Wall clock time and date at job start Tue Mar 31 2020 07:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36446 * 124.85521 * 2 1 4 4 C 1.34485 * 108.86008 * 179.97438 * 3 2 1 5 5 C 1.46686 * 106.32840 * 0.22719 * 4 3 2 6 6 C 1.47269 * 126.93597 * 179.75233 * 5 4 3 7 7 O 1.21628 * 119.99414 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00107 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99854 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47066 * 35.00023 * 9 8 6 11 11 C 1.53002 * 109.47235 * 275.00262 * 9 8 6 12 12 C 1.52997 * 109.46938 * 299.99956 * 11 9 8 13 13 C 1.53000 * 109.47310 * 300.00074 * 12 11 9 14 14 C 1.52992 * 109.47145 * 60.00204 * 13 12 11 15 15 H 1.08997 * 109.47572 * 59.99589 * 14 13 12 16 16 N 1.46497 * 109.47342 * 180.02562 * 14 13 12 17 17 C 1.36945 * 119.99682 * 275.00145 * 16 14 13 18 18 H 1.07997 * 120.00101 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99730 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99622 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47130 * 90.00079 * 21 19 17 23 23 H 1.48506 * 109.47499 * 210.00028 * 21 19 17 24 24 H 1.48498 * 109.47655 * 330.00387 * 21 19 17 25 25 C 1.53000 * 109.46947 * 155.00229 * 9 8 6 26 26 C 1.34665 * 124.85057 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46874 * 90.02500 * 1 2 3 28 28 H 1.09001 * 109.47071 * 210.02497 * 1 2 3 29 29 H 1.09001 * 109.46609 * 330.02116 * 1 2 3 30 30 H 1.08002 * 125.56718 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.83113 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00270 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.47072 * 60.00011 * 11 9 8 34 34 H 1.08994 * 109.46966 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47180 * 179.97438 * 12 11 9 36 36 H 1.09006 * 109.47060 * 60.00379 * 12 11 9 37 37 H 1.09004 * 109.46628 * 299.99877 * 13 12 11 38 38 H 1.09003 * 109.47082 * 180.02562 * 13 12 11 39 39 H 0.96993 * 120.00349 * 94.99361 * 16 14 13 40 40 H 0.96997 * 119.99464 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46628 * 179.97438 * 25 9 8 42 42 H 1.09002 * 109.47281 * 299.99709 * 25 9 8 43 43 H 1.07999 * 125.79969 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 0.0006 5 6 3.5461 -0.7177 -0.0046 6 6 4.7284 -1.5958 -0.0111 7 8 4.5884 -2.8040 -0.0155 8 7 5.9653 -1.0606 -0.0122 9 6 7.1414 -1.9342 -0.0181 10 1 6.9297 -2.8246 -0.6102 11 6 7.4793 -2.3443 1.4166 12 6 7.7765 -1.0946 2.2477 13 6 8.9639 -0.3470 1.6378 14 6 8.6260 0.0631 0.2031 15 1 7.7510 0.7130 0.2075 16 7 9.7633 0.7784 -0.3810 17 6 9.9075 2.1237 -0.1699 18 1 9.1828 2.6574 0.4269 19 6 10.9854 2.8014 -0.7230 20 7 11.8684 2.1510 -1.4507 21 14 11.1818 4.6366 -0.4356 22 1 11.9881 4.8621 0.7910 23 1 11.8702 5.2493 -1.6001 24 1 9.8432 5.2577 -0.2689 25 6 8.3289 -1.1867 -0.6280 26 6 2.2345 -1.1051 0.0005 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3632 0.8902 0.5135 30 1 1.8829 2.1373 -0.0004 31 1 4.3982 1.4017 0.0003 32 1 6.0769 -0.0971 -0.0084 33 1 6.6332 -2.8769 1.8511 34 1 8.3540 -2.9946 1.4122 35 1 8.0168 -1.3867 3.2700 36 1 6.9014 -0.4446 2.2521 37 1 9.8390 -0.9970 1.6335 38 1 9.1759 0.5431 2.2302 39 1 10.4141 0.2991 -0.9173 40 1 12.6217 2.6245 -1.8369 41 1 9.2040 -1.8365 -0.6319 42 1 8.0882 -0.8945 -1.6502 43 1 1.8767 -2.1241 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981016687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:08 Heat of formation + Delta-G solvation = 12.475467 kcal Electronic energy + Delta-G solvation = -23323.552476 eV Core-core repulsion = 19983.230244 eV Total energy + Delta-G solvation = -3340.322233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30906 -39.59444 -37.59022 -34.34326 -33.20887 -32.58965 -31.08562 -29.67907 -29.11770 -27.81423 -26.71377 -23.72947 -22.92735 -21.88395 -20.98167 -20.37164 -19.69174 -18.59432 -18.04477 -17.06439 -15.92193 -15.63197 -15.28866 -15.16806 -14.56198 -14.31369 -14.28131 -13.59165 -13.53188 -13.34685 -13.22614 -12.97860 -12.74126 -12.56045 -12.29774 -12.14812 -11.94128 -11.70645 -11.59074 -10.96312 -10.85343 -10.67651 -10.29347 -10.15514 -10.07972 -9.67740 -9.65954 -9.44656 -8.87549 -8.80280 -8.63268 -8.38486 -6.93018 -5.74577 -3.03027 1.78191 2.34894 2.63560 3.44333 3.49374 3.51106 3.64525 3.75006 4.41738 4.59838 4.75963 4.76251 4.85359 5.01201 5.08921 5.22693 5.29696 5.31864 5.40326 5.55971 5.68719 5.78893 5.81477 5.86314 5.95974 6.03599 6.08700 6.16990 6.21551 6.38622 6.40678 6.60110 6.64536 6.66124 6.80643 6.85061 6.92403 7.02452 7.06455 7.16505 7.71474 7.90879 8.44138 8.59279 9.55193 10.13681 10.48209 11.48176 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003912 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.944554 B = 7155.774542 C = 8360.486402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.165 4.165 5 C -0.230 4.230 6 C 0.590 3.410 7 O -0.563 6.563 8 N -0.712 5.712 9 C 0.153 3.847 10 H 0.083 0.917 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.136 4.136 14 C 0.181 3.819 15 H 0.042 0.958 16 N -0.725 5.725 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.133 4.133 26 C 0.069 3.931 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.403 0.597 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.537 -5.616 4.136 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.189 4.189 5 C -0.241 4.241 6 C 0.379 3.621 7 O -0.444 6.444 8 N -0.363 5.363 9 C 0.048 3.952 10 H 0.101 0.899 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.176 4.176 14 C 0.071 3.929 15 H 0.060 0.940 16 N -0.365 5.365 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.172 4.172 26 C -0.066 4.066 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.184 0.816 31 H 0.166 0.834 32 H 0.239 0.761 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.982 -6.232 4.142 23.220 hybrid contribution 0.476 1.464 0.029 1.540 sum -21.506 -4.767 4.172 22.420 Atomic orbital electron populations 1.22094 0.77079 1.04542 1.03462 1.43609 1.06659 1.05986 1.56380 1.21747 0.90604 0.91218 1.11088 1.22150 0.96353 0.93363 1.07052 1.20429 0.92656 0.93413 1.17555 1.17370 0.82525 0.86917 0.75295 1.90729 1.86783 1.14758 1.52128 1.45972 1.05010 1.10752 1.74598 1.20911 0.84437 0.93389 0.96490 0.89929 1.21891 1.01163 0.98003 0.95468 1.21501 0.99061 0.96626 0.98150 1.22272 0.96738 0.99543 0.99073 1.20144 0.91307 0.90890 0.90578 0.94029 1.42430 1.26879 1.06323 1.60884 1.19231 1.06706 0.84739 1.26119 0.91231 1.24731 0.97773 0.97936 1.00563 1.69660 1.14938 1.34980 1.38562 0.86222 0.77539 0.85501 0.77114 1.21807 1.21850 1.20790 1.22123 0.96808 0.98290 0.99974 1.21745 0.89870 0.91625 1.03346 0.90731 0.89704 0.89663 0.81648 0.83442 0.76117 0.92118 0.91335 0.93007 0.92511 0.92635 0.92184 0.78278 0.93560 0.90648 0.91271 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.04 59.85 0.66 0.97 16 2 N -0.45 -4.00 3.09 -124.53 -0.38 -4.39 16 3 C -0.02 -0.20 11.34 -16.83 -0.19 -0.39 16 4 C -0.17 -1.93 10.56 -37.50 -0.40 -2.33 16 5 C -0.23 -3.10 6.29 -103.35 -0.65 -3.75 16 6 C 0.59 9.28 7.77 -12.59 -0.10 9.18 16 7 O -0.56 -10.35 16.57 5.25 0.09 -10.27 16 8 N -0.71 -10.54 4.23 -54.93 -0.23 -10.77 16 9 C 0.15 2.31 2.78 -67.93 -0.19 2.12 16 10 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 11 C -0.13 -1.84 5.60 -26.73 -0.15 -1.99 16 12 C -0.12 -1.72 5.77 -26.73 -0.15 -1.87 16 13 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 14 C 0.18 3.47 2.60 -67.93 -0.18 3.29 16 15 H 0.04 0.80 6.44 -51.93 -0.33 0.46 16 16 N -0.72 -17.78 5.12 -53.43 -0.27 -18.05 16 17 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 21 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.13 -2.21 5.08 -26.73 -0.14 -2.34 16 26 C 0.07 0.78 11.12 -16.84 -0.19 0.59 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 29 H 0.08 0.25 8.13 -51.93 -0.42 -0.18 16 30 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.15 1.61 7.70 -52.49 -0.40 1.21 16 32 H 0.40 5.73 5.99 -40.82 -0.24 5.49 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -33.35 350.57 -8.59 -41.93 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.71 Total: 12.57 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.06 Total: -6.18 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.17 Total: -60.53 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.35 -8.59 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981016687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.408 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds