Wall clock time and date at job start Tue Mar 31 2020 07:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.35543 * 125.67701 * 2 1 4 4 C 1.35450 * 108.86918 * 180.02562 * 3 2 1 5 5 C 1.39833 * 107.86845 * 359.97438 * 4 3 2 6 6 C 1.37650 * 125.68363 * 180.02562 * 2 1 3 7 7 C 1.46685 * 126.22969 * 359.97438 * 6 2 1 8 8 O 1.21694 * 119.99940 * 354.30073 * 7 6 2 9 9 N 1.34777 * 120.00185 * 174.30722 * 7 6 2 10 10 C 1.46502 * 120.00053 * 185.15850 * 9 7 6 11 11 H 1.09001 * 109.46578 * 324.99428 * 10 9 7 12 12 C 1.52998 * 109.47038 * 84.99637 * 10 9 7 13 13 C 1.52992 * 109.47195 * 60.00115 * 12 10 9 14 14 C 1.52999 * 109.47445 * 59.99794 * 13 12 10 15 15 C 1.52998 * 109.47092 * 300.00269 * 14 13 12 16 16 H 1.09007 * 109.46799 * 299.99505 * 15 14 13 17 17 N 1.46496 * 109.47143 * 180.02562 * 15 14 13 18 18 C 1.36938 * 120.00444 * 84.99515 * 17 15 14 19 19 H 1.08002 * 119.99600 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00075 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00176 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99986 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47043 * 90.00052 * 22 20 18 24 24 H 1.48496 * 109.46916 * 209.99822 * 22 20 18 25 25 H 1.48496 * 109.47256 * 330.00028 * 22 20 18 26 26 C 1.52998 * 109.47500 * 59.99645 * 15 14 13 27 27 H 1.09000 * 109.47289 * 273.93037 * 1 2 3 28 28 H 1.08997 * 109.47354 * 33.93143 * 1 2 3 29 29 H 1.09001 * 109.47172 * 153.93238 * 1 2 3 30 30 H 1.07994 * 125.55942 * 0.05127 * 3 2 1 31 31 H 1.08007 * 126.06100 * 180.26300 * 4 3 2 32 32 H 1.08001 * 126.45955 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99959 * 5.15100 * 9 7 6 34 34 H 1.09007 * 109.46799 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47064 * 299.99507 * 12 10 9 36 36 H 1.09000 * 109.46928 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47185 * 299.99703 * 13 12 10 38 38 H 1.09007 * 109.46894 * 59.99715 * 14 13 12 39 39 H 1.08995 * 109.47085 * 179.97438 * 14 13 12 40 40 H 0.97004 * 119.99564 * 264.98994 * 17 15 14 41 41 H 0.96998 * 120.00208 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.47594 * 180.02562 * 26 15 14 43 43 H 1.08997 * 109.47088 * 60.00170 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 3.5779 -0.6887 -0.0004 6 6 2.2678 -1.1181 -0.0005 7 6 1.8124 -2.5124 -0.0006 8 8 0.6267 -2.7653 0.1044 9 7 2.7072 -3.5136 -0.1169 10 6 2.2454 -4.8992 -0.2307 11 1 1.3486 -5.0341 0.3740 12 6 1.9256 -5.2116 -1.6940 13 6 3.1844 -5.0223 -2.5427 14 6 4.2807 -5.9675 -2.0472 15 6 4.6004 -5.6551 -0.5840 16 1 4.9441 -4.6241 -0.4993 17 7 5.6505 -6.5598 -0.1097 18 6 6.9675 -6.2535 -0.3262 19 1 7.2320 -5.3447 -0.8463 20 6 7.9625 -7.1105 0.1237 21 7 9.2282 -6.8163 -0.0848 22 14 7.5048 -8.6821 1.0239 23 1 7.3434 -9.7853 0.0430 24 1 8.5787 -9.0306 1.9885 25 1 6.2286 -8.4797 1.7557 26 6 3.3416 -5.8445 0.2649 27 1 -0.3634 0.0704 1.0252 28 1 -0.3634 0.8526 -0.5736 29 1 -0.3633 -0.9231 -0.4516 30 1 1.9080 2.1236 0.0008 31 1 4.4131 1.3613 0.0033 32 1 4.4583 -1.3143 -0.0003 33 1 3.6570 -3.3167 -0.1253 34 1 1.5816 -6.2425 -1.7786 35 1 1.1446 -4.5382 -2.0470 36 1 2.9567 -5.2453 -3.5851 37 1 3.5280 -3.9914 -2.4580 38 1 3.9370 -6.9985 -2.1319 39 1 5.1772 -5.8329 -2.6522 40 1 5.4129 -7.3759 0.3578 41 1 9.9235 -7.4154 0.2293 42 1 3.5693 -5.6215 1.3072 43 1 2.9980 -6.8754 0.1802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980922956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:58 Heat of formation + Delta-G solvation = -3.821160 kcal Electronic energy + Delta-G solvation = -23661.593259 eV Core-core repulsion = 20320.564352 eV Total energy + Delta-G solvation = -3341.028907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32956 -40.85619 -39.03446 -36.26996 -34.67356 -33.62850 -33.19694 -31.43051 -30.18940 -29.38781 -27.35115 -25.40687 -24.21539 -23.25819 -22.45553 -21.57789 -20.75697 -20.23535 -19.46369 -18.85940 -17.15433 -16.76621 -16.70914 -16.34639 -16.26817 -15.59252 -15.37631 -15.14426 -14.85237 -14.66873 -14.44019 -14.17604 -14.09919 -13.72330 -13.30527 -13.17284 -13.07219 -13.06068 -12.98528 -12.88185 -12.82567 -12.39000 -11.96368 -11.80528 -11.63486 -11.52185 -11.05496 -11.02435 -10.86954 -10.09566 -9.67605 -9.27402 -9.16281 -7.98693 -5.31605 0.48239 1.40399 1.43183 1.50484 1.70887 1.83584 2.37933 2.44670 2.51551 3.33002 3.45223 3.76683 3.86716 3.91333 4.00014 4.17945 4.20599 4.27524 4.32927 4.40076 4.49024 4.53092 4.56516 4.64652 4.69680 4.74229 4.79765 4.92988 5.07805 5.15311 5.17228 5.20621 5.29141 5.36375 5.47672 5.50692 5.62592 5.81454 5.83112 6.01023 6.25435 6.34312 6.51242 7.12025 7.15645 7.88420 8.07007 9.22867 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.003963 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.885827 B = 7063.014766 C = 7776.201275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.419 5.419 3 C 0.026 3.974 4 C -0.224 4.224 5 C -0.147 4.147 6 C -0.087 4.087 7 C 0.589 3.411 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.159 3.841 11 H 0.089 0.911 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.178 3.822 16 H 0.043 0.957 17 N -0.751 5.751 18 C -0.224 4.224 19 H 0.058 0.942 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.952 3.048 23 H -0.281 1.281 24 H -0.300 1.300 25 H -0.249 1.249 26 C -0.126 4.126 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.207 0.793 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.407 0.593 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.365 0.635 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.152 13.247 -0.910 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.092 5.092 3 C -0.110 4.110 4 C -0.247 4.247 5 C -0.174 4.174 6 C -0.199 4.199 7 C 0.378 3.622 8 O -0.465 6.465 9 N -0.355 5.355 10 C 0.055 3.945 11 H 0.107 0.893 12 C -0.158 4.158 13 C -0.145 4.145 14 C -0.168 4.168 15 C 0.071 3.929 16 H 0.061 0.939 17 N -0.394 5.394 18 C -0.355 4.355 19 H 0.076 0.924 20 C -0.256 4.256 21 N -0.636 5.636 22 Si 0.780 3.220 23 H -0.207 1.207 24 H -0.227 1.227 25 H -0.174 1.174 26 C -0.164 4.164 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.223 0.777 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.244 0.756 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.198 0.802 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.216 13.125 -0.908 24.964 hybrid contribution 1.102 -0.970 0.459 1.538 sum -20.114 12.155 -0.449 23.506 Atomic orbital electron populations 1.22373 0.75087 1.05699 1.04436 1.44104 1.07626 1.04858 1.52620 1.22665 0.90250 0.92563 1.05544 1.21177 0.97382 0.94578 1.11599 1.21658 0.94469 0.96778 1.04479 1.20076 0.91241 0.87748 1.20883 1.17172 0.85302 0.84205 0.75502 1.90715 1.17290 1.85375 1.53139 1.45855 1.10099 1.06241 1.73294 1.20910 0.97129 0.79268 0.97242 0.89304 1.21863 0.97395 1.02704 0.93869 1.21408 0.94593 0.99114 0.99363 1.22083 0.97574 0.99639 0.97537 1.20354 0.87155 0.93091 0.92339 0.93899 1.42795 1.01953 1.25315 1.69341 1.19021 0.82817 1.04684 1.29021 0.92393 1.25460 0.94882 1.02404 1.02843 1.69879 0.99794 1.39985 1.53972 0.85448 0.77805 0.80219 0.78539 1.20735 1.22703 1.17392 1.22042 0.94178 1.00530 0.99668 0.90084 0.86924 0.89871 0.77653 0.82262 0.83762 0.75601 0.89421 0.92139 0.91249 0.92730 0.92089 0.94381 0.80176 0.93514 0.91393 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 10.64 127.77 1.36 2.38 16 2 N -0.42 -8.81 3.16 -534.34 -1.69 -10.50 16 3 C 0.03 0.43 11.38 83.48 0.95 1.38 16 4 C -0.22 -4.44 10.81 22.01 0.24 -4.20 16 5 C -0.15 -3.55 10.35 22.57 0.23 -3.32 16 6 C -0.09 -2.24 6.88 40.35 0.28 -1.97 16 7 C 0.59 16.67 7.73 86.45 0.67 17.34 16 8 O -0.58 -18.59 14.29 -4.33 -0.06 -18.65 16 9 N -0.70 -18.40 4.22 -446.49 -1.88 -20.29 16 10 C 0.16 3.99 2.83 44.99 0.13 4.12 16 11 H 0.09 2.27 7.51 -2.39 -0.02 2.26 16 12 C -0.12 -2.79 5.60 30.59 0.17 -2.62 16 13 C -0.11 -2.73 5.76 30.59 0.18 -2.55 16 14 C -0.13 -4.11 5.50 30.59 0.17 -3.94 16 15 C 0.18 6.19 2.60 44.99 0.12 6.31 16 16 H 0.04 1.56 6.44 -2.38 -0.02 1.55 16 17 N -0.75 -33.31 4.93 -322.95 -1.59 -34.90 16 18 C -0.22 -12.41 10.41 84.03 0.87 -11.54 16 19 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 20 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 21 N -0.99 -62.75 13.97 21.65 0.30 -62.45 16 22 Si 0.95 44.90 27.74 68.60 1.90 46.80 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.25 -10.49 6.52 99.48 0.65 -9.85 16 26 C -0.13 -3.46 5.08 30.59 0.16 -3.30 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.71 6.23 -2.39 -0.01 1.70 16 30 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.14 3.35 7.45 -2.91 -0.02 3.33 16 33 H 0.41 10.58 5.77 -92.71 -0.53 10.05 16 34 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.45 7.60 -2.39 -0.02 1.44 16 38 H 0.06 1.88 8.14 -2.38 -0.02 1.87 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.37 15.56 5.66 -92.71 -0.52 15.04 16 41 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -71.82 342.54 2.86 -68.96 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.10 Total: 36.22 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.98 Total: -5.20 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -4.86 Total: -128.14 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.06 Total: -18.65 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -71.82 2.86 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980922956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.139 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds