Wall clock time and date at job start Tue Mar 31 2020 07:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36446 * 124.85521 * 2 1 4 4 C 1.34485 * 108.86008 * 179.97438 * 3 2 1 5 5 C 1.46686 * 106.32840 * 0.22719 * 4 3 2 6 6 C 1.47269 * 126.93597 * 179.75233 * 5 4 3 7 7 O 1.21628 * 119.99414 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00107 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99854 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47066 * 35.00023 * 9 8 6 11 11 C 1.53002 * 109.47235 * 275.00262 * 9 8 6 12 12 C 1.52997 * 109.46938 * 299.99956 * 11 9 8 13 13 C 1.53000 * 109.47310 * 300.00074 * 12 11 9 14 14 C 1.52992 * 109.47145 * 60.00204 * 13 12 11 15 15 H 1.08997 * 109.47572 * 59.99589 * 14 13 12 16 16 N 1.46497 * 109.47342 * 180.02562 * 14 13 12 17 17 C 1.36945 * 119.99682 * 275.00145 * 16 14 13 18 18 H 1.07997 * 120.00101 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99730 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99622 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47130 * 90.00079 * 21 19 17 23 23 H 1.48506 * 109.47499 * 210.00028 * 21 19 17 24 24 H 1.48498 * 109.47655 * 330.00387 * 21 19 17 25 25 C 1.53000 * 109.46947 * 155.00229 * 9 8 6 26 26 C 1.34665 * 124.85057 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46874 * 90.02500 * 1 2 3 28 28 H 1.09001 * 109.47071 * 210.02497 * 1 2 3 29 29 H 1.09001 * 109.46609 * 330.02116 * 1 2 3 30 30 H 1.08002 * 125.56718 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.83113 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00270 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.47072 * 60.00011 * 11 9 8 34 34 H 1.08994 * 109.46966 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47180 * 179.97438 * 12 11 9 36 36 H 1.09006 * 109.47060 * 60.00379 * 12 11 9 37 37 H 1.09004 * 109.46628 * 299.99877 * 13 12 11 38 38 H 1.09003 * 109.47082 * 180.02562 * 13 12 11 39 39 H 0.96993 * 120.00349 * 94.99361 * 16 14 13 40 40 H 0.96997 * 119.99464 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46628 * 179.97438 * 25 9 8 42 42 H 1.09002 * 109.47281 * 299.99709 * 25 9 8 43 43 H 1.07999 * 125.79969 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 0.0006 5 6 3.5461 -0.7177 -0.0046 6 6 4.7284 -1.5958 -0.0111 7 8 4.5884 -2.8040 -0.0155 8 7 5.9653 -1.0606 -0.0122 9 6 7.1414 -1.9342 -0.0181 10 1 6.9297 -2.8246 -0.6102 11 6 7.4793 -2.3443 1.4166 12 6 7.7765 -1.0946 2.2477 13 6 8.9639 -0.3470 1.6378 14 6 8.6260 0.0631 0.2031 15 1 7.7510 0.7130 0.2075 16 7 9.7633 0.7784 -0.3810 17 6 9.9075 2.1237 -0.1699 18 1 9.1828 2.6574 0.4269 19 6 10.9854 2.8014 -0.7230 20 7 11.8684 2.1510 -1.4507 21 14 11.1818 4.6366 -0.4356 22 1 11.9881 4.8621 0.7910 23 1 11.8702 5.2493 -1.6001 24 1 9.8432 5.2577 -0.2689 25 6 8.3289 -1.1867 -0.6280 26 6 2.2345 -1.1051 0.0005 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3632 0.8902 0.5135 30 1 1.8829 2.1373 -0.0004 31 1 4.3982 1.4017 0.0003 32 1 6.0769 -0.0971 -0.0084 33 1 6.6332 -2.8769 1.8511 34 1 8.3540 -2.9946 1.4122 35 1 8.0168 -1.3867 3.2700 36 1 6.9014 -0.4446 2.2521 37 1 9.8390 -0.9970 1.6335 38 1 9.1759 0.5431 2.2302 39 1 10.4141 0.2991 -0.9173 40 1 12.6217 2.6245 -1.8369 41 1 9.2040 -1.8365 -0.6319 42 1 8.0882 -0.8945 -1.6502 43 1 1.8767 -2.1241 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981016687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:07 Heat of formation + Delta-G solvation = -8.310552 kcal Electronic energy + Delta-G solvation = -23324.453826 eV Core-core repulsion = 19983.230244 eV Total energy + Delta-G solvation = -3341.223582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.11705 -40.84063 -38.95277 -36.08440 -34.43299 -33.56163 -32.85446 -30.93042 -30.02710 -29.46854 -27.36782 -25.66709 -24.02363 -23.17907 -22.45851 -21.29643 -20.65065 -19.95540 -19.18934 -18.75654 -17.14922 -16.61063 -16.49182 -16.33472 -16.13173 -15.63748 -15.31589 -15.02377 -14.96325 -14.72184 -14.41654 -13.90386 -13.86449 -13.50854 -13.26754 -13.12467 -13.03768 -12.98031 -12.88973 -12.82450 -12.74372 -12.20795 -12.02785 -11.92932 -11.56864 -11.43026 -10.97495 -10.89598 -10.80946 -9.99098 -9.47953 -9.25335 -8.96098 -7.90058 -5.17984 0.82359 1.49699 1.50993 1.54565 1.59153 1.96475 2.53068 2.59173 2.65167 3.43316 3.68763 3.90538 3.96344 4.00857 4.05236 4.11326 4.30236 4.33206 4.39062 4.40296 4.49454 4.58276 4.62451 4.70580 4.75505 4.76778 4.84392 4.98563 5.04868 5.11197 5.18127 5.22437 5.25413 5.40029 5.53412 5.55506 5.60736 5.71452 5.79689 6.10282 6.32178 6.38341 6.72944 7.38240 7.40178 8.14763 8.37761 9.33635 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003912 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.944554 B = 7155.774542 C = 8360.486402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.190 4.190 5 C -0.267 4.267 6 C 0.588 3.412 7 O -0.597 6.597 8 N -0.709 5.709 9 C 0.159 3.841 10 H 0.079 0.921 11 C -0.120 4.120 12 C -0.104 4.104 13 C -0.126 4.126 14 C 0.178 3.822 15 H 0.044 0.956 16 N -0.737 5.737 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.267 1.267 25 C -0.120 4.120 26 C 0.070 3.930 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.199 0.801 31 H 0.146 0.854 32 H 0.405 0.595 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.038 -4.909 5.079 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.118 5.118 3 C -0.136 4.136 4 C -0.214 4.214 5 C -0.278 4.278 6 C 0.378 3.622 7 O -0.481 6.481 8 N -0.360 5.360 9 C 0.054 3.946 10 H 0.097 0.903 11 C -0.159 4.159 12 C -0.142 4.142 13 C -0.166 4.166 14 C 0.070 3.930 15 H 0.062 0.938 16 N -0.376 5.376 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.798 3.202 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.192 1.192 25 C -0.159 4.159 26 C -0.067 4.067 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.215 0.785 31 H 0.164 0.836 32 H 0.241 0.759 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -24.548 -5.513 5.118 25.675 hybrid contribution 1.119 1.216 -0.255 1.672 sum -23.429 -4.297 4.862 24.311 Atomic orbital electron populations 1.22451 0.74149 1.06365 1.04880 1.43929 1.08388 1.05057 1.54406 1.22230 0.89961 0.92633 1.08798 1.22259 0.97670 0.92610 1.08827 1.20428 0.92697 0.94145 1.20494 1.17743 0.83181 0.86807 0.74438 1.90694 1.87241 1.16160 1.53976 1.45930 1.04875 1.10730 1.74438 1.20806 0.83908 0.93009 0.96920 0.90284 1.21840 1.01584 0.97872 0.94580 1.21397 0.97597 0.96380 0.98833 1.22093 0.97828 0.99011 0.97695 1.20340 0.89576 0.91536 0.91536 0.93837 1.42636 1.27976 1.05891 1.61117 1.19616 1.06186 0.86003 1.24711 0.90538 1.25516 0.98033 1.02129 1.01279 1.69819 1.15638 1.36438 1.40330 0.85200 0.77857 0.80671 0.76427 1.21736 1.22534 1.19195 1.21963 0.97635 0.97248 0.99066 1.21931 0.89589 0.92778 1.02388 0.89463 0.88340 0.87547 0.78450 0.83583 0.75853 0.92156 0.90228 0.91319 0.92346 0.93220 0.93933 0.79658 0.94217 0.90334 0.92190 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 11.04 127.77 1.41 1.74 16 2 N -0.44 -6.72 3.09 -547.90 -1.69 -8.41 16 3 C -0.01 -0.15 11.34 83.12 0.94 0.79 16 4 C -0.19 -4.26 10.56 23.62 0.25 -4.01 16 5 C -0.27 -7.08 6.29 -19.04 -0.12 -7.20 16 6 C 0.59 18.51 7.77 86.62 0.67 19.19 16 7 O -0.60 -22.10 16.57 -4.12 -0.07 -22.16 16 8 N -0.71 -20.91 4.23 -445.94 -1.89 -22.79 16 9 C 0.16 4.74 2.78 44.99 0.13 4.87 16 10 H 0.08 2.47 7.58 -2.39 -0.02 2.45 16 11 C -0.12 -3.33 5.60 30.59 0.17 -3.16 16 12 C -0.10 -2.95 5.77 30.59 0.18 -2.77 16 13 C -0.13 -4.42 5.50 30.59 0.17 -4.25 16 14 C 0.18 6.82 2.60 44.99 0.12 6.94 16 15 H 0.04 1.66 6.44 -2.39 -0.02 1.64 16 16 N -0.74 -36.54 5.12 -322.95 -1.65 -38.19 16 17 C -0.23 -12.73 9.93 84.03 0.83 -11.89 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 20 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 21 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.12 -3.99 5.08 30.60 0.16 -3.83 16 26 C 0.07 1.49 11.12 83.91 0.93 2.42 16 27 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.10 0.30 8.13 -2.39 -0.02 0.28 16 29 H 0.11 0.17 8.13 -2.39 -0.02 0.15 16 30 H 0.20 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.15 3.15 7.70 -2.91 -0.02 3.12 16 32 H 0.40 11.52 5.99 -92.71 -0.56 10.96 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.65 7.60 -2.38 -0.02 1.64 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -72.22 350.57 3.05 -69.17 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.27 Total: 38.83 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 6.30 Total: -5.15 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -4.95 Total: -128.59 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.22 3.05 -69.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981016687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.856 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds