Wall clock time and date at job start Tue Mar 31 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36451 * 124.85327 * 2 1 4 4 C 1.34485 * 108.85654 * 179.97438 * 3 2 1 5 5 C 1.46690 * 106.33515 * 359.97438 * 4 3 2 6 6 C 1.47253 * 126.94025 * 180.02562 * 5 4 3 7 7 O 1.21628 * 119.99863 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00514 * 359.97438 * 6 5 4 9 9 C 1.46493 * 120.00222 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47484 * 34.99740 * 9 8 6 11 11 C 1.53004 * 109.47224 * 274.99704 * 9 8 6 12 12 C 1.53001 * 109.47332 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47036 * 60.00202 * 12 11 9 14 14 C 1.53001 * 109.47180 * 299.99831 * 13 12 11 15 15 H 1.09000 * 109.46968 * 300.00072 * 14 13 12 16 16 N 1.46497 * 109.47048 * 180.02562 * 14 13 12 17 17 C 1.36937 * 120.00142 * 85.00323 * 16 14 13 18 18 H 1.07998 * 120.00096 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00139 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99881 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00299 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47114 * 89.99870 * 21 19 17 23 23 H 1.48501 * 109.47203 * 210.00333 * 21 19 17 24 24 H 1.48499 * 109.46858 * 330.00087 * 21 19 17 25 25 C 1.53001 * 109.46998 * 60.00146 * 14 13 12 26 26 C 1.34657 * 124.85080 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47180 * 90.02496 * 1 2 3 28 28 H 1.08999 * 109.47409 * 210.02203 * 1 2 3 29 29 H 1.09003 * 109.47301 * 330.02579 * 1 2 3 30 30 H 1.08004 * 125.56695 * 0.26453 * 3 2 1 31 31 H 1.07996 * 126.82899 * 179.97438 * 4 3 2 32 32 H 0.96998 * 119.99773 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.46919 * 300.00381 * 11 9 8 34 34 H 1.09000 * 109.47201 * 59.99779 * 11 9 8 35 35 H 1.09000 * 109.46808 * 299.99882 * 12 11 9 36 36 H 1.09007 * 109.46702 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.47153 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.47229 * 59.99743 * 13 12 11 39 39 H 0.96999 * 119.99831 * 264.99784 * 16 14 13 40 40 H 0.96995 * 120.00162 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.46873 * 180.02562 * 25 14 13 42 42 H 1.09000 * 109.47321 * 60.00143 * 25 14 13 43 43 H 1.08006 * 125.80448 * 359.95321 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0016 6 6 4.7283 -1.5957 0.0030 7 8 4.5885 -2.8039 0.0042 8 7 5.9653 -1.0606 0.0030 9 6 7.1413 -1.9341 0.0038 10 1 6.9312 -2.8270 -0.5851 11 6 7.4755 -2.3382 1.4412 12 6 8.7041 -3.2501 1.4421 13 6 9.8929 -2.5045 0.8326 14 6 9.5589 -2.1004 -0.6048 15 1 9.3492 -2.9933 -1.1938 16 7 10.6975 -1.3871 -1.1887 17 6 11.7233 -2.0888 -1.7636 18 1 11.6931 -3.1681 -1.7863 19 6 12.8019 -1.4129 -2.3174 20 7 12.8389 -0.0975 -2.2893 21 14 14.2015 -2.3701 -3.1010 22 1 13.9117 -2.5799 -4.5422 23 1 15.4662 -1.6051 -2.9566 24 1 14.3394 -3.6861 -2.4271 25 6 8.3303 -1.1886 -0.6058 26 6 2.2345 -1.1051 0.0005 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.8828 2.1373 0.0041 31 1 4.3980 1.4017 0.0003 32 1 6.0769 -0.0971 0.0016 33 1 7.6856 -1.4454 2.0301 34 1 6.6284 -2.8689 1.8757 35 1 8.4943 -4.1429 0.8532 36 1 8.9418 -3.5383 2.4662 37 1 10.7683 -3.1539 0.8337 38 1 10.1026 -1.6116 1.4215 39 1 10.7247 -0.4177 -1.1681 40 1 13.5923 0.3749 -2.6765 41 1 8.0920 -0.9012 -1.6298 42 1 8.5399 -0.2958 -0.0168 43 1 1.8767 -2.1241 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981016689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:15 Heat of formation + Delta-G solvation = -12.702907 kcal Electronic energy + Delta-G solvation = -22753.708148 eV Core-core repulsion = 19412.294099 eV Total energy + Delta-G solvation = -3341.414049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10802 -40.66588 -39.04676 -36.17791 -34.78816 -33.60816 -32.89382 -30.77120 -30.02793 -29.37808 -27.33709 -25.69686 -24.08837 -23.14117 -22.17233 -21.13861 -20.92488 -20.37902 -19.21941 -18.66579 -17.32899 -16.78198 -16.36949 -16.30913 -15.88557 -15.57901 -15.34830 -15.12475 -14.96378 -14.84651 -14.42337 -14.11843 -13.88774 -13.57156 -13.38825 -13.26246 -13.03325 -12.92575 -12.87760 -12.80837 -12.24515 -12.13604 -12.02994 -11.95349 -11.62379 -11.46789 -11.35967 -10.87123 -10.80965 -10.03470 -9.48231 -9.25928 -8.98588 -7.92525 -5.20360 0.80480 1.47938 1.49315 1.55694 1.57640 1.94278 2.44911 2.58997 2.63266 3.40605 3.65696 3.89358 3.98036 4.03220 4.06935 4.11092 4.25751 4.33220 4.36902 4.48355 4.49464 4.55672 4.59461 4.62612 4.70586 4.76746 4.77989 5.03795 5.04998 5.11676 5.18321 5.21875 5.24071 5.37588 5.51544 5.52851 5.58468 5.68761 5.79982 6.09980 6.30290 6.38145 6.73160 7.36292 7.39403 8.11958 8.36317 9.31001 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.002824 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.714063 B = 9912.805769 C =10434.659465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.010 4.010 4 C -0.186 4.186 5 C -0.267 4.267 6 C 0.586 3.414 7 O -0.599 6.599 8 N -0.710 5.710 9 C 0.160 3.840 10 H 0.065 0.935 11 C -0.115 4.115 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.178 3.822 15 H 0.035 0.965 16 N -0.736 5.736 17 C -0.236 4.236 18 H 0.072 0.928 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.970 3.030 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.271 1.271 25 C -0.113 4.113 26 C 0.067 3.933 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.201 0.799 31 H 0.157 0.843 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.135 3.309 8.185 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.137 4.137 4 C -0.210 4.210 5 C -0.278 4.278 6 C 0.377 3.623 7 O -0.482 6.482 8 N -0.360 5.360 9 C 0.054 3.946 10 H 0.084 0.916 11 C -0.153 4.153 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.069 3.931 15 H 0.054 0.946 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.196 1.196 25 C -0.152 4.152 26 C -0.071 4.071 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.218 0.782 31 H 0.175 0.825 32 H 0.246 0.754 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -27.501 2.366 8.113 28.770 hybrid contribution 1.305 0.289 -0.642 1.483 sum -26.196 2.655 7.471 27.369 Atomic orbital electron populations 1.22450 0.74249 1.06357 1.04852 1.43934 1.08372 1.05136 1.54366 1.22298 0.90021 0.92599 1.08734 1.22306 0.97842 0.92161 1.08647 1.20400 0.92349 0.94473 1.20544 1.17820 0.83279 0.86836 0.74393 1.90718 1.87239 1.16562 1.53729 1.45770 1.04651 1.10761 1.74821 1.20728 0.83838 0.93111 0.96887 0.91649 1.21801 0.97620 1.00146 0.95781 1.21415 0.93818 0.97955 1.01257 1.22084 0.97454 0.99679 0.97352 1.20298 0.86339 0.93811 0.92674 0.94648 1.42575 1.20437 1.05563 1.68941 1.19590 0.97840 0.91278 1.28102 0.90985 1.25512 1.01476 0.96484 1.03374 1.69806 1.32702 1.07008 1.52493 0.85190 0.78813 0.77823 0.78272 1.21554 1.22142 1.19606 1.21865 0.93484 0.99067 1.00811 1.21917 0.89813 0.92766 1.02572 0.89529 0.88562 0.87351 0.78207 0.82518 0.75373 0.90883 0.92274 0.92389 0.90484 0.93865 0.92738 0.79439 0.94074 0.92281 0.90662 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 11.03 127.77 1.41 1.65 16 2 N -0.44 -5.85 3.09 -547.88 -1.69 -7.54 16 3 C -0.01 -0.13 11.34 83.12 0.94 0.82 16 4 C -0.19 -3.38 10.56 23.62 0.25 -3.13 16 5 C -0.27 -6.48 6.29 -19.04 -0.12 -6.60 16 6 C 0.59 17.77 7.77 86.61 0.67 18.44 16 7 O -0.60 -22.50 16.58 -4.12 -0.07 -22.57 16 8 N -0.71 -19.25 5.07 -445.96 -2.26 -21.51 16 9 C 0.16 4.87 2.46 44.99 0.11 4.98 16 10 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 11 C -0.11 -3.24 5.49 30.60 0.17 -3.07 16 12 C -0.11 -3.10 5.92 30.59 0.18 -2.92 16 13 C -0.13 -4.54 5.50 30.59 0.17 -4.38 16 14 C 0.18 7.21 2.77 44.99 0.12 7.33 16 15 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 16 N -0.74 -37.60 5.12 -322.94 -1.65 -39.25 16 17 C -0.24 -13.35 9.93 84.03 0.83 -12.52 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 20 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 21 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 C -0.11 -3.80 4.86 30.59 0.15 -3.65 16 26 C 0.07 1.32 11.12 83.92 0.93 2.25 16 27 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 28 H 0.10 0.20 8.13 -2.39 -0.02 0.19 16 29 H 0.11 -0.02 8.13 -2.39 -0.02 -0.04 16 30 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.16 2.32 7.70 -2.91 -0.02 2.29 16 32 H 0.41 9.08 7.72 -92.71 -0.72 8.37 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.37 20.25 7.80 -92.71 -0.72 19.53 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -75.08 355.00 2.49 -72.58 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.43 Total: 33.56 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 6.29 Total: -4.78 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -5.32 Total: -127.81 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.57 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.08 2.49 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981016689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.881 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds