Wall clock time and date at job start Tue Mar 31 2020 07:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36444 * 124.85365 * 2 1 4 4 C 1.34490 * 108.85858 * 179.68901 * 3 2 1 5 5 C 1.46689 * 106.32724 * 0.43396 * 4 3 2 6 6 C 1.47264 * 126.93497 * 179.82778 * 5 4 3 7 7 O 1.21633 * 119.99665 * 179.68751 * 6 5 4 8 8 N 1.34777 * 120.00360 * 359.69189 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27622 * 8 6 5 10 10 H 1.08995 * 109.47013 * 324.72129 * 9 8 6 11 11 C 1.52999 * 109.47257 * 84.72116 * 9 8 6 12 12 C 1.52999 * 109.47156 * 59.99882 * 11 9 8 13 13 C 1.53004 * 109.47038 * 60.00078 * 12 11 9 14 14 C 1.52999 * 109.47083 * 299.99966 * 13 12 11 15 15 H 1.09003 * 109.47054 * 300.00274 * 14 13 12 16 16 N 1.46500 * 109.47322 * 180.02562 * 14 13 12 17 17 C 1.36930 * 120.00202 * 84.99803 * 16 14 13 18 18 H 1.08008 * 120.00052 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00277 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47612 * 60.00003 * 21 19 17 23 23 H 1.48505 * 109.47451 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47296 * 299.99717 * 21 19 17 25 25 C 1.52999 * 109.47156 * 60.00106 * 14 13 12 26 26 C 1.34663 * 124.85142 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47026 * 270.02540 * 1 2 3 28 28 H 1.09001 * 109.47165 * 30.02431 * 1 2 3 29 29 H 1.08996 * 109.47125 * 150.02013 * 1 2 3 30 30 H 1.08000 * 125.56934 * 359.97438 * 3 2 1 31 31 H 1.08003 * 126.83240 * 180.26814 * 4 3 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.47054 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.47245 * 299.99926 * 11 9 8 35 35 H 1.08998 * 109.47115 * 179.97438 * 12 11 9 36 36 H 1.08994 * 109.47213 * 300.00018 * 12 11 9 37 37 H 1.08994 * 109.47168 * 59.99912 * 13 12 11 38 38 H 1.08995 * 109.47216 * 179.97438 * 13 12 11 39 39 H 0.97003 * 119.99933 * 264.99956 * 16 14 13 40 40 H 0.97002 * 120.00427 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.47115 * 180.02562 * 25 14 13 42 42 H 1.08994 * 109.47213 * 59.99982 * 25 14 13 43 43 H 1.07999 * 125.79562 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 0.0069 5 6 3.5461 -0.7178 0.0008 6 6 4.7284 -1.5958 0.0014 7 8 4.5885 -2.8041 0.0016 8 7 5.9653 -1.0607 0.0017 9 6 7.1413 -1.9342 -0.0039 10 1 6.9337 -2.8268 0.5861 11 6 7.4694 -2.3388 -1.4425 12 6 7.7608 -1.0858 -2.2708 13 6 8.9526 -0.3407 -1.6662 14 6 8.6246 0.0639 -0.2276 15 1 7.7495 0.7138 -0.2235 16 7 9.7654 0.7779 0.3511 17 6 9.9072 2.1240 0.1440 18 1 9.1777 2.6595 -0.4457 19 6 10.9884 2.8005 0.6919 20 7 11.8770 2.1481 1.4109 21 14 11.1814 4.6369 0.4100 22 1 9.9985 5.3488 0.9568 23 1 12.4080 5.1169 1.0959 24 1 11.2911 4.9054 -1.0465 25 6 8.3331 -1.1891 0.6007 26 6 2.2345 -1.1051 0.0005 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.8829 2.1372 -0.0004 31 1 4.3981 1.4017 0.0128 32 1 6.0769 -0.0971 0.0012 33 1 8.3446 -2.9884 -1.4467 34 1 6.6204 -2.8696 -1.8732 35 1 7.9950 -1.3741 -3.2956 36 1 6.8859 -0.4359 -2.2667 37 1 9.8275 -0.9906 -1.6704 38 1 9.1605 0.5517 -2.2565 39 1 10.4203 0.2971 0.8810 40 1 12.6324 2.6209 1.7941 41 1 8.0990 -0.9008 1.6254 42 1 9.2080 -1.8390 0.5965 43 1 1.8766 -2.1241 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981016690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:19 Heat of formation + Delta-G solvation = 12.570665 kcal Electronic energy + Delta-G solvation = -23324.467226 eV Core-core repulsion = 19984.149122 eV Total energy + Delta-G solvation = -3340.318105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30899 -39.59444 -37.58827 -34.34189 -33.20830 -32.58905 -31.08424 -29.67917 -29.11768 -27.81322 -26.71372 -23.72696 -22.92710 -21.88299 -20.98017 -20.37100 -19.69117 -18.59356 -18.04447 -17.06288 -15.92159 -15.63139 -15.28813 -15.16787 -14.56247 -14.31363 -14.28034 -13.59126 -13.53318 -13.34844 -13.22591 -12.97022 -12.74091 -12.56021 -12.29853 -12.14760 -11.93984 -11.70590 -11.58972 -10.95930 -10.84300 -10.67397 -10.29505 -10.17852 -10.08053 -9.67349 -9.65928 -9.44632 -8.87169 -8.80099 -8.63198 -8.38484 -6.92961 -5.74228 -3.02760 1.78200 2.34870 2.63578 3.44881 3.49395 3.50391 3.64566 3.75039 4.41758 4.60021 4.75971 4.76249 4.85365 5.01220 5.08974 5.22789 5.29772 5.31901 5.40339 5.56061 5.68808 5.78942 5.81490 5.86473 5.96015 6.03667 6.08820 6.17088 6.21643 6.38696 6.40744 6.60203 6.64546 6.66253 6.80787 6.85114 6.92440 7.02588 7.06464 7.16677 7.71044 7.90895 8.44415 8.59313 9.55373 10.13888 10.48459 11.48444 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003912 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.811227 B = 7155.447008 C = 8359.041846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.165 4.165 5 C -0.230 4.230 6 C 0.590 3.410 7 O -0.563 6.563 8 N -0.712 5.712 9 C 0.153 3.847 10 H 0.083 0.917 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.136 4.136 14 C 0.181 3.819 15 H 0.042 0.958 16 N -0.725 5.725 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.133 4.133 26 C 0.069 3.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.518 -5.602 -4.051 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.189 4.189 5 C -0.241 4.241 6 C 0.379 3.621 7 O -0.444 6.444 8 N -0.363 5.363 9 C 0.048 3.952 10 H 0.101 0.899 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.176 4.176 14 C 0.071 3.929 15 H 0.060 0.940 16 N -0.365 5.365 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.172 4.172 26 C -0.066 4.066 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.184 0.816 31 H 0.166 0.834 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.948 -6.218 -4.061 23.171 hybrid contribution 0.457 1.470 -0.026 1.540 sum -21.491 -4.748 -4.088 22.386 Atomic orbital electron populations 1.22093 0.77079 1.04545 1.03461 1.43607 1.06659 1.05986 1.56379 1.21748 0.90604 0.91218 1.11090 1.22152 0.96353 0.93362 1.07050 1.20428 0.92655 0.93414 1.17556 1.17370 0.82525 0.86918 0.75293 1.90730 1.86786 1.14754 1.52130 1.45973 1.05012 1.10752 1.74596 1.20909 0.84434 0.93406 0.96473 0.89931 1.21893 1.01189 0.98009 0.95447 1.21501 0.99055 0.96614 0.98172 1.22273 0.96702 0.99564 0.99093 1.20145 0.91290 0.90891 0.90594 0.94039 1.42419 1.26359 1.06205 1.61514 1.19185 1.06411 0.84678 1.26605 0.91286 1.24727 0.97695 0.97917 1.00621 1.69648 1.14567 1.35029 1.38929 0.86296 0.76983 0.85535 0.77535 1.21314 1.21764 1.21329 1.22119 0.96769 0.98288 1.00009 1.21744 0.89870 0.91625 1.03345 0.90732 0.89659 0.89706 0.81648 0.83440 0.76118 0.91332 0.92111 0.93007 0.92510 0.92638 0.92182 0.78278 0.93502 0.91274 0.90645 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.04 59.85 0.66 0.97 16 2 N -0.45 -4.00 3.09 -124.53 -0.38 -4.39 16 3 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 4 C -0.17 -1.93 10.56 -37.50 -0.40 -2.33 16 5 C -0.23 -3.10 6.29 -103.35 -0.65 -3.75 16 6 C 0.59 9.28 7.77 -12.59 -0.10 9.18 16 7 O -0.56 -10.36 16.58 5.25 0.09 -10.27 16 8 N -0.71 -10.54 4.23 -54.93 -0.23 -10.77 16 9 C 0.15 2.31 2.78 -67.93 -0.19 2.12 16 10 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 11 C -0.13 -1.84 5.60 -26.73 -0.15 -1.99 16 12 C -0.12 -1.72 5.77 -26.73 -0.15 -1.87 16 13 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 14 C 0.18 3.47 2.60 -67.93 -0.18 3.29 16 15 H 0.04 0.80 6.44 -51.93 -0.33 0.46 16 16 N -0.72 -17.78 5.12 -53.43 -0.27 -18.06 16 17 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C -0.13 -2.21 5.08 -26.73 -0.14 -2.34 16 26 C 0.07 0.78 11.12 -16.84 -0.19 0.59 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.25 8.13 -51.93 -0.42 -0.18 16 29 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 30 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.15 1.61 7.70 -52.48 -0.40 1.21 16 32 H 0.40 5.74 5.99 -40.82 -0.24 5.49 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -33.34 350.57 -8.59 -41.92 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.71 Total: 12.62 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.06 Total: -6.20 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.17 Total: -60.56 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.34 -8.59 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981016690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.494 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds