Wall clock time and date at job start Tue Mar 31 2020 07:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36444 * 124.85365 * 2 1 4 4 C 1.34490 * 108.85858 * 179.68901 * 3 2 1 5 5 C 1.46689 * 106.32724 * 0.43396 * 4 3 2 6 6 C 1.47264 * 126.93497 * 179.82778 * 5 4 3 7 7 O 1.21633 * 119.99665 * 179.68751 * 6 5 4 8 8 N 1.34777 * 120.00360 * 359.69189 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27622 * 8 6 5 10 10 H 1.08995 * 109.47013 * 324.72129 * 9 8 6 11 11 C 1.52999 * 109.47257 * 84.72116 * 9 8 6 12 12 C 1.52999 * 109.47156 * 59.99882 * 11 9 8 13 13 C 1.53004 * 109.47038 * 60.00078 * 12 11 9 14 14 C 1.52999 * 109.47083 * 299.99966 * 13 12 11 15 15 H 1.09003 * 109.47054 * 300.00274 * 14 13 12 16 16 N 1.46500 * 109.47322 * 180.02562 * 14 13 12 17 17 C 1.36930 * 120.00202 * 84.99803 * 16 14 13 18 18 H 1.08008 * 120.00052 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00277 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47612 * 60.00003 * 21 19 17 23 23 H 1.48505 * 109.47451 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47296 * 299.99717 * 21 19 17 25 25 C 1.52999 * 109.47156 * 60.00106 * 14 13 12 26 26 C 1.34663 * 124.85142 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47026 * 270.02540 * 1 2 3 28 28 H 1.09001 * 109.47165 * 30.02431 * 1 2 3 29 29 H 1.08996 * 109.47125 * 150.02013 * 1 2 3 30 30 H 1.08000 * 125.56934 * 359.97438 * 3 2 1 31 31 H 1.08003 * 126.83240 * 180.26814 * 4 3 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.47054 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.47245 * 299.99926 * 11 9 8 35 35 H 1.08998 * 109.47115 * 179.97438 * 12 11 9 36 36 H 1.08994 * 109.47213 * 300.00018 * 12 11 9 37 37 H 1.08994 * 109.47168 * 59.99912 * 13 12 11 38 38 H 1.08995 * 109.47216 * 179.97438 * 13 12 11 39 39 H 0.97003 * 119.99933 * 264.99956 * 16 14 13 40 40 H 0.97002 * 120.00427 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.47115 * 180.02562 * 25 14 13 42 42 H 1.08994 * 109.47213 * 59.99982 * 25 14 13 43 43 H 1.07999 * 125.79562 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 0.0069 5 6 3.5461 -0.7178 0.0008 6 6 4.7284 -1.5958 0.0014 7 8 4.5885 -2.8041 0.0016 8 7 5.9653 -1.0607 0.0017 9 6 7.1413 -1.9342 -0.0039 10 1 6.9337 -2.8268 0.5861 11 6 7.4694 -2.3388 -1.4425 12 6 7.7608 -1.0858 -2.2708 13 6 8.9526 -0.3407 -1.6662 14 6 8.6246 0.0639 -0.2276 15 1 7.7495 0.7138 -0.2235 16 7 9.7654 0.7779 0.3511 17 6 9.9072 2.1240 0.1440 18 1 9.1777 2.6595 -0.4457 19 6 10.9884 2.8005 0.6919 20 7 11.8770 2.1481 1.4109 21 14 11.1814 4.6369 0.4100 22 1 9.9985 5.3488 0.9568 23 1 12.4080 5.1169 1.0959 24 1 11.2911 4.9054 -1.0465 25 6 8.3331 -1.1891 0.6007 26 6 2.2345 -1.1051 0.0005 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.8829 2.1372 -0.0004 31 1 4.3981 1.4017 0.0128 32 1 6.0769 -0.0971 0.0012 33 1 8.3446 -2.9884 -1.4467 34 1 6.6204 -2.8696 -1.8732 35 1 7.9950 -1.3741 -3.2956 36 1 6.8859 -0.4359 -2.2667 37 1 9.8275 -0.9906 -1.6704 38 1 9.1605 0.5517 -2.2565 39 1 10.4203 0.2971 0.8810 40 1 12.6324 2.6209 1.7941 41 1 8.0990 -0.9008 1.6254 42 1 9.2080 -1.8390 0.5965 43 1 1.8766 -2.1241 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981016690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:19 Heat of formation + Delta-G solvation = -8.208838 kcal Electronic energy + Delta-G solvation = -23325.368293 eV Core-core repulsion = 19984.149122 eV Total energy + Delta-G solvation = -3341.219171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11736 -40.84141 -38.95162 -36.08355 -34.43289 -33.56182 -32.85426 -30.93165 -30.02744 -29.46814 -27.36822 -25.66457 -24.02421 -23.17943 -22.45779 -21.29657 -20.65063 -19.95533 -19.18852 -18.75616 -17.14914 -16.61067 -16.49027 -16.33712 -16.13207 -15.63910 -15.31642 -15.02460 -14.96001 -14.71991 -14.41660 -13.90387 -13.86588 -13.50646 -13.26782 -13.12450 -13.03777 -12.98072 -12.88066 -12.81086 -12.73449 -12.23386 -12.05308 -11.92609 -11.56515 -11.42910 -10.97666 -10.89594 -10.80128 -9.99054 -9.47961 -9.25370 -8.96053 -7.89781 -5.17799 0.82318 1.49686 1.52311 1.54514 1.58146 1.96462 2.53061 2.59374 2.65134 3.43337 3.68742 3.90511 3.96333 4.00833 4.05209 4.11313 4.30264 4.33165 4.38978 4.40302 4.49449 4.58254 4.62428 4.70537 4.75481 4.76780 4.84386 4.98533 5.04841 5.11154 5.18074 5.22374 5.25338 5.40007 5.53315 5.55345 5.60638 5.71437 5.79654 6.10251 6.32199 6.38320 6.72885 7.38304 7.40143 8.14909 8.37984 9.33694 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003912 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.811227 B = 7155.447008 C = 8359.041846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.190 4.190 5 C -0.267 4.267 6 C 0.588 3.412 7 O -0.597 6.597 8 N -0.709 5.709 9 C 0.159 3.841 10 H 0.079 0.921 11 C -0.120 4.120 12 C -0.104 4.104 13 C -0.126 4.126 14 C 0.178 3.822 15 H 0.044 0.956 16 N -0.737 5.737 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.277 1.277 23 H -0.299 1.299 24 H -0.279 1.279 25 C -0.120 4.120 26 C 0.070 3.930 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.199 0.801 31 H 0.146 0.854 32 H 0.405 0.595 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.002 -4.886 -4.982 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.118 5.118 3 C -0.136 4.136 4 C -0.214 4.214 5 C -0.278 4.278 6 C 0.378 3.622 7 O -0.481 6.481 8 N -0.360 5.360 9 C 0.054 3.946 10 H 0.097 0.903 11 C -0.159 4.159 12 C -0.142 4.142 13 C -0.166 4.166 14 C 0.070 3.930 15 H 0.061 0.939 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.203 1.203 23 H -0.225 1.225 24 H -0.205 1.205 25 C -0.159 4.159 26 C -0.067 4.067 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.216 0.784 31 H 0.164 0.836 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -24.498 -5.492 -5.024 25.604 hybrid contribution 1.094 1.221 0.255 1.659 sum -23.404 -4.271 -4.768 24.264 Atomic orbital electron populations 1.22450 0.74149 1.06365 1.04882 1.43928 1.08388 1.05056 1.54404 1.22231 0.89959 0.92633 1.08797 1.22262 0.97671 0.92610 1.08826 1.20427 0.92696 0.94146 1.20497 1.17744 0.83180 0.86807 0.74435 1.90695 1.87244 1.16155 1.53979 1.45931 1.04879 1.10730 1.74439 1.20805 0.83898 0.93028 0.96909 0.90278 1.21841 1.01613 0.97874 0.94556 1.21397 0.97572 0.96373 0.98868 1.22093 0.97813 0.99014 0.97705 1.20341 0.89543 0.91547 0.91559 0.93852 1.42624 1.27464 1.05768 1.61750 1.19580 1.05930 0.85954 1.25220 0.90564 1.25515 0.97929 1.02136 1.01327 1.69811 1.15240 1.36475 1.40700 0.85268 0.76677 0.80657 0.77519 1.20283 1.22536 1.20547 1.21959 0.97609 0.97236 0.99097 1.21929 0.89588 0.92778 1.02386 0.89458 0.87545 0.88345 0.78448 0.83584 0.75855 0.90220 0.92151 0.91321 0.92350 0.93215 0.93961 0.79661 0.94200 0.92192 0.90324 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 11.04 127.77 1.41 1.74 16 2 N -0.44 -6.73 3.09 -547.91 -1.69 -8.42 16 3 C -0.01 -0.15 11.34 83.12 0.94 0.79 16 4 C -0.19 -4.27 10.56 23.62 0.25 -4.02 16 5 C -0.27 -7.08 6.29 -19.04 -0.12 -7.20 16 6 C 0.59 18.53 7.77 86.62 0.67 19.20 16 7 O -0.60 -22.11 16.58 -4.14 -0.07 -22.18 16 8 N -0.71 -20.93 4.23 -445.95 -1.89 -22.82 16 9 C 0.16 4.75 2.78 44.99 0.13 4.87 16 10 H 0.08 2.47 7.58 -2.39 -0.02 2.46 16 11 C -0.12 -3.34 5.60 30.59 0.17 -3.17 16 12 C -0.10 -2.95 5.77 30.60 0.18 -2.78 16 13 C -0.13 -4.43 5.50 30.60 0.17 -4.26 16 14 C 0.18 6.83 2.60 44.99 0.12 6.95 16 15 H 0.04 1.65 6.44 -2.39 -0.02 1.64 16 16 N -0.74 -36.57 5.12 -322.94 -1.65 -38.23 16 17 C -0.23 -12.84 9.93 84.03 0.83 -12.00 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 21 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 C -0.12 -3.99 5.08 30.60 0.16 -3.83 16 26 C 0.07 1.49 11.12 83.91 0.93 2.42 16 27 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.11 0.17 8.13 -2.39 -0.02 0.15 16 29 H 0.10 0.30 8.13 -2.39 -0.02 0.28 16 30 H 0.20 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.15 3.15 7.70 -2.91 -0.02 3.13 16 32 H 0.40 11.53 5.99 -92.71 -0.56 10.98 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.66 7.60 -2.39 -0.02 1.64 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.37 20.00 7.80 -92.71 -0.72 19.27 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -72.20 350.57 3.05 -69.15 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.27 Total: 39.02 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 6.30 Total: -5.23 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -4.95 Total: -128.67 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.07 Total: -22.18 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.20 3.05 -69.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981016690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.943 kcal (2) G-P(sol) polarization free energy of solvation -72.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds