Wall clock time and date at job start Tue Mar 31 2020 07:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36931 * 120.00044 * 2 1 4 4 H 1.08005 * 120.00229 * 204.21323 * 3 2 1 5 5 C 1.38814 * 120.00197 * 24.21240 * 3 2 1 6 6 N 1.31618 * 119.99927 * 14.35453 * 5 3 2 7 7 Si 1.86801 * 120.00085 * 194.35980 * 5 3 2 8 8 H 1.48501 * 109.47440 * 59.99294 * 7 5 3 9 9 H 1.48498 * 109.47314 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46801 * 299.99635 * 7 5 3 11 11 C 1.46502 * 119.99761 * 179.97438 * 2 1 3 12 12 C 1.53339 * 109.42015 * 60.12878 * 11 2 1 13 13 C 1.53196 * 109.15280 * 178.67190 * 12 11 2 14 14 N 1.46925 * 108.88924 * 54.57805 * 13 12 11 15 15 C 1.34781 * 120.63187 * 126.34828 * 14 13 12 16 16 O 1.21620 * 119.99700 * 353.73656 * 15 14 13 17 17 C 1.47259 * 120.00052 * 173.74053 * 15 14 13 18 18 C 1.46690 * 126.94178 * 332.57266 * 17 15 14 19 19 C 1.34485 * 106.33167 * 179.97438 * 18 17 15 20 20 N 1.36448 * 108.85870 * 0.02562 * 19 18 17 21 21 C 1.46499 * 124.85470 * 180.02562 * 20 19 18 22 22 C 1.34662 * 110.29429 * 359.74547 * 20 19 18 23 23 C 1.46932 * 118.73916 * 306.32172 * 14 13 12 24 24 C 1.53042 * 109.46121 * 299.99738 * 11 2 1 25 25 H 1.09008 * 109.47320 * 272.20884 * 1 2 3 26 26 H 1.09001 * 109.47173 * 32.21071 * 1 2 3 27 27 H 1.09003 * 109.47529 * 152.21686 * 1 2 3 28 28 H 0.96998 * 120.00201 * 180.02562 * 6 5 3 29 29 H 1.09005 * 109.44530 * 180.02562 * 11 2 1 30 30 H 1.08997 * 109.68750 * 58.70427 * 12 11 2 31 31 H 1.09001 * 109.47846 * 298.51015 * 12 11 2 32 32 H 1.08994 * 109.58528 * 294.72017 * 13 12 11 33 33 H 1.08996 * 109.58711 * 174.43748 * 13 12 11 34 34 H 1.07996 * 126.83589 * 0.02562 * 18 17 15 35 35 H 1.08000 * 125.57435 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.47276 * 89.96681 * 21 20 19 37 37 H 1.08997 * 109.47292 * 209.97135 * 21 20 19 38 38 H 1.09008 * 109.46953 * 329.97630 * 21 20 19 39 39 H 1.08003 * 125.80125 * 180.29282 * 22 20 19 40 40 H 1.08997 * 109.58751 * 173.40128 * 23 14 13 41 41 H 1.09004 * 109.58557 * 293.67793 * 23 14 13 42 42 H 1.08996 * 109.49421 * 61.43623 * 24 11 2 43 43 H 1.09003 * 109.52467 * 301.35596 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1584 1.2270 -0.3836 5 6 1.5472 2.3352 0.4930 6 7 0.4477 2.2457 1.2109 7 14 2.2969 4.0088 0.1375 8 1 2.3426 4.2290 -1.3304 9 1 1.4692 5.0666 0.7707 10 1 3.6748 4.0612 0.6890 11 6 2.1974 -1.2688 0.0006 12 6 1.8286 -2.0710 -1.2531 13 6 2.6225 -3.3811 -1.2631 14 7 2.3849 -4.0910 0.0011 15 6 1.9587 -5.3697 0.0011 16 8 1.6583 -5.9105 -1.0460 17 6 1.8569 -6.1118 1.2689 18 6 2.6436 -5.8887 2.4867 19 6 2.2139 -6.7923 3.3854 20 7 1.2308 -7.5478 2.8157 21 6 0.5171 -8.6372 3.4866 22 6 1.0061 -7.1450 1.5505 23 6 2.6211 -3.3807 1.2654 24 6 1.8276 -2.0705 1.2506 25 1 -0.3634 0.0396 1.0270 26 1 -0.3633 0.8695 -0.5478 27 1 -0.3634 -0.9092 -0.4790 28 1 0.0265 3.0488 1.5552 29 1 3.2690 -1.0691 0.0009 30 1 2.0710 -1.4919 -2.1441 31 1 0.7613 -2.2925 -1.2419 32 1 3.6855 -3.1633 -1.3657 33 1 2.2943 -4.0009 -2.0975 34 1 3.4139 -5.1461 2.6329 35 1 2.5865 -6.9025 4.3930 36 1 -0.3659 -8.2394 3.9866 37 1 0.2135 -9.3807 2.7497 38 1 1.1730 -9.1020 4.2229 39 1 0.2788 -7.5671 0.8728 40 1 2.2898 -3.9992 2.0995 41 1 3.6845 -3.1652 1.3703 42 1 0.7603 -2.2917 1.2383 43 1 2.0684 -1.4892 2.1407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985376967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:18 Heat of formation + Delta-G solvation = 31.374381 kcal Electronic energy + Delta-G solvation = -23659.759456 eV Core-core repulsion = 20320.256741 eV Total energy + Delta-G solvation = -3339.502714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21051 -40.67992 -38.77035 -36.64063 -34.19856 -33.51262 -31.92777 -31.44737 -30.08030 -28.01660 -27.63121 -26.36701 -24.24399 -24.07864 -22.47992 -21.34646 -20.68737 -19.74265 -18.75036 -18.20890 -17.37261 -16.91191 -16.46320 -16.34999 -15.81807 -15.70137 -15.13630 -15.05425 -14.84172 -14.59015 -14.40837 -14.13383 -13.72908 -13.67400 -13.23978 -13.16998 -13.05848 -12.94892 -12.81103 -12.75080 -12.52898 -12.33512 -12.19676 -12.04779 -11.81053 -11.55784 -11.22297 -10.84635 -10.58177 -9.67830 -9.38420 -9.21144 -8.72222 -7.80151 -5.28293 0.85861 1.48039 1.50976 1.55166 1.57093 1.92420 2.25529 2.50003 2.55287 3.33118 3.62314 3.81359 3.97521 4.05160 4.10592 4.16309 4.23810 4.30994 4.41437 4.41960 4.50596 4.59755 4.66258 4.76205 4.78018 4.84950 4.88611 4.94057 5.03346 5.05325 5.09928 5.17016 5.23137 5.42222 5.51534 5.63171 5.68346 5.72511 5.80537 6.12271 6.36639 6.40125 6.56406 7.17681 7.28563 7.90390 8.37156 9.23521 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.003535 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.834500 B = 7918.118541 C = 8364.759283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.281 1.281 9 H -0.296 1.296 10 H -0.273 1.273 11 C 0.174 3.826 12 C -0.132 4.132 13 C 0.122 3.878 14 N -0.602 5.602 15 C 0.585 3.415 16 O -0.601 6.601 17 C -0.262 4.262 18 C -0.191 4.191 19 C -0.005 4.005 20 N -0.444 5.444 21 C 0.062 3.938 22 C 0.062 3.938 23 C 0.108 3.892 24 C -0.132 4.132 25 H 0.000 1.000 26 H 0.013 0.987 27 H 0.020 0.980 28 H 0.247 0.753 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.203 0.797 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.177 0.823 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.509 -21.839 6.940 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.208 1.208 9 H -0.223 1.223 10 H -0.198 1.198 11 C 0.067 3.933 12 C -0.172 4.172 13 C -0.001 4.001 14 N -0.333 5.333 15 C 0.378 3.622 16 O -0.484 6.484 17 C -0.273 4.273 18 C -0.214 4.214 19 C -0.133 4.133 20 N -0.118 5.118 21 C -0.078 4.078 22 C -0.075 4.075 23 C -0.015 4.015 24 C -0.172 4.172 25 H 0.018 0.982 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.178 0.822 35 H 0.220 0.780 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.194 0.806 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.103 -22.237 6.678 23.425 hybrid contribution -0.182 1.492 -0.321 1.537 sum 2.921 -20.745 6.357 21.893 Atomic orbital electron populations 1.20373 0.83556 0.95394 0.96909 1.44155 1.01646 1.01439 1.85949 1.19539 0.99346 0.86904 1.33623 0.91058 1.25786 0.98913 1.01871 0.98151 1.70228 1.22658 1.27791 1.37759 0.85339 0.77815 0.79613 0.77651 1.20758 1.22269 1.19813 1.20579 0.95489 0.84668 0.92556 1.22311 0.99483 0.95649 0.99718 1.21525 1.00152 0.92127 0.86323 1.47983 1.65838 1.11476 1.08029 1.17927 0.75116 0.80982 0.88221 1.90685 1.52971 1.69835 1.34955 1.20341 1.07398 1.04142 0.95383 1.22382 1.04121 1.03128 0.91751 1.22336 0.94556 0.95525 1.00834 1.43910 1.29607 1.27951 1.10342 1.22438 0.98181 0.87902 0.99301 1.21843 1.01294 0.96935 0.87421 1.22309 1.00386 0.92522 0.86234 1.22279 0.99380 0.96017 0.99564 0.98171 0.96786 0.96202 0.94387 0.91741 0.91215 0.93787 0.89854 0.90271 0.82199 0.78016 0.89636 0.88616 0.87282 0.80632 0.86571 0.89801 0.94187 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.48 8.06 127.77 1.03 10.51 16 2 N -0.61 -31.03 2.80 -702.04 -1.97 -33.00 16 3 C -0.26 -14.59 9.56 84.03 0.80 -13.79 16 4 H 0.07 3.79 7.84 -2.91 -0.02 3.76 16 5 C -0.05 -2.94 5.04 84.86 0.43 -2.51 16 6 N -0.94 -56.28 10.89 21.65 0.24 -56.04 16 7 Si 0.97 45.37 29.58 68.60 2.03 47.40 16 8 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 C 0.17 7.07 2.55 45.12 0.12 7.19 16 12 C -0.13 -4.80 5.35 30.77 0.16 -4.64 16 13 C 0.12 3.86 6.43 86.36 0.56 4.42 16 14 N -0.60 -19.01 2.97 -822.97 -2.45 -21.46 16 15 C 0.59 19.73 7.64 86.61 0.66 20.39 16 16 O -0.60 -24.06 16.43 -4.09 -0.07 -24.12 16 17 C -0.26 -7.12 5.70 -19.04 -0.11 -7.22 16 18 C -0.19 -3.96 8.63 23.62 0.20 -3.76 16 19 C -0.01 -0.08 11.34 83.12 0.94 0.86 16 20 N -0.44 -6.79 3.09 -547.89 -1.69 -8.49 16 21 C 0.06 0.36 11.03 127.77 1.41 1.77 16 22 C 0.06 1.37 11.22 83.91 0.94 2.31 16 23 C 0.11 3.04 5.27 86.36 0.45 3.49 16 24 C -0.13 -4.82 5.34 30.67 0.16 -4.66 16 25 H 0.00 0.00 7.48 -2.38 -0.02 -0.02 16 26 H 0.01 0.76 7.26 -2.39 -0.02 0.74 16 27 H 0.02 0.92 6.46 -2.39 -0.02 0.90 16 28 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.06 2.59 7.87 -2.38 -0.02 2.57 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.04 1.74 6.73 -2.39 -0.02 1.72 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.08 2.64 7.00 -2.39 -0.02 2.62 16 34 H 0.16 2.91 6.51 -2.91 -0.02 2.89 16 35 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.10 0.38 8.13 -2.39 -0.02 0.36 16 38 H 0.11 0.16 8.13 -2.38 -0.02 0.14 16 39 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.12 2.93 4.04 -2.39 -0.01 2.93 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -74.77 340.56 4.85 -69.91 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.00 Total: 11.43 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.77 Total: 14.37 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -5.87 Total: -118.99 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.77 4.85 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985376967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.288 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds