Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47267 * 2 1 4 4 C 1.35530 * 125.67977 * 265.23072 * 3 2 1 5 5 C 1.35451 * 108.87346 * 180.30576 * 4 3 2 6 6 C 1.39838 * 107.86336 * 359.73314 * 5 4 3 7 7 C 1.37657 * 125.67535 * 85.07880 * 3 2 1 8 8 C 1.46668 * 126.23416 * 359.96094 * 7 3 2 9 9 O 1.21697 * 120.00302 * 7.99108 * 8 7 3 10 10 N 1.34775 * 120.00187 * 187.99634 * 8 7 3 11 11 C 1.47428 * 125.64513 * 358.88172 * 10 8 7 12 12 C 1.54908 * 104.83172 * 155.91695 * 11 10 8 13 13 C 1.55155 * 101.58267 * 37.00893 * 12 11 10 14 14 H 1.09003 * 110.72338 * 82.86106 * 13 12 11 15 15 N 1.46501 * 110.71852 * 205.95696 * 13 12 11 16 16 C 1.36937 * 120.00220 * 271.15446 * 15 13 12 17 17 H 1.08004 * 119.99760 * 0.02562 * 16 15 13 18 18 C 1.38808 * 120.00023 * 179.97438 * 16 15 13 19 19 N 1.31611 * 120.00425 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47035 * 60.00703 * 20 18 16 22 22 H 1.48501 * 109.47103 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47529 * 300.00395 * 20 18 16 24 24 C 1.47018 * 125.65388 * 178.93035 * 10 8 7 25 25 H 1.09007 * 109.88689 * 300.43463 * 24 10 8 26 26 C 1.53002 * 109.88180 * 61.59691 * 24 10 8 27 27 H 1.08992 * 109.47401 * 175.01809 * 1 2 3 28 28 H 1.09003 * 109.46976 * 295.02320 * 1 2 3 29 29 H 1.09005 * 109.46830 * 55.01311 * 1 2 3 30 30 H 1.08996 * 109.47067 * 239.99886 * 2 1 3 31 31 H 1.08998 * 109.46595 * 120.00479 * 2 1 3 32 32 H 1.08004 * 125.56425 * 0.06787 * 4 3 2 33 33 H 1.07997 * 126.06767 * 179.76451 * 5 4 3 34 34 H 1.07996 * 126.45545 * 179.97438 * 6 5 4 35 35 H 1.08997 * 110.36820 * 37.07980 * 11 10 8 36 36 H 1.09003 * 110.45805 * 274.79636 * 11 10 8 37 37 H 1.09002 * 111.00704 * 278.93146 * 12 11 10 38 38 H 1.09006 * 111.00157 * 155.08105 * 12 11 10 39 39 H 0.96999 * 120.00155 * 91.15842 * 15 13 12 40 40 H 0.96999 * 120.00761 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47358 * 177.80908 * 26 24 10 42 42 H 1.09000 * 109.47096 * 297.81270 * 26 24 10 43 43 H 1.08999 * 109.46824 * 57.80746 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3682 2.0959 -1.0971 5 6 2.7762 3.3270 -0.7062 6 6 2.6736 3.3907 0.6869 7 6 2.1956 2.1700 1.1141 8 6 1.9302 1.7808 2.5031 9 8 1.6528 0.6261 2.7691 10 7 1.9935 2.7019 3.4849 11 6 2.3392 4.1241 3.3078 12 6 1.6911 4.8433 4.5170 13 6 1.8974 3.8003 5.6470 14 1 2.8973 3.8853 6.0726 15 7 0.8782 3.9555 6.6879 16 6 1.0954 4.8081 7.7372 17 1 2.0180 5.3665 7.7972 18 6 0.1296 4.9555 8.7232 19 7 -0.9949 4.2754 8.6499 20 14 0.4263 6.1181 10.1549 21 1 0.6264 7.4965 9.6400 22 1 -0.7482 6.0943 11.0634 23 1 1.6365 5.6874 10.8999 24 6 1.7302 2.4548 4.9101 25 1 0.7133 2.0845 5.0405 26 6 2.7322 1.4350 5.4551 27 1 -0.3634 -1.0237 -0.0892 28 1 -0.3633 0.4347 0.9312 29 1 -0.3633 0.5893 -0.8420 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3316 1.7405 -2.1163 33 1 3.1193 4.1190 -1.3554 34 1 2.9223 4.2364 1.3107 35 1 1.9232 4.5022 2.3740 36 1 3.4209 4.2579 3.3221 37 1 0.6307 5.0246 4.3414 38 1 2.2125 5.7733 4.7438 39 1 0.0495 3.4542 6.6339 40 1 -1.6697 4.3781 9.3390 41 1 2.5559 1.2860 6.5204 42 1 2.6084 0.4877 4.9303 43 1 3.7462 1.8049 5.3029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987533157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = 40.097681 kcal Electronic energy + Delta-G solvation = -23777.701587 eV Core-core repulsion = 20438.577143 eV Total energy + Delta-G solvation = -3339.124444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49074 -39.50627 -37.23396 -34.55793 -33.87929 -31.82567 -30.97519 -29.64033 -29.40542 -28.43355 -25.30015 -23.83370 -23.37518 -23.02600 -21.03892 -20.73794 -19.75787 -18.87939 -17.24871 -17.00357 -16.26571 -15.66636 -15.21333 -15.01188 -14.58651 -14.22998 -13.94797 -13.76682 -13.53616 -13.34187 -13.00045 -12.83538 -12.59502 -12.36700 -12.30972 -12.09890 -12.06561 -11.82194 -11.33948 -11.30361 -11.03957 -11.00808 -10.75911 -10.57123 -10.25635 -10.01749 -9.76501 -9.61038 -8.93663 -8.79540 -8.47194 -8.16811 -7.02898 -5.81232 -3.11703 1.53321 2.56572 2.72143 3.34817 3.41999 3.46913 3.47671 3.50806 4.55118 4.57271 4.61652 4.87267 4.91055 5.05555 5.14086 5.24729 5.27570 5.31608 5.41629 5.50953 5.52554 5.62840 5.66233 5.70810 5.80428 5.94919 5.96146 6.02102 6.10803 6.12076 6.17711 6.32378 6.47465 6.60270 6.61507 6.66766 6.84118 6.93901 6.96857 7.17935 7.65529 7.76161 8.34795 8.37238 9.47490 10.01985 10.36791 11.40915 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.003585 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.854047 B = 7807.566311 C = 8213.872002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.409 5.409 4 C 0.008 3.992 5 C -0.211 4.211 6 C -0.158 4.158 7 C -0.039 4.039 8 C 0.598 3.402 9 O -0.554 6.554 10 N -0.594 5.594 11 C 0.085 3.915 12 C -0.157 4.157 13 C 0.176 3.824 14 H 0.067 0.933 15 N -0.714 5.714 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.130 3.870 25 H 0.078 0.922 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.164 0.836 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.362 -4.485 -19.775 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.082 5.082 4 C -0.127 4.127 5 C -0.235 4.235 6 C -0.184 4.184 7 C -0.153 4.153 8 C 0.388 3.612 9 O -0.435 6.435 10 N -0.326 5.326 11 C -0.038 4.038 12 C -0.198 4.198 13 C 0.064 3.936 14 H 0.084 0.916 15 N -0.354 5.354 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.027 3.973 25 H 0.096 0.904 26 C -0.212 4.212 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.106 -5.428 -19.476 21.430 hybrid contribution -0.186 0.595 0.599 0.864 sum 6.919 -4.834 -18.876 20.678 Atomic orbital electron populations 1.22078 0.94109 1.02827 1.03111 1.22054 0.95965 0.79747 1.04888 1.44059 1.47337 1.11600 1.05217 1.21961 1.05953 0.93284 0.91513 1.20843 1.09874 0.97465 0.95294 1.22053 1.04157 0.96562 0.95620 1.20069 1.14360 0.93038 0.87831 1.16573 0.77485 0.84340 0.82775 1.90746 1.50761 1.18276 1.83702 1.48141 1.67435 1.09601 1.07453 1.22900 0.99710 0.80669 1.00549 1.23605 1.01408 0.99744 0.95085 1.21247 0.94453 0.89395 0.88461 0.91552 1.42331 1.17752 1.51688 1.23673 1.19166 1.01565 1.17170 0.99624 0.91011 1.24755 0.96502 1.00228 0.99090 1.69649 1.07811 1.44545 1.35792 0.86258 0.76922 0.80627 0.82284 1.21182 1.21699 1.21191 1.21937 0.99602 0.97555 0.78211 0.90407 1.22049 0.98268 0.99197 1.01705 0.90786 0.91410 0.92410 0.89617 0.87364 0.81826 0.84230 0.82429 0.89646 0.91361 0.90611 0.90456 0.78007 0.93324 0.91093 0.91977 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.09 0.99 6.23 -4.04 -0.03 0.96 16 3 N -0.41 -5.01 2.76 -112.88 -0.31 -5.32 16 4 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 5 C -0.21 -2.24 10.81 -39.98 -0.43 -2.68 16 6 C -0.16 -1.96 9.16 -39.12 -0.36 -2.32 16 7 C -0.04 -0.57 6.84 -81.98 -0.56 -1.13 16 8 C 0.60 9.99 7.61 -12.86 -0.10 9.89 16 9 O -0.55 -10.36 13.77 5.19 0.07 -10.28 16 10 N -0.59 -9.61 3.06 -164.55 -0.50 -10.12 16 11 C 0.08 1.16 5.24 -2.53 -0.01 1.14 16 12 C -0.16 -2.58 6.77 -24.58 -0.17 -2.75 16 13 C 0.18 3.38 3.12 -66.10 -0.21 3.17 16 14 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 15 N -0.71 -17.30 5.24 -51.65 -0.27 -17.57 16 16 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.26 5.50 -17.44 -0.10 -0.35 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.13 2.35 3.22 -66.96 -0.22 2.13 16 25 H 0.08 1.57 7.71 -51.93 -0.40 1.17 16 26 C -0.15 -2.62 9.09 37.16 0.34 -2.28 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.11 1.35 6.46 -51.93 -0.34 1.02 16 32 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.16 1.72 4.71 -52.49 -0.25 1.48 16 35 H 0.09 1.05 5.30 -51.93 -0.28 0.77 16 36 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.39 10.11 7.54 -40.82 -0.31 9.80 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.09 6.86 -51.93 -0.36 0.73 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -31.34 345.72 -8.42 -39.76 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.52 Total: 10.63 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.80 Total: -2.27 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.36 Total: -59.90 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.34 -8.42 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987533157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.859 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds