0.74856 0.90166 0.92328 0.90413 0.92771 0.91614 0.94308 0.79942 0.93419 0.91452 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.49 127.77 1.34 2.35 16 2 N -0.42 -7.86 3.16 -534.31 -1.69 -9.55 16 3 C 0.02 0.29 11.37 83.48 0.95 1.24 16 4 C -0.22 -3.16 10.81 22.01 0.24 -2.92 16 5 C -0.14 -2.37 10.36 22.57 0.23 -2.14 16 6 C -0.09 -2.00 6.89 40.35 0.28 -1.72 16 7 C 0.58 15.37 7.75 86.45 0.67 16.04 16 8 O -0.59 -19.21 14.38 -4.34 -0.06 -19.28 16 9 N -0.70 -15.66 5.06 -446.50 -2.26 -17.92 16 10 C 0.16 4.16 2.50 44.99 0.11 4.27 16 11 H 0.07 2.12 7.50 -2.39 -0.02 2.10 16 12 C -0.11 -2.75 5.50 30.60 0.17 -2.59 16 13 C -0.11 -2.85 5.92 30.60 0.18 -2.67 16 14 C -0.13 -4.24 5.50 30.60 0.17 -4.07 16 15 C 0.18 6.68 2.77 44.98 0.12 6.80 16 16 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 17 N -0.75 -34.27 4.92 -323.00 -1.59 -35.86 16 18 C -0.23 -13.06 10.41 84.04 0.87 -12.18 16 19 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.99 -63.97 13.97 21.65 0.30 -63.67 16 22 Si 0.96 45.08 27.74 68.60 1.90 46.98 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 26 C -0.12 -3.34 4.86 30.58 0.15 -3.19 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.11 0.91 8.12 -2.38 -0.02 0.89 16 29 H 0.08 1.59 6.52 -2.39 -0.02 1.57 16 30 H 0.20 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.16 2.02 7.44 -2.91 -0.02 2.00 16 33 H 0.41 6.92 7.50 -92.70 -0.70 6.23 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.37 15.75 5.66 -92.70 -0.52 15.23 16 41 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -75.80 347.18 2.29 -73.51 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.27 Total: 30.13 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.95 Total: -4.35 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -5.24 Total: -127.00 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -75.80 2.29 -73.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980922955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.956 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds