Wall clock time and date at job start Tue Mar 31 2020 07:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99804 * 2 1 4 4 H 1.07999 * 120.00416 * 202.99809 * 3 2 1 5 5 C 1.38819 * 120.00067 * 22.99427 * 3 2 1 6 6 N 1.31619 * 119.99917 * 11.63796 * 5 3 2 7 7 Si 1.86795 * 120.00039 * 191.63833 * 5 3 2 8 8 H 1.48495 * 109.47234 * 60.00134 * 7 5 3 9 9 H 1.48503 * 109.47023 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47204 * 300.00116 * 7 5 3 11 11 C 1.46494 * 120.00363 * 179.97438 * 2 1 3 12 12 C 1.53041 * 109.46110 * 300.00143 * 11 2 1 13 13 C 1.53189 * 109.31094 * 181.38309 * 12 11 2 14 14 N 1.46929 * 108.78004 * 305.36232 * 13 12 11 15 15 C 1.34769 * 120.63055 * 233.59110 * 14 13 12 16 16 O 1.21280 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99989 * 180.02562 * 15 14 13 18 18 C 1.50695 * 109.47373 * 179.97438 * 17 15 14 19 19 C 1.34844 * 125.89505 * 275.02031 * 18 17 15 20 20 C 1.40887 * 107.42085 * 179.97438 * 19 18 17 21 21 C 1.34848 * 107.41739 * 0.02562 * 20 19 18 22 22 N 1.36340 * 108.21864 * 359.97438 * 21 20 19 23 23 H 0.96995 * 125.63615 * 179.73259 * 22 21 20 24 24 C 1.46924 * 118.73357 * 53.86043 * 14 13 12 25 25 C 1.53045 * 109.46130 * 60.06699 * 11 2 1 26 26 H 1.09007 * 109.46811 * 273.84572 * 1 2 3 27 27 H 1.08994 * 109.47605 * 33.84491 * 1 2 3 28 28 H 1.09002 * 109.46663 * 153.84868 * 1 2 3 29 29 H 0.96995 * 120.00205 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.45045 * 180.02562 * 11 2 1 31 31 H 1.08998 * 109.49649 * 61.43031 * 12 11 2 32 32 H 1.09000 * 109.52094 * 301.34860 * 12 11 2 33 33 H 1.09004 * 109.58670 * 185.57765 * 13 12 11 34 34 H 1.09003 * 109.70921 * 65.22258 * 13 12 11 35 35 H 1.09000 * 109.47626 * 59.99299 * 17 15 14 36 36 H 1.09001 * 109.47028 * 299.99761 * 17 15 14 37 37 H 1.08006 * 126.28809 * 359.97438 * 19 18 17 38 38 H 1.08001 * 126.28996 * 180.02562 * 20 19 18 39 39 H 1.08003 * 125.88799 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.58875 * 65.92942 * 24 14 13 41 41 H 1.09000 * 109.58626 * 186.35259 * 24 14 13 42 42 H 1.08999 * 109.49860 * 298.57151 * 25 11 2 43 43 H 1.09006 * 109.49517 * 58.62903 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2232 -0.3654 5 6 1.5383 2.3404 0.4696 6 7 0.3978 2.2623 1.1220 7 14 2.3341 4.0045 0.1757 8 1 2.4680 4.2382 -1.2846 9 1 1.4889 5.0698 0.7725 10 1 3.6784 4.0286 0.8062 11 6 2.1976 -1.2686 0.0006 12 6 1.8277 -2.0704 1.2506 13 6 2.6214 -3.3806 1.2652 14 7 2.3851 -4.0910 0.0010 15 6 1.9590 -5.3695 0.0010 16 8 1.7673 -5.9448 1.0513 17 6 1.7217 -6.0847 -1.3041 18 6 1.2536 -7.4904 -1.0288 19 6 2.0460 -8.5550 -0.7897 20 6 1.2067 -9.6676 -0.5837 21 6 -0.0666 -9.2408 -0.7052 22 7 -0.0442 -7.9052 -0.9782 23 1 -0.8228 -7.3438 -1.1178 24 6 2.6280 -3.3828 -1.2632 25 6 1.8290 -2.0708 -1.2496 26 1 -0.3633 0.0689 1.0254 27 1 -0.3634 0.8535 -0.5723 28 1 -0.3633 -0.9225 -0.4530 29 1 -0.0293 3.0689 1.4505 30 1 3.2691 -1.0690 0.0009 31 1 0.7605 -2.2916 1.2383 32 1 2.0686 -1.4891 2.1406 33 1 2.2900 -3.9992 2.0993 34 1 3.6847 -3.1651 1.3700 35 1 2.6497 -6.1164 -1.8751 36 1 0.9611 -5.5536 -1.8764 37 1 3.1257 -8.5547 -0.7614 38 1 1.5248 -10.6770 -0.3680 39 1 -0.9515 -9.8516 -0.6038 40 1 3.6915 -3.1651 -1.3616 41 1 2.3011 -4.0027 -2.0980 42 1 0.7617 -2.2920 -1.2384 43 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985798638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:29 Heat of formation + Delta-G solvation = 35.933249 kcal Electronic energy + Delta-G solvation = -23439.451387 eV Core-core repulsion = 20100.146360 eV Total energy + Delta-G solvation = -3339.305027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22913 -39.81697 -37.46759 -35.05231 -32.61090 -31.85137 -30.94931 -30.55220 -29.68964 -26.73078 -26.02073 -24.68053 -22.86133 -22.12627 -20.71646 -20.36810 -19.81765 -18.54769 -17.51302 -17.05126 -16.75711 -15.58155 -15.35712 -15.03703 -14.17952 -13.96377 -13.86169 -13.65940 -13.56717 -13.49828 -13.19783 -13.00659 -12.55548 -12.35864 -12.25161 -12.19433 -11.73955 -11.65265 -11.45982 -10.95424 -10.87585 -10.78821 -10.41700 -10.27701 -10.15152 -9.87423 -9.72961 -9.58882 -8.86839 -8.57970 -8.44414 -8.06921 -6.76923 -5.73915 -3.20499 2.15702 2.71234 2.92379 3.18952 3.35186 3.36726 3.42364 3.42894 4.46039 4.57821 4.70239 4.92692 5.05279 5.13118 5.22144 5.27285 5.35673 5.41295 5.47111 5.49283 5.60989 5.67677 5.77371 5.88439 6.01468 6.14205 6.18327 6.23950 6.27309 6.35608 6.51817 6.61069 6.76759 6.94929 6.95982 6.99591 7.08681 7.36988 7.48895 7.57765 7.71468 7.78488 8.28733 8.38632 9.22248 9.85661 10.35151 11.30914 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.041847 B = 0.003034 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.951397 B = 9226.738568 C = 9312.158231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.114 3.886 14 N -0.607 5.607 15 C 0.512 3.488 16 O -0.536 6.536 17 C -0.072 4.072 18 C 0.036 3.964 19 C -0.183 4.183 20 C -0.202 4.202 21 C -0.015 4.015 22 N -0.553 5.553 23 H 0.411 0.589 24 C 0.108 3.892 25 C -0.148 4.148 26 H 0.026 0.974 27 H 0.042 0.958 28 H -0.004 1.004 29 H 0.253 0.747 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.161 0.839 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -18.216 -7.085 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.318 5.318 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.341 5.341 15 C 0.299 3.701 16 O -0.413 6.413 17 C -0.113 4.113 18 C -0.077 4.077 19 C -0.207 4.207 20 C -0.227 4.227 21 C -0.146 4.146 22 N -0.147 5.147 23 H 0.247 0.753 24 C -0.015 4.015 25 C -0.188 4.188 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.014 0.986 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.056 -18.251 -6.461 19.390 hybrid contribution -0.084 1.328 -0.117 1.336 sum 0.972 -16.923 -6.578 18.183 Atomic orbital electron populations 1.20727 0.82811 0.95331 0.99076 1.43947 1.01754 1.00184 1.85884 1.19179 0.98276 0.85542 1.35564 0.91480 1.25040 0.97798 0.98544 0.98273 1.70055 1.18506 1.27285 1.39445 0.86332 0.78508 0.83821 0.77828 1.21117 1.21679 1.20955 1.20278 0.96016 0.86040 0.90587 1.22494 0.99892 0.94478 1.01540 1.21684 0.99767 0.93698 0.85711 1.48187 1.66103 1.11719 1.08091 1.20464 0.77104 0.81438 0.91095 1.90710 1.51443 1.65793 1.33358 1.20172 1.03742 0.90779 0.96558 1.19560 0.83744 0.94694 1.09737 1.20598 0.98816 0.92294 1.09031 1.20843 0.92392 0.99167 1.10249 1.21757 0.99325 0.84027 1.09459 1.41894 1.07223 1.09176 1.56454 0.75258 1.21924 1.00496 0.94202 0.84902 1.22559 0.99995 0.94783 1.01453 0.95527 0.93931 0.98580 0.93712 0.91895 0.92383 0.90663 0.89751 0.91764 0.86894 0.88429 0.85093 0.84942 0.82119 0.91183 0.90447 0.92027 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.98 8.03 59.85 0.48 4.46 16 2 N -0.60 -14.32 2.81 -173.43 -0.49 -14.81 16 3 C -0.26 -6.82 9.59 -15.06 -0.14 -6.97 16 4 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 6 N -0.91 -26.19 10.64 55.49 0.59 -25.60 16 7 Si 0.91 21.50 29.57 -169.99 -5.03 16.48 16 8 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.18 3.41 2.55 -67.89 -0.17 3.23 16 12 C -0.14 -2.58 5.34 -26.61 -0.14 -2.72 16 13 C 0.11 1.74 6.43 -3.71 -0.02 1.72 16 14 N -0.61 -8.35 2.97 -172.51 -0.51 -8.86 16 15 C 0.51 7.25 7.69 -10.99 -0.08 7.17 16 16 O -0.54 -9.75 15.45 5.56 0.09 -9.66 16 17 C -0.07 -0.74 4.58 -29.04 -0.13 -0.87 16 18 C 0.04 0.42 5.66 -81.79 -0.46 -0.04 16 19 C -0.18 -2.27 10.76 -39.78 -0.43 -2.70 16 20 C -0.20 -2.30 10.86 -39.78 -0.43 -2.73 16 21 C -0.01 -0.15 11.94 -16.75 -0.20 -0.35 16 22 N -0.55 -5.78 6.07 -9.12 -0.06 -5.83 16 23 H 0.41 3.31 8.96 -40.82 -0.37 2.94 16 24 C 0.11 1.26 6.37 -3.49 -0.02 1.24 16 25 C -0.15 -2.25 5.34 -26.39 -0.14 -2.39 16 26 H 0.03 0.70 7.42 -51.93 -0.39 0.32 16 27 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 28 H 0.00 -0.09 6.46 -51.93 -0.34 -0.43 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 31 H 0.06 1.12 7.72 -51.93 -0.40 0.71 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.91 7.93 -51.93 -0.41 0.50 16 36 H 0.10 0.82 7.70 -51.93 -0.40 0.42 16 37 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 42 H 0.06 0.99 6.72 -51.93 -0.35 0.64 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -33.08 342.90 -8.84 -41.92 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.61 Total: 2.18 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.00 Total: -0.98 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.46 Total: -55.10 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.08 -8.84 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985798638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.850 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds