Wall clock time and date at job start Tue Mar 31 2020 07:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.35543 * 125.67701 * 2 1 4 4 C 1.35450 * 108.86918 * 180.02562 * 3 2 1 5 5 C 1.39833 * 107.86845 * 359.97438 * 4 3 2 6 6 C 1.37650 * 125.68363 * 180.02562 * 2 1 3 7 7 C 1.46685 * 126.22969 * 359.97438 * 6 2 1 8 8 O 1.21694 * 119.99940 * 354.30073 * 7 6 2 9 9 N 1.34777 * 120.00185 * 174.30722 * 7 6 2 10 10 C 1.46502 * 120.00053 * 185.15850 * 9 7 6 11 11 H 1.09001 * 109.46578 * 324.99428 * 10 9 7 12 12 C 1.52998 * 109.47038 * 84.99637 * 10 9 7 13 13 C 1.52992 * 109.47195 * 60.00115 * 12 10 9 14 14 C 1.52999 * 109.47445 * 59.99794 * 13 12 10 15 15 C 1.52998 * 109.47092 * 300.00269 * 14 13 12 16 16 H 1.09007 * 109.46799 * 299.99505 * 15 14 13 17 17 N 1.46496 * 109.47143 * 180.02562 * 15 14 13 18 18 C 1.36938 * 120.00444 * 84.99515 * 17 15 14 19 19 H 1.08002 * 119.99600 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00075 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00176 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99986 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47043 * 90.00052 * 22 20 18 24 24 H 1.48496 * 109.46916 * 209.99822 * 22 20 18 25 25 H 1.48496 * 109.47256 * 330.00028 * 22 20 18 26 26 C 1.52998 * 109.47500 * 59.99645 * 15 14 13 27 27 H 1.09000 * 109.47289 * 273.93037 * 1 2 3 28 28 H 1.08997 * 109.47354 * 33.93143 * 1 2 3 29 29 H 1.09001 * 109.47172 * 153.93238 * 1 2 3 30 30 H 1.07994 * 125.55942 * 0.05127 * 3 2 1 31 31 H 1.08007 * 126.06100 * 180.26300 * 4 3 2 32 32 H 1.08001 * 126.45955 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99959 * 5.15100 * 9 7 6 34 34 H 1.09007 * 109.46799 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47064 * 299.99507 * 12 10 9 36 36 H 1.09000 * 109.46928 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47185 * 299.99703 * 13 12 10 38 38 H 1.09007 * 109.46894 * 59.99715 * 14 13 12 39 39 H 1.08995 * 109.47085 * 179.97438 * 14 13 12 40 40 H 0.97004 * 119.99564 * 264.98994 * 17 15 14 41 41 H 0.96998 * 120.00208 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.47594 * 180.02562 * 26 15 14 43 43 H 1.08997 * 109.47088 * 60.00170 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 3.5779 -0.6887 -0.0004 6 6 2.2678 -1.1181 -0.0005 7 6 1.8124 -2.5124 -0.0006 8 8 0.6267 -2.7653 0.1044 9 7 2.7072 -3.5136 -0.1169 10 6 2.2454 -4.8992 -0.2307 11 1 1.3486 -5.0341 0.3740 12 6 1.9256 -5.2116 -1.6940 13 6 3.1844 -5.0223 -2.5427 14 6 4.2807 -5.9675 -2.0472 15 6 4.6004 -5.6551 -0.5840 16 1 4.9441 -4.6241 -0.4993 17 7 5.6505 -6.5598 -0.1097 18 6 6.9675 -6.2535 -0.3262 19 1 7.2320 -5.3447 -0.8463 20 6 7.9625 -7.1105 0.1237 21 7 9.2282 -6.8163 -0.0848 22 14 7.5048 -8.6821 1.0239 23 1 7.3434 -9.7853 0.0430 24 1 8.5787 -9.0306 1.9885 25 1 6.2286 -8.4797 1.7557 26 6 3.3416 -5.8445 0.2649 27 1 -0.3634 0.0704 1.0252 28 1 -0.3634 0.8526 -0.5736 29 1 -0.3633 -0.9231 -0.4516 30 1 1.9080 2.1236 0.0008 31 1 4.4131 1.3613 0.0033 32 1 4.4583 -1.3143 -0.0003 33 1 3.6570 -3.3167 -0.1253 34 1 1.5816 -6.2425 -1.7786 35 1 1.1446 -4.5382 -2.0470 36 1 2.9567 -5.2453 -3.5851 37 1 3.5280 -3.9914 -2.4580 38 1 3.9370 -6.9985 -2.1319 39 1 5.1772 -5.8329 -2.6522 40 1 5.4129 -7.3759 0.3578 41 1 9.9235 -7.4154 0.2293 42 1 3.5693 -5.6215 1.3072 43 1 2.9980 -6.8754 0.1802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980922956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:00 Heat of formation + Delta-G solvation = 16.835610 kcal Electronic energy + Delta-G solvation = -23660.697514 eV Core-core repulsion = 20320.564352 eV Total energy + Delta-G solvation = -3340.133163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.45154 -39.73742 -37.79638 -34.66805 -33.43475 -32.63197 -31.37181 -30.32998 -28.83184 -28.17781 -26.60768 -23.64850 -23.05392 -22.07246 -21.02222 -20.64601 -19.77387 -18.90352 -18.02892 -17.53666 -16.02306 -15.76897 -15.47158 -15.19491 -14.63472 -14.48234 -14.13868 -13.78807 -13.61392 -13.50032 -13.34215 -12.82322 -12.68020 -12.49402 -12.41879 -12.24489 -12.12188 -11.92062 -11.81594 -11.27152 -11.00449 -10.91015 -10.43114 -10.27022 -10.08927 -9.94167 -9.72227 -9.58632 -9.02157 -8.88876 -8.83744 -8.29511 -7.28874 -5.78421 -3.14220 1.42342 2.55472 2.66499 3.36588 3.37567 3.39583 3.42128 3.44930 4.57872 4.66201 4.70433 4.85413 4.92630 5.02192 5.04430 5.08929 5.30559 5.32591 5.43622 5.46684 5.48149 5.59440 5.61377 5.76935 5.85289 5.95708 5.99439 6.01565 6.08207 6.15709 6.22813 6.38365 6.42385 6.56502 6.62965 6.69406 6.85083 6.88616 6.99121 7.08919 7.58472 7.97300 8.23003 8.40562 9.18919 9.91632 10.11100 11.39834 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.003963 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.885827 B = 7063.014766 C = 7776.201275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.413 5.413 3 C 0.009 3.991 4 C -0.206 4.206 5 C -0.138 4.138 6 C -0.053 4.053 7 C 0.590 3.410 8 O -0.559 6.559 9 N -0.705 5.705 10 C 0.154 3.846 11 H 0.087 0.913 12 C -0.127 4.127 13 C -0.116 4.116 14 C -0.137 4.137 15 C 0.185 3.815 16 H 0.051 0.949 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.167 0.833 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.071 0.929 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.688 12.742 -1.215 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.086 5.086 3 C -0.126 4.126 4 C -0.230 4.230 5 C -0.164 4.164 6 C -0.166 4.166 7 C 0.378 3.622 8 O -0.440 6.440 9 N -0.357 5.357 10 C 0.049 3.951 11 H 0.105 0.895 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.177 4.177 15 C 0.075 3.925 16 H 0.069 0.931 17 N -0.391 5.391 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.176 4.176 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.184 0.816 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.244 0.756 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.686 12.612 -1.204 22.577 hybrid contribution 0.349 -0.979 0.612 1.206 sum -18.337 11.633 -0.592 21.724 Atomic orbital electron populations 1.22252 0.76337 1.05305 1.03585 1.43828 1.06690 1.05011 1.53098 1.21999 0.90778 0.91419 1.08435 1.20853 0.95992 0.95112 1.11045 1.21472 0.94651 0.95647 1.04668 1.20116 0.90477 0.87670 1.18342 1.16982 0.85616 0.83567 0.76028 1.90737 1.16502 1.84945 1.51818 1.45861 1.10156 1.06207 1.73461 1.20951 0.97774 0.79611 0.96719 0.89532 1.21914 0.98145 1.01692 0.94842 1.21505 0.95260 1.00248 0.98432 1.22246 0.97729 0.98531 0.99188 1.20128 0.86991 0.94402 0.90988 0.93145 1.42781 1.02783 1.24384 1.69108 1.19062 0.80633 1.06396 1.31267 0.89169 1.24663 0.95047 0.98463 1.00867 1.69695 0.98461 1.38324 1.51636 0.86565 0.77332 0.84807 0.79901 1.21146 1.21800 1.20314 1.22175 0.95590 0.99229 1.00649 0.90755 0.90252 0.87781 0.81586 0.83944 0.83566 0.75629 0.91072 0.92147 0.92668 0.92284 0.92653 0.91502 0.80644 0.93061 0.91043 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.64 59.84 0.64 1.23 16 2 N -0.41 -4.70 3.16 -120.24 -0.38 -5.08 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -2.21 10.81 -39.98 -0.43 -2.64 16 5 C -0.14 -1.69 10.35 -39.12 -0.41 -2.09 16 6 C -0.05 -0.70 6.88 -81.98 -0.56 -1.26 16 7 C 0.59 8.45 7.73 -12.85 -0.10 8.35 16 8 O -0.56 -9.05 14.29 5.19 0.07 -8.97 16 9 N -0.70 -9.39 4.22 -55.11 -0.23 -9.62 16 10 C 0.15 2.05 2.83 -67.93 -0.19 1.86 16 11 H 0.09 1.19 7.51 -51.93 -0.39 0.80 16 12 C -0.13 -1.62 5.60 -26.74 -0.15 -1.77 16 13 C -0.12 -1.57 5.76 -26.74 -0.15 -1.73 16 14 C -0.14 -2.24 5.50 -26.73 -0.15 -2.39 16 15 C 0.18 3.26 2.60 -67.93 -0.18 3.08 16 16 H 0.05 0.91 6.44 -51.93 -0.33 0.57 16 17 N -0.75 -16.85 4.93 -53.43 -0.26 -17.11 16 18 C -0.24 -6.63 10.41 -15.06 -0.16 -6.78 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.85 13.97 55.49 0.78 -28.08 16 22 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 26 C -0.14 -2.02 5.08 -26.73 -0.14 -2.16 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 1.11 6.23 -51.93 -0.32 0.79 16 30 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.15 1.65 7.45 -52.49 -0.39 1.26 16 33 H 0.41 5.26 5.77 -40.82 -0.24 5.02 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.81 7.60 -51.93 -0.39 0.41 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.36 8.06 5.66 -40.82 -0.23 7.83 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -32.63 342.54 -8.39 -41.02 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.54 Total: 11.99 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.26 Total: -6.35 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.10 Total: -59.88 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.63 -8.39 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980922956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.852 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds