Wall clock time and date at job start Tue Mar 31 2020 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35538 * 125.67576 * 2 1 4 4 C 1.35456 * 108.86924 * 179.82255 * 3 2 1 5 5 C 1.39834 * 107.86393 * 0.42709 * 4 3 2 6 6 C 1.37654 * 125.67930 * 180.29477 * 2 1 3 7 7 C 1.46679 * 126.23215 * 0.03125 * 6 2 1 8 8 O 1.21698 * 120.00037 * 4.97610 * 7 6 2 9 9 N 1.34773 * 119.99675 * 184.97678 * 7 6 2 10 10 C 1.46507 * 119.99929 * 185.07091 * 9 7 6 11 11 H 1.09004 * 109.46329 * 35.00155 * 10 9 7 12 12 C 1.53000 * 109.47084 * 275.00476 * 10 9 7 13 13 C 1.52996 * 109.46911 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47523 * 59.99577 * 13 12 10 15 15 C 1.53000 * 109.47373 * 300.00141 * 14 13 12 16 16 H 1.08999 * 109.47849 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47099 * 300.00206 * 15 14 13 18 18 C 1.36940 * 119.99556 * 274.99565 * 17 15 14 19 19 H 1.07997 * 120.00093 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99576 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00302 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99573 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47372 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46992 * 119.99818 * 22 20 18 25 25 H 1.48493 * 109.47378 * 239.99722 * 22 20 18 26 26 C 1.52995 * 109.46997 * 155.00075 * 10 9 7 27 27 H 1.08993 * 109.47664 * 264.13873 * 1 2 3 28 28 H 1.09001 * 109.46879 * 24.14574 * 1 2 3 29 29 H 1.09006 * 109.46298 * 144.13786 * 1 2 3 30 30 H 1.08002 * 125.56155 * 359.97438 * 3 2 1 31 31 H 1.08001 * 126.06155 * 180.13903 * 4 3 2 32 32 H 1.08002 * 126.45451 * 179.76671 * 5 4 3 33 33 H 0.97002 * 120.00365 * 5.07784 * 9 7 6 34 34 H 1.08998 * 109.46744 * 299.99790 * 12 10 9 35 35 H 1.08997 * 109.47163 * 59.99731 * 12 10 9 36 36 H 1.08995 * 109.47344 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47053 * 299.99837 * 13 12 10 38 38 H 1.09003 * 109.47445 * 59.99822 * 14 13 12 39 39 H 1.09002 * 109.47566 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00698 * 94.99451 * 17 15 14 41 41 H 0.97001 * 119.99743 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47363 * 300.00349 * 26 10 9 43 43 H 1.08998 * 109.47217 * 59.99973 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7094 0.0040 5 6 3.5780 -0.6887 -0.0034 6 6 2.2679 -1.1181 -0.0058 7 6 1.8125 -2.5124 -0.0136 8 8 0.6255 -2.7643 -0.1069 9 7 2.7086 -3.5145 0.0826 10 6 2.2667 -4.9062 -0.0367 11 1 1.4517 -4.9680 -0.7578 12 6 1.7815 -5.4058 1.3256 13 6 1.3207 -6.8594 1.2011 14 6 2.4889 -7.7260 0.7266 15 6 2.9741 -7.2264 -0.6357 16 1 3.8067 -7.8434 -0.9736 17 7 1.8788 -7.3100 -1.6050 18 6 1.6394 -8.4842 -2.2678 19 1 2.2576 -9.3485 -2.0757 20 6 0.6018 -8.5633 -3.1866 21 7 -0.1520 -7.5100 -3.4204 22 14 0.2756 -10.1647 -4.0913 23 1 1.2559 -11.1900 -3.6520 24 1 -1.1003 -10.6337 -3.7872 25 1 0.4114 -9.9438 -5.5534 26 6 3.4346 -5.7731 -0.5115 27 1 -0.3634 -0.1049 1.0222 28 1 -0.3633 0.9378 -0.4204 29 1 -0.3632 -0.8329 -0.6021 30 1 1.9081 2.1236 -0.0004 31 1 4.4132 1.3613 0.0071 32 1 4.4584 -1.3143 -0.0061 33 1 3.6461 -3.3143 0.2309 34 1 2.5965 -5.3439 2.0466 35 1 0.9495 -4.7882 1.6638 36 1 0.9745 -7.2152 2.1714 37 1 0.5057 -6.9217 0.4799 38 1 3.3039 -7.6637 1.4477 39 1 2.1607 -8.7617 0.6384 40 1 1.3232 -6.5338 -1.7773 41 1 -0.8767 -7.5652 -4.0628 42 1 3.7803 -5.4171 -1.4820 43 1 4.2497 -5.7112 0.2096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980922957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:04 Heat of formation + Delta-G solvation = 14.064012 kcal Electronic energy + Delta-G solvation = -23608.118149 eV Core-core repulsion = 20267.864800 eV Total energy + Delta-G solvation = -3340.253348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39891 -39.42813 -37.73408 -34.53386 -33.23355 -32.66140 -30.92180 -30.09990 -28.54238 -27.79989 -26.56204 -23.69744 -23.09250 -21.85183 -21.28843 -20.45464 -19.69687 -18.56253 -17.70876 -17.21149 -15.84426 -15.69608 -15.62010 -14.67573 -14.51297 -14.28648 -13.99387 -13.60105 -13.53332 -13.44651 -13.30602 -13.03577 -12.51895 -12.39894 -12.23663 -12.07803 -11.99063 -11.73422 -11.35133 -10.87477 -10.79802 -10.69475 -10.18335 -10.14737 -10.03574 -9.91382 -9.53137 -9.44934 -8.90346 -8.83690 -8.73931 -8.26926 -6.90374 -5.71035 -2.99970 1.49113 2.62013 2.66367 3.45658 3.47609 3.51569 3.51728 3.54043 4.63260 4.72058 4.81363 4.87695 5.16521 5.17808 5.26721 5.29382 5.32644 5.52903 5.57814 5.63947 5.74411 5.77308 5.88843 5.94119 5.94595 6.07338 6.13347 6.15890 6.23909 6.42197 6.48498 6.61755 6.66582 6.76732 6.84820 6.88916 6.90714 7.06276 7.11398 7.14878 7.70513 7.75405 8.39228 8.46959 9.58138 10.16094 10.50251 11.51302 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.003768 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.491232 B = 7428.372219 C = 7987.215991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.411 5.411 3 C 0.007 3.993 4 C -0.209 4.209 5 C -0.146 4.146 6 C -0.045 4.045 7 C 0.584 3.416 8 O -0.542 6.542 9 N -0.712 5.712 10 C 0.149 3.851 11 H 0.099 0.901 12 C -0.120 4.120 13 C -0.109 4.109 14 C -0.135 4.135 15 C 0.179 3.821 16 H 0.051 0.949 17 N -0.722 5.722 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.068 0.932 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 15.744 10.326 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.083 5.083 3 C -0.128 4.128 4 C -0.233 4.233 5 C -0.172 4.172 6 C -0.159 4.159 7 C 0.371 3.629 8 O -0.421 6.421 9 N -0.362 5.362 10 C 0.046 3.954 11 H 0.116 0.884 12 C -0.159 4.159 13 C -0.148 4.148 14 C -0.176 4.176 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.364 5.364 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.167 4.167 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.184 0.816 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.231 0.769 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.249 15.347 10.151 19.432 hybrid contribution -0.003 -0.379 -0.494 0.623 sum 6.246 14.967 9.656 18.875 Atomic orbital electron populations 1.22277 0.76035 1.04921 1.04259 1.43888 1.06900 1.05029 1.52509 1.21999 0.90780 0.91462 1.08556 1.20794 0.95926 0.95037 1.11585 1.21335 0.94466 0.95446 1.05980 1.20229 0.90434 0.87849 1.17387 1.17009 0.85884 0.83411 0.76623 1.90822 1.16093 1.84765 1.50424 1.45828 1.10713 1.06278 1.73368 1.21082 0.98455 0.77812 0.98064 0.88354 1.21844 1.00354 0.97345 0.96330 1.21356 0.99688 0.93155 1.00561 1.22176 0.97049 0.99992 0.98333 1.20150 0.91690 0.91801 0.89489 0.93060 1.42523 1.34889 1.12946 1.46077 1.19276 1.11337 0.90229 1.16049 0.91160 1.24731 0.98635 0.97251 1.00307 1.69680 1.21725 1.28275 1.38203 0.86166 0.77616 0.83163 0.79534 1.20619 1.21983 1.21997 1.22080 0.96553 0.97049 1.01029 0.90639 0.89973 0.87768 0.81624 0.84156 0.83942 0.76871 0.92775 0.92244 0.93316 0.90362 0.93862 0.92018 0.78054 0.93606 0.91307 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.49 59.85 0.63 1.32 16 2 N -0.41 -5.02 3.16 -120.23 -0.38 -5.40 16 3 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 4 C -0.21 -2.12 10.81 -39.98 -0.43 -2.55 16 5 C -0.15 -1.67 10.35 -39.12 -0.40 -2.07 16 6 C -0.04 -0.62 6.89 -81.98 -0.56 -1.19 16 7 C 0.58 9.43 7.73 -12.85 -0.10 9.33 16 8 O -0.54 -10.62 14.44 5.19 0.07 -10.55 16 9 N -0.71 -10.15 5.05 -55.11 -0.28 -10.43 16 10 C 0.15 2.49 2.24 -67.93 -0.15 2.34 16 11 H 0.10 2.08 6.02 -51.93 -0.31 1.77 16 12 C -0.12 -1.93 5.50 -26.73 -0.15 -2.07 16 13 C -0.11 -1.93 5.76 -26.74 -0.15 -2.08 16 14 C -0.14 -2.37 5.61 -26.73 -0.15 -2.52 16 15 C 0.18 3.45 3.10 -67.95 -0.21 3.24 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 N -0.72 -17.74 4.28 -53.45 -0.23 -17.97 16 18 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 22 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 C -0.13 -2.04 5.07 -26.76 -0.14 -2.17 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.10 1.36 6.54 -51.93 -0.34 1.02 16 30 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.14 1.29 7.49 -52.49 -0.39 0.90 16 33 H 0.40 4.40 7.55 -40.82 -0.31 4.10 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.66 7.60 -51.93 -0.39 1.27 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.38 10.23 6.06 -40.82 -0.25 9.99 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -33.17 346.01 -8.77 -41.93 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.61 Total: 13.13 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.26 Total: -5.71 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.16 Total: -61.55 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.17 -8.77 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980922957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.994 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds