Wall clock time and date at job start Tue Mar 31 2020 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35538 * 125.67576 * 2 1 4 4 C 1.35456 * 108.86924 * 179.82255 * 3 2 1 5 5 C 1.39834 * 107.86393 * 0.42709 * 4 3 2 6 6 C 1.37654 * 125.67930 * 180.29477 * 2 1 3 7 7 C 1.46679 * 126.23215 * 0.03125 * 6 2 1 8 8 O 1.21698 * 120.00037 * 4.97610 * 7 6 2 9 9 N 1.34773 * 119.99675 * 184.97678 * 7 6 2 10 10 C 1.46507 * 119.99929 * 185.07091 * 9 7 6 11 11 H 1.09004 * 109.46329 * 35.00155 * 10 9 7 12 12 C 1.53000 * 109.47084 * 275.00476 * 10 9 7 13 13 C 1.52996 * 109.46911 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47523 * 59.99577 * 13 12 10 15 15 C 1.53000 * 109.47373 * 300.00141 * 14 13 12 16 16 H 1.08999 * 109.47849 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47099 * 300.00206 * 15 14 13 18 18 C 1.36940 * 119.99556 * 274.99565 * 17 15 14 19 19 H 1.07997 * 120.00093 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99576 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00302 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99573 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47372 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46992 * 119.99818 * 22 20 18 25 25 H 1.48493 * 109.47378 * 239.99722 * 22 20 18 26 26 C 1.52995 * 109.46997 * 155.00075 * 10 9 7 27 27 H 1.08993 * 109.47664 * 264.13873 * 1 2 3 28 28 H 1.09001 * 109.46879 * 24.14574 * 1 2 3 29 29 H 1.09006 * 109.46298 * 144.13786 * 1 2 3 30 30 H 1.08002 * 125.56155 * 359.97438 * 3 2 1 31 31 H 1.08001 * 126.06155 * 180.13903 * 4 3 2 32 32 H 1.08002 * 126.45451 * 179.76671 * 5 4 3 33 33 H 0.97002 * 120.00365 * 5.07784 * 9 7 6 34 34 H 1.08998 * 109.46744 * 299.99790 * 12 10 9 35 35 H 1.08997 * 109.47163 * 59.99731 * 12 10 9 36 36 H 1.08995 * 109.47344 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47053 * 299.99837 * 13 12 10 38 38 H 1.09003 * 109.47445 * 59.99822 * 14 13 12 39 39 H 1.09002 * 109.47566 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00698 * 94.99451 * 17 15 14 41 41 H 0.97001 * 119.99743 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47363 * 300.00349 * 26 10 9 43 43 H 1.08998 * 109.47217 * 59.99973 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7094 0.0040 5 6 3.5780 -0.6887 -0.0034 6 6 2.2679 -1.1181 -0.0058 7 6 1.8125 -2.5124 -0.0136 8 8 0.6255 -2.7643 -0.1069 9 7 2.7086 -3.5145 0.0826 10 6 2.2667 -4.9062 -0.0367 11 1 1.4517 -4.9680 -0.7578 12 6 1.7815 -5.4058 1.3256 13 6 1.3207 -6.8594 1.2011 14 6 2.4889 -7.7260 0.7266 15 6 2.9741 -7.2264 -0.6357 16 1 3.8067 -7.8434 -0.9736 17 7 1.8788 -7.3100 -1.6050 18 6 1.6394 -8.4842 -2.2678 19 1 2.2576 -9.3485 -2.0757 20 6 0.6018 -8.5633 -3.1866 21 7 -0.1520 -7.5100 -3.4204 22 14 0.2756 -10.1647 -4.0913 23 1 1.2559 -11.1900 -3.6520 24 1 -1.1003 -10.6337 -3.7872 25 1 0.4114 -9.9438 -5.5534 26 6 3.4346 -5.7731 -0.5115 27 1 -0.3634 -0.1049 1.0222 28 1 -0.3633 0.9378 -0.4204 29 1 -0.3632 -0.8329 -0.6021 30 1 1.9081 2.1236 -0.0004 31 1 4.4132 1.3613 0.0071 32 1 4.4584 -1.3143 -0.0061 33 1 3.6461 -3.3143 0.2309 34 1 2.5965 -5.3439 2.0466 35 1 0.9495 -4.7882 1.6638 36 1 0.9745 -7.2152 2.1714 37 1 0.5057 -6.9217 0.4799 38 1 3.3039 -7.6637 1.4477 39 1 2.1607 -8.7617 0.6384 40 1 1.3232 -6.5338 -1.7773 41 1 -0.8767 -7.5652 -4.0628 42 1 3.7803 -5.4171 -1.4820 43 1 4.2497 -5.7112 0.2096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980922957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:04 Heat of formation + Delta-G solvation = -7.944133 kcal Electronic energy + Delta-G solvation = -23609.072493 eV Core-core repulsion = 20267.864800 eV Total energy + Delta-G solvation = -3341.207693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30047 -40.70875 -39.14001 -36.05957 -34.84331 -33.66007 -32.71259 -31.27687 -30.03999 -29.13863 -27.38492 -25.69760 -24.30526 -23.30281 -22.53082 -21.34498 -20.87774 -19.89290 -19.22188 -18.75144 -17.21061 -16.82691 -16.59640 -16.52020 -15.79458 -15.52271 -15.38308 -15.26502 -15.07366 -14.74069 -14.35592 -14.11012 -13.77514 -13.43534 -13.40863 -13.23064 -13.18020 -12.89747 -12.87697 -12.85399 -12.58287 -12.17264 -12.10223 -11.79725 -11.58148 -11.46471 -11.21130 -10.87783 -10.81447 -10.08472 -9.67476 -9.15151 -8.95182 -7.90362 -5.17989 0.50928 1.46315 1.47189 1.57065 1.71351 1.86163 2.38246 2.43153 2.58116 3.43297 3.71022 3.82480 3.93594 3.97949 4.09240 4.18047 4.21542 4.34359 4.36463 4.45615 4.50085 4.55058 4.58994 4.70348 4.72516 4.77254 4.81639 5.02373 5.10930 5.18168 5.20605 5.29578 5.31593 5.43821 5.46403 5.53896 5.63339 5.67758 5.85721 6.02687 6.31636 6.34616 6.59621 7.24394 7.37044 8.16625 8.37065 9.33560 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.003768 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.491232 B = 7428.372219 C = 7987.215991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.424 5.424 3 C 0.020 3.980 4 C -0.219 4.219 5 C -0.134 4.134 6 C -0.092 4.092 7 C 0.576 3.424 8 O -0.592 6.592 9 N -0.698 5.698 10 C 0.157 3.843 11 H 0.042 0.958 12 C -0.109 4.109 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.168 3.832 16 H 0.056 0.944 17 N -0.735 5.735 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.299 1.299 25 H -0.297 1.297 26 C -0.115 4.115 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.204 0.796 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.416 0.584 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.370 0.630 41 H 0.247 0.753 42 H 0.060 0.940 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.591 16.946 11.950 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.097 5.097 3 C -0.115 4.115 4 C -0.242 4.242 5 C -0.160 4.160 6 C -0.204 4.204 7 C 0.366 3.634 8 O -0.475 6.475 9 N -0.349 5.349 10 C 0.053 3.947 11 H 0.061 0.939 12 C -0.147 4.147 13 C -0.144 4.144 14 C -0.166 4.166 15 C 0.059 3.941 16 H 0.074 0.926 17 N -0.376 5.376 18 C -0.361 4.361 19 H 0.097 0.903 20 C -0.274 4.274 21 N -0.626 5.626 22 Si 0.799 3.201 23 H -0.186 1.186 24 H -0.227 1.227 25 H -0.224 1.224 26 C -0.154 4.154 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.221 0.779 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.253 0.747 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.202 0.798 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.416 16.525 11.818 22.392 hybrid contribution -0.881 -0.645 -0.933 1.436 sum 8.535 15.881 10.885 21.060 Atomic orbital electron populations 1.22276 0.75803 1.05311 1.04034 1.44129 1.07399 1.05339 1.52807 1.22751 0.90693 0.92338 1.05721 1.21219 0.97013 0.94697 1.11320 1.21734 0.93993 0.96641 1.03664 1.20084 0.91855 0.87005 1.21505 1.17500 0.85368 0.84863 0.75666 1.90798 1.18206 1.85626 1.52824 1.45569 1.11477 1.04985 1.72853 1.20757 0.97338 0.79473 0.97155 0.93932 1.21740 1.00830 0.95626 0.96544 1.21287 0.98423 0.94635 1.00062 1.22055 0.98032 0.98408 0.98073 1.20493 0.90124 0.94353 0.89123 0.92572 1.42769 1.36131 1.11575 1.47099 1.19712 1.10324 0.91248 1.14821 0.90267 1.25536 0.99267 1.00356 1.02192 1.69867 1.22699 1.30559 1.39475 0.85122 0.77269 0.79891 0.77829 1.18626 1.22662 1.22422 1.21962 0.97101 0.94251 1.02069 0.90414 0.86437 0.91251 0.77927 0.81355 0.81798 0.74669 0.89094 0.94112 0.91382 0.95384 0.89504 0.94004 0.79765 0.94466 0.92079 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 10.49 127.77 1.34 2.75 16 2 N -0.42 -9.97 3.16 -534.29 -1.69 -11.66 16 3 C 0.02 0.34 11.37 83.48 0.95 1.29 16 4 C -0.22 -3.68 10.81 22.01 0.24 -3.44 16 5 C -0.13 -2.73 10.35 22.57 0.23 -2.50 16 6 C -0.09 -2.50 6.89 40.35 0.28 -2.22 16 7 C 0.58 19.30 7.73 86.45 0.67 19.96 16 8 O -0.59 -25.12 14.44 -4.34 -0.06 -25.18 16 9 N -0.70 -19.66 5.05 -446.49 -2.26 -21.91 16 10 C 0.16 5.31 2.24 44.99 0.10 5.41 16 11 H 0.04 1.95 6.02 -2.38 -0.01 1.93 16 12 C -0.11 -3.42 5.50 30.59 0.17 -3.25 16 13 C -0.11 -3.72 5.76 30.59 0.18 -3.54 16 14 C -0.13 -4.20 5.61 30.59 0.17 -4.02 16 15 C 0.17 6.29 3.10 44.98 0.14 6.43 16 16 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 17 N -0.73 -37.25 4.28 -323.01 -1.38 -38.63 16 18 C -0.23 -12.81 9.93 84.03 0.83 -11.98 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 21 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 22 Si 0.97 47.57 29.55 68.60 2.03 49.59 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 26 C -0.12 -3.46 5.07 30.58 0.16 -3.31 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.12 1.54 8.12 -2.39 -0.02 1.52 16 29 H 0.07 1.98 6.54 -2.38 -0.02 1.96 16 30 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.16 2.43 7.49 -2.91 -0.02 2.41 16 33 H 0.42 8.31 7.55 -92.71 -0.70 7.62 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.03 1.25 7.60 -2.38 -0.02 1.23 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.37 20.94 6.06 -92.71 -0.56 20.38 16 41 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 43 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -78.17 346.01 2.60 -75.57 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.25 Total: 37.38 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.92 Total: -2.80 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -5.04 Total: -134.56 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.18 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.59 kcal Total: -78.17 2.60 -75.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980922957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.628 kcal (2) G-P(sol) polarization free energy of solvation -78.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds