Wall clock time and date at job start Tue Mar 31 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99804 * 2 1 4 4 H 1.07999 * 120.00416 * 202.99809 * 3 2 1 5 5 C 1.38819 * 120.00067 * 22.99427 * 3 2 1 6 6 N 1.31619 * 119.99917 * 11.63796 * 5 3 2 7 7 Si 1.86795 * 120.00039 * 191.63833 * 5 3 2 8 8 H 1.48495 * 109.47234 * 60.00134 * 7 5 3 9 9 H 1.48503 * 109.47023 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47204 * 300.00116 * 7 5 3 11 11 C 1.46494 * 120.00363 * 179.97438 * 2 1 3 12 12 C 1.53041 * 109.46110 * 300.00143 * 11 2 1 13 13 C 1.53189 * 109.31094 * 181.38309 * 12 11 2 14 14 N 1.46929 * 108.78004 * 305.36232 * 13 12 11 15 15 C 1.34769 * 120.63055 * 233.59110 * 14 13 12 16 16 O 1.21280 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99989 * 180.02562 * 15 14 13 18 18 C 1.50695 * 109.47373 * 179.97438 * 17 15 14 19 19 C 1.34844 * 125.89505 * 275.02031 * 18 17 15 20 20 C 1.40887 * 107.42085 * 179.97438 * 19 18 17 21 21 C 1.34848 * 107.41739 * 0.02562 * 20 19 18 22 22 N 1.36340 * 108.21864 * 359.97438 * 21 20 19 23 23 H 0.96995 * 125.63615 * 179.73259 * 22 21 20 24 24 C 1.46924 * 118.73357 * 53.86043 * 14 13 12 25 25 C 1.53045 * 109.46130 * 60.06699 * 11 2 1 26 26 H 1.09007 * 109.46811 * 273.84572 * 1 2 3 27 27 H 1.08994 * 109.47605 * 33.84491 * 1 2 3 28 28 H 1.09002 * 109.46663 * 153.84868 * 1 2 3 29 29 H 0.96995 * 120.00205 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.45045 * 180.02562 * 11 2 1 31 31 H 1.08998 * 109.49649 * 61.43031 * 12 11 2 32 32 H 1.09000 * 109.52094 * 301.34860 * 12 11 2 33 33 H 1.09004 * 109.58670 * 185.57765 * 13 12 11 34 34 H 1.09003 * 109.70921 * 65.22258 * 13 12 11 35 35 H 1.09000 * 109.47626 * 59.99299 * 17 15 14 36 36 H 1.09001 * 109.47028 * 299.99761 * 17 15 14 37 37 H 1.08006 * 126.28809 * 359.97438 * 19 18 17 38 38 H 1.08001 * 126.28996 * 180.02562 * 20 19 18 39 39 H 1.08003 * 125.88799 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.58875 * 65.92942 * 24 14 13 41 41 H 1.09000 * 109.58626 * 186.35259 * 24 14 13 42 42 H 1.08999 * 109.49860 * 298.57151 * 25 11 2 43 43 H 1.09006 * 109.49517 * 58.62903 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2232 -0.3654 5 6 1.5383 2.3404 0.4696 6 7 0.3978 2.2623 1.1220 7 14 2.3341 4.0045 0.1757 8 1 2.4680 4.2382 -1.2846 9 1 1.4889 5.0698 0.7725 10 1 3.6784 4.0286 0.8062 11 6 2.1976 -1.2686 0.0006 12 6 1.8277 -2.0704 1.2506 13 6 2.6214 -3.3806 1.2652 14 7 2.3851 -4.0910 0.0010 15 6 1.9590 -5.3695 0.0010 16 8 1.7673 -5.9448 1.0513 17 6 1.7217 -6.0847 -1.3041 18 6 1.2536 -7.4904 -1.0288 19 6 2.0460 -8.5550 -0.7897 20 6 1.2067 -9.6676 -0.5837 21 6 -0.0666 -9.2408 -0.7052 22 7 -0.0442 -7.9052 -0.9782 23 1 -0.8228 -7.3438 -1.1178 24 6 2.6280 -3.3828 -1.2632 25 6 1.8290 -2.0708 -1.2496 26 1 -0.3633 0.0689 1.0254 27 1 -0.3634 0.8535 -0.5723 28 1 -0.3633 -0.9225 -0.4530 29 1 -0.0293 3.0689 1.4505 30 1 3.2691 -1.0690 0.0009 31 1 0.7605 -2.2916 1.2383 32 1 2.0686 -1.4891 2.1406 33 1 2.2900 -3.9992 2.0993 34 1 3.6847 -3.1651 1.3700 35 1 2.6497 -6.1164 -1.8751 36 1 0.9611 -5.5536 -1.8764 37 1 3.1257 -8.5547 -0.7614 38 1 1.5248 -10.6770 -0.3680 39 1 -0.9515 -9.8516 -0.6038 40 1 3.6915 -3.1651 -1.3616 41 1 2.3011 -4.0027 -2.0980 42 1 0.7617 -2.2920 -1.2384 43 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985798638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:28 Heat of formation + Delta-G solvation = 15.334678 kcal Electronic energy + Delta-G solvation = -23440.344608 eV Core-core repulsion = 20100.146360 eV Total energy + Delta-G solvation = -3340.198248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05747 -40.94354 -38.88156 -36.66167 -34.04816 -33.13475 -31.75403 -31.69766 -31.34769 -28.03505 -27.67084 -26.10970 -24.08956 -23.73746 -21.65066 -21.32347 -20.91974 -19.80343 -18.76785 -18.36239 -18.11232 -16.98266 -16.63340 -16.40770 -15.72859 -15.22036 -15.13041 -14.86520 -14.79447 -14.47849 -14.36877 -14.25409 -13.95178 -13.67665 -13.33378 -13.14779 -13.08235 -12.99184 -12.78198 -12.60631 -12.49312 -12.33346 -12.21358 -12.06500 -11.81440 -11.59035 -11.22683 -10.84182 -10.59451 -9.68673 -9.62805 -8.88627 -8.75184 -7.80610 -5.28905 1.31854 1.47788 1.49482 1.55998 1.65507 2.01781 2.27220 2.52040 2.57074 3.32935 3.58743 3.68772 3.82721 4.00675 4.14674 4.22029 4.24445 4.36369 4.41041 4.48468 4.56314 4.59293 4.67947 4.75085 4.83990 4.86089 4.89672 4.92986 5.02240 5.12266 5.26026 5.37121 5.40220 5.45525 5.52341 5.62001 5.68393 5.72975 6.13100 6.26954 6.35213 6.47516 6.83386 7.17325 7.21028 7.90621 8.34966 9.22571 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.041847 B = 0.003034 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.951397 B = 9226.738568 C = 9312.158231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.612 5.612 3 C -0.259 4.259 4 H 0.075 0.925 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.969 3.031 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.276 1.276 11 C 0.172 3.828 12 C -0.131 4.131 13 C 0.124 3.876 14 N -0.607 5.607 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.064 4.064 18 C 0.020 3.980 19 C -0.208 4.208 20 C -0.228 4.228 21 C -0.013 4.013 22 N -0.552 5.552 23 H 0.422 0.578 24 C 0.113 3.887 25 C -0.137 4.137 26 H -0.007 1.007 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.246 0.754 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.191 0.809 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.054 0.946 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -19.423 -9.271 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.334 5.334 3 C -0.390 4.390 4 H 0.093 0.907 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.202 1.202 9 H -0.226 1.226 10 H -0.202 1.202 11 C 0.065 3.935 12 C -0.171 4.171 13 C 0.000 4.000 14 N -0.340 5.340 15 C 0.300 3.700 16 O -0.463 6.463 17 C -0.104 4.104 18 C -0.094 4.094 19 C -0.233 4.233 20 C -0.252 4.252 21 C -0.144 4.144 22 N -0.148 5.148 23 H 0.260 0.740 24 C -0.009 4.009 25 C -0.177 4.177 26 H 0.011 0.989 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.208 0.792 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.026 -19.478 -8.689 21.425 hybrid contribution -0.369 1.622 0.592 1.766 sum 1.657 -17.857 -8.097 19.677 Atomic orbital electron populations 1.20386 0.83361 0.95530 0.96820 1.44201 1.01773 1.01449 1.85961 1.19581 0.98546 0.86664 1.34177 0.90716 1.25819 0.98582 1.01978 0.98791 1.70240 1.20094 1.27495 1.41142 0.85317 0.77579 0.79522 0.77873 1.20233 1.22578 1.20155 1.20551 0.95492 0.84654 0.92758 1.22278 0.99182 0.95596 1.00061 1.21433 0.99945 0.91910 0.86671 1.48254 1.65813 1.11835 1.08089 1.21167 0.75722 0.81184 0.91963 1.90696 1.53324 1.66808 1.35444 1.20247 1.05980 0.89602 0.94543 1.19816 0.84232 0.95298 1.10029 1.20872 0.99331 0.93236 1.09837 1.21159 0.93076 0.99767 1.11210 1.22281 1.00052 0.84212 1.07893 1.42003 1.07349 1.09504 1.55937 0.74034 1.22085 1.01140 0.92636 0.85008 1.22379 1.00147 0.96094 0.99035 0.98853 0.96647 0.95523 0.94508 0.91893 0.94128 0.93333 0.91100 0.90201 0.83950 0.85748 0.84993 0.83902 0.79217 0.89250 0.86252 0.92765 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 8.03 127.77 1.03 10.07 16 2 N -0.61 -29.42 2.81 -702.62 -1.97 -31.40 16 3 C -0.26 -13.81 9.59 84.04 0.81 -13.00 16 4 H 0.08 3.79 7.82 -2.91 -0.02 3.77 16 5 C -0.06 -3.17 5.12 84.86 0.43 -2.73 16 6 N -0.94 -55.99 10.64 21.65 0.23 -55.76 16 7 Si 0.97 44.52 29.57 68.60 2.03 46.55 16 8 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 9 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 C 0.17 6.35 2.55 45.02 0.11 6.46 16 12 C -0.13 -4.71 5.34 30.67 0.16 -4.55 16 13 C 0.12 3.66 6.43 86.36 0.56 4.21 16 14 N -0.61 -15.02 2.97 -818.09 -2.43 -17.45 16 15 C 0.51 13.22 7.69 87.66 0.67 13.89 16 16 O -0.58 -20.69 15.45 -3.03 -0.05 -20.73 16 17 C -0.06 -1.08 4.58 29.10 0.13 -0.94 16 18 C 0.02 0.42 5.66 41.08 0.23 0.65 16 19 C -0.21 -4.89 10.76 22.14 0.24 -4.65 16 20 C -0.23 -4.90 10.86 22.14 0.24 -4.66 16 21 C -0.01 -0.23 11.94 83.21 0.99 0.76 16 22 N -0.55 -10.31 6.07 -182.77 -1.11 -11.42 16 23 H 0.42 5.75 8.96 -92.71 -0.83 4.92 16 24 C 0.11 2.14 6.37 86.51 0.55 2.69 16 25 C -0.14 -3.75 5.34 30.82 0.16 -3.59 16 26 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 27 H 0.01 0.80 7.22 -2.39 -0.02 0.78 16 28 H 0.03 1.11 6.46 -2.39 -0.02 1.10 16 29 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.06 2.31 7.86 -2.39 -0.02 2.30 16 31 H 0.04 1.58 7.72 -2.39 -0.02 1.56 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.32 7.01 -2.39 -0.02 2.30 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.14 1.58 7.93 -2.39 -0.02 1.56 16 36 H 0.12 1.46 7.70 -2.39 -0.02 1.44 16 37 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 1.36 5.93 -2.39 -0.01 1.34 16 42 H 0.05 1.58 6.72 -2.39 -0.02 1.57 16 43 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -74.23 342.90 3.20 -71.03 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.18 Total: 14.57 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.33 Total: 4.61 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.28 Total: -116.02 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -74.23 3.20 -71.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985798638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.360 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds