Wall clock time and date at job start Tue Mar 31 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36451 * 124.85327 * 2 1 4 4 C 1.34485 * 108.85654 * 179.97438 * 3 2 1 5 5 C 1.46690 * 106.33515 * 359.97438 * 4 3 2 6 6 C 1.47253 * 126.94025 * 180.02562 * 5 4 3 7 7 O 1.21628 * 119.99863 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00514 * 359.97438 * 6 5 4 9 9 C 1.46493 * 120.00222 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47484 * 34.99740 * 9 8 6 11 11 C 1.53004 * 109.47224 * 274.99704 * 9 8 6 12 12 C 1.53001 * 109.47332 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47036 * 60.00202 * 12 11 9 14 14 C 1.53001 * 109.47180 * 299.99831 * 13 12 11 15 15 H 1.09000 * 109.46968 * 300.00072 * 14 13 12 16 16 N 1.46497 * 109.47048 * 180.02562 * 14 13 12 17 17 C 1.36937 * 120.00142 * 85.00323 * 16 14 13 18 18 H 1.07998 * 120.00096 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00139 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99881 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00299 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47114 * 89.99870 * 21 19 17 23 23 H 1.48501 * 109.47203 * 210.00333 * 21 19 17 24 24 H 1.48499 * 109.46858 * 330.00087 * 21 19 17 25 25 C 1.53001 * 109.46998 * 60.00146 * 14 13 12 26 26 C 1.34657 * 124.85080 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47180 * 90.02496 * 1 2 3 28 28 H 1.08999 * 109.47409 * 210.02203 * 1 2 3 29 29 H 1.09003 * 109.47301 * 330.02579 * 1 2 3 30 30 H 1.08004 * 125.56695 * 0.26453 * 3 2 1 31 31 H 1.07996 * 126.82899 * 179.97438 * 4 3 2 32 32 H 0.96998 * 119.99773 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.46919 * 300.00381 * 11 9 8 34 34 H 1.09000 * 109.47201 * 59.99779 * 11 9 8 35 35 H 1.09000 * 109.46808 * 299.99882 * 12 11 9 36 36 H 1.09007 * 109.46702 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.47153 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.47229 * 59.99743 * 13 12 11 39 39 H 0.96999 * 119.99831 * 264.99784 * 16 14 13 40 40 H 0.96995 * 120.00162 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.46873 * 180.02562 * 25 14 13 42 42 H 1.09000 * 109.47321 * 60.00143 * 25 14 13 43 43 H 1.08006 * 125.80448 * 359.95321 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0016 6 6 4.7283 -1.5957 0.0030 7 8 4.5885 -2.8039 0.0042 8 7 5.9653 -1.0606 0.0030 9 6 7.1413 -1.9341 0.0038 10 1 6.9312 -2.8270 -0.5851 11 6 7.4755 -2.3382 1.4412 12 6 8.7041 -3.2501 1.4421 13 6 9.8929 -2.5045 0.8326 14 6 9.5589 -2.1004 -0.6048 15 1 9.3492 -2.9933 -1.1938 16 7 10.6975 -1.3871 -1.1887 17 6 11.7233 -2.0888 -1.7636 18 1 11.6931 -3.1681 -1.7863 19 6 12.8019 -1.4129 -2.3174 20 7 12.8389 -0.0975 -2.2893 21 14 14.2015 -2.3701 -3.1010 22 1 13.9117 -2.5799 -4.5422 23 1 15.4662 -1.6051 -2.9566 24 1 14.3394 -3.6861 -2.4271 25 6 8.3303 -1.1886 -0.6058 26 6 2.2345 -1.1051 0.0005 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.8828 2.1373 0.0041 31 1 4.3980 1.4017 0.0003 32 1 6.0769 -0.0971 0.0016 33 1 7.6856 -1.4454 2.0301 34 1 6.6284 -2.8689 1.8757 35 1 8.4943 -4.1429 0.8532 36 1 8.9418 -3.5383 2.4662 37 1 10.7683 -3.1539 0.8337 38 1 10.1026 -1.6116 1.4215 39 1 10.7247 -0.4177 -1.1681 40 1 13.5923 0.3749 -2.6765 41 1 8.0920 -0.9012 -1.6298 42 1 8.5399 -0.2958 -0.0168 43 1 1.8767 -2.1241 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981016689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:16 Heat of formation + Delta-G solvation = 9.605732 kcal Electronic energy + Delta-G solvation = -22752.740773 eV Core-core repulsion = 19412.294099 eV Total energy + Delta-G solvation = -3340.446674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40301 -39.44890 -37.65514 -34.51153 -33.37801 -32.83968 -31.05563 -29.59944 -29.10247 -27.75851 -26.72215 -23.73095 -23.00095 -21.78992 -20.92557 -20.14410 -19.89480 -19.15246 -18.04563 -16.97634 -15.95634 -15.79800 -15.71041 -14.76184 -14.53349 -14.34304 -14.20090 -13.68812 -13.53738 -13.41819 -13.33077 -13.04395 -12.84124 -12.66196 -12.50177 -12.23982 -12.00357 -11.93888 -10.93533 -10.84767 -10.80880 -10.62598 -10.24760 -10.19793 -10.08191 -9.96384 -9.62191 -9.47650 -8.91980 -8.82958 -8.72875 -8.48462 -6.90591 -5.72193 -3.00315 1.69478 2.23132 2.54119 3.46998 3.51016 3.53138 3.54442 3.66270 4.33995 4.62934 4.65624 4.69035 4.75793 4.94586 5.04077 5.17236 5.25256 5.27532 5.44966 5.57956 5.69532 5.71056 5.79179 5.82471 5.92156 5.99525 6.07764 6.14279 6.24431 6.41682 6.48512 6.53149 6.61737 6.65439 6.76292 6.80968 6.85918 6.96454 7.05165 7.20685 7.75505 7.80486 8.46840 8.51111 9.57839 10.16001 10.50891 11.50706 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.002824 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.714063 B = 9912.805769 C =10434.659465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.168 4.168 5 C -0.231 4.231 6 C 0.590 3.410 7 O -0.557 6.557 8 N -0.719 5.719 9 C 0.150 3.850 10 H 0.086 0.914 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.136 4.136 14 C 0.183 3.817 15 H 0.048 0.952 16 N -0.725 5.725 17 C -0.234 4.234 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.129 4.129 26 C 0.071 3.929 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.398 0.602 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.244 2.697 7.404 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.192 4.192 5 C -0.241 4.241 6 C 0.378 3.622 7 O -0.437 6.437 8 N -0.368 5.368 9 C 0.046 3.954 10 H 0.104 0.896 11 C -0.162 4.162 12 C -0.153 4.153 13 C -0.177 4.177 14 C 0.073 3.927 15 H 0.066 0.934 16 N -0.365 5.365 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.168 4.168 26 C -0.064 4.064 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.164 0.836 32 H 0.232 0.768 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -25.560 1.750 7.312 26.643 hybrid contribution 0.864 0.471 -0.406 1.065 sum -24.696 2.221 6.906 25.739 Atomic orbital electron populations 1.22110 0.76976 1.04606 1.03549 1.43616 1.06728 1.05969 1.56249 1.21740 0.90607 0.91242 1.11031 1.22088 0.96252 0.93308 1.07546 1.20438 0.92687 0.93385 1.17586 1.17367 0.82445 0.86990 0.75377 1.90755 1.86660 1.14731 1.51543 1.45924 1.05356 1.10347 1.75162 1.20984 0.83857 0.93840 0.96730 0.89559 1.21880 0.98101 0.99815 0.96403 1.21487 0.95069 0.98396 1.00366 1.22279 0.96859 0.99781 0.98734 1.20102 0.86529 0.94004 0.92081 0.93384 1.42408 1.19602 1.05901 1.68573 1.19255 0.97295 0.90969 1.29052 0.91158 1.24733 0.98865 0.95546 1.01989 1.69660 1.32058 1.05608 1.51012 0.86203 0.82043 0.78790 0.79268 1.21783 1.21857 1.20775 1.22081 0.94431 0.99349 1.00905 1.21784 0.89872 0.91705 1.03059 0.90660 0.89622 0.89634 0.81672 0.83584 0.76779 0.92157 0.92199 0.92216 0.92619 0.91982 0.92699 0.78352 0.93601 0.91357 0.91776 0.80898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.03 59.84 0.66 0.91 16 2 N -0.45 -3.52 3.09 -124.52 -0.38 -3.91 16 3 C -0.02 -0.16 11.34 -16.82 -0.19 -0.35 16 4 C -0.17 -1.66 10.56 -37.50 -0.40 -2.05 16 5 C -0.23 -2.85 6.29 -103.35 -0.65 -3.50 16 6 C 0.59 8.86 7.77 -12.60 -0.10 8.76 16 7 O -0.56 -10.20 16.58 5.25 0.09 -10.11 16 8 N -0.72 -9.82 5.07 -54.94 -0.28 -10.10 16 9 C 0.15 2.30 2.46 -67.93 -0.17 2.14 16 10 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 11 C -0.12 -1.81 5.49 -26.73 -0.15 -1.96 16 12 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 13 C -0.14 -2.49 5.50 -26.73 -0.15 -2.63 16 14 C 0.18 3.69 2.77 -67.93 -0.19 3.50 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 N -0.72 -18.23 5.12 -53.43 -0.27 -18.51 16 17 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 21 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.13 -2.16 4.86 -26.73 -0.13 -2.29 16 26 C 0.07 0.74 11.12 -16.84 -0.19 0.55 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.08 0.16 8.13 -51.93 -0.42 -0.26 16 30 H 0.17 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.15 1.19 7.70 -52.49 -0.40 0.79 16 32 H 0.40 4.56 7.72 -40.82 -0.32 4.24 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -34.33 355.00 -8.73 -43.07 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.89 Total: 10.34 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.04 Total: -6.10 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.21 Total: -60.20 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.33 -8.73 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981016689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.673 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds