Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47267 * 2 1 4 4 C 1.35530 * 125.67977 * 265.23072 * 3 2 1 5 5 C 1.35451 * 108.87346 * 180.30576 * 4 3 2 6 6 C 1.39838 * 107.86336 * 359.73314 * 5 4 3 7 7 C 1.37657 * 125.67535 * 85.07880 * 3 2 1 8 8 C 1.46668 * 126.23416 * 359.96094 * 7 3 2 9 9 O 1.21697 * 120.00302 * 7.99108 * 8 7 3 10 10 N 1.34775 * 120.00187 * 187.99634 * 8 7 3 11 11 C 1.47428 * 125.64513 * 358.88172 * 10 8 7 12 12 C 1.54908 * 104.83172 * 155.91695 * 11 10 8 13 13 C 1.55155 * 101.58267 * 37.00893 * 12 11 10 14 14 H 1.09003 * 110.72338 * 82.86106 * 13 12 11 15 15 N 1.46501 * 110.71852 * 205.95696 * 13 12 11 16 16 C 1.36937 * 120.00220 * 271.15446 * 15 13 12 17 17 H 1.08004 * 119.99760 * 0.02562 * 16 15 13 18 18 C 1.38808 * 120.00023 * 179.97438 * 16 15 13 19 19 N 1.31611 * 120.00425 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47035 * 60.00703 * 20 18 16 22 22 H 1.48501 * 109.47103 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47529 * 300.00395 * 20 18 16 24 24 C 1.47018 * 125.65388 * 178.93035 * 10 8 7 25 25 H 1.09007 * 109.88689 * 300.43463 * 24 10 8 26 26 C 1.53002 * 109.88180 * 61.59691 * 24 10 8 27 27 H 1.08992 * 109.47401 * 175.01809 * 1 2 3 28 28 H 1.09003 * 109.46976 * 295.02320 * 1 2 3 29 29 H 1.09005 * 109.46830 * 55.01311 * 1 2 3 30 30 H 1.08996 * 109.47067 * 239.99886 * 2 1 3 31 31 H 1.08998 * 109.46595 * 120.00479 * 2 1 3 32 32 H 1.08004 * 125.56425 * 0.06787 * 4 3 2 33 33 H 1.07997 * 126.06767 * 179.76451 * 5 4 3 34 34 H 1.07996 * 126.45545 * 179.97438 * 6 5 4 35 35 H 1.08997 * 110.36820 * 37.07980 * 11 10 8 36 36 H 1.09003 * 110.45805 * 274.79636 * 11 10 8 37 37 H 1.09002 * 111.00704 * 278.93146 * 12 11 10 38 38 H 1.09006 * 111.00157 * 155.08105 * 12 11 10 39 39 H 0.96999 * 120.00155 * 91.15842 * 15 13 12 40 40 H 0.96999 * 120.00761 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47358 * 177.80908 * 26 24 10 42 42 H 1.09000 * 109.47096 * 297.81270 * 26 24 10 43 43 H 1.08999 * 109.46824 * 57.80746 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3682 2.0959 -1.0971 5 6 2.7762 3.3270 -0.7062 6 6 2.6736 3.3907 0.6869 7 6 2.1956 2.1700 1.1141 8 6 1.9302 1.7808 2.5031 9 8 1.6528 0.6261 2.7691 10 7 1.9935 2.7019 3.4849 11 6 2.3392 4.1241 3.3078 12 6 1.6911 4.8433 4.5170 13 6 1.8974 3.8003 5.6470 14 1 2.8973 3.8853 6.0726 15 7 0.8782 3.9555 6.6879 16 6 1.0954 4.8081 7.7372 17 1 2.0180 5.3665 7.7972 18 6 0.1296 4.9555 8.7232 19 7 -0.9949 4.2754 8.6499 20 14 0.4263 6.1181 10.1549 21 1 0.6264 7.4965 9.6400 22 1 -0.7482 6.0943 11.0634 23 1 1.6365 5.6874 10.8999 24 6 1.7302 2.4548 4.9101 25 1 0.7133 2.0845 5.0405 26 6 2.7322 1.4350 5.4551 27 1 -0.3634 -1.0237 -0.0892 28 1 -0.3633 0.4347 0.9312 29 1 -0.3633 0.5893 -0.8420 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3316 1.7405 -2.1163 33 1 3.1193 4.1190 -1.3554 34 1 2.9223 4.2364 1.3107 35 1 1.9232 4.5022 2.3740 36 1 3.4209 4.2579 3.3221 37 1 0.6307 5.0246 4.3414 38 1 2.2125 5.7733 4.7438 39 1 0.0495 3.4542 6.6339 40 1 -1.6697 4.3781 9.3390 41 1 2.5559 1.2860 6.5204 42 1 2.6084 0.4877 4.9303 43 1 3.7462 1.8049 5.3029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987533157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = 21.081922 kcal Electronic energy + Delta-G solvation = -23778.526172 eV Core-core repulsion = 20438.577143 eV Total energy + Delta-G solvation = -3339.949029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43289 -40.77675 -38.61678 -36.04879 -35.04959 -33.45324 -32.43509 -31.14430 -30.25422 -29.61307 -26.93899 -24.98482 -24.87342 -24.20230 -22.28952 -21.77070 -21.09556 -19.95258 -19.16537 -18.05060 -17.64614 -16.83938 -16.56139 -16.28957 -15.87129 -15.36915 -15.35157 -15.09966 -14.79921 -14.72970 -14.40376 -14.14637 -13.62909 -13.61544 -13.31707 -13.28168 -13.08897 -13.02548 -12.89572 -12.77205 -12.58396 -12.27178 -12.20304 -12.15540 -12.07291 -11.70089 -11.49391 -10.96547 -10.83992 -9.78296 -9.63088 -9.11765 -9.01676 -7.92884 -5.23191 0.51825 1.50038 1.53238 1.56845 1.59533 1.88270 2.26344 2.38001 2.58922 3.36713 3.49504 3.73296 3.80933 3.82468 4.02851 4.08968 4.16271 4.19296 4.32872 4.36536 4.39541 4.44006 4.47264 4.57080 4.65282 4.70237 4.74639 4.86176 4.91442 5.02212 5.11769 5.19600 5.20947 5.22721 5.28993 5.36464 5.45636 5.55473 5.90605 6.05579 6.26928 6.38822 6.52683 7.11104 7.33473 8.04921 8.29316 9.30542 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.003585 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.854047 B = 7807.566311 C = 8213.872002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 N -0.416 5.416 4 C 0.024 3.976 5 C -0.220 4.220 6 C -0.152 4.152 7 C -0.083 4.083 8 C 0.591 3.409 9 O -0.587 6.587 10 N -0.598 5.598 11 C 0.093 3.907 12 C -0.148 4.148 13 C 0.172 3.828 14 H 0.074 0.926 15 N -0.728 5.728 16 C -0.239 4.239 17 H 0.084 0.916 18 C -0.075 4.075 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.275 1.275 22 H -0.301 1.301 23 H -0.277 1.277 24 C 0.137 3.863 25 H 0.044 0.956 26 C -0.143 4.143 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.204 0.796 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 -3.235 -22.511 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.090 5.090 4 C -0.111 4.111 5 C -0.243 4.243 6 C -0.178 4.178 7 C -0.196 4.196 8 C 0.384 3.616 9 O -0.470 6.470 10 N -0.330 5.330 11 C -0.028 4.028 12 C -0.189 4.189 13 C 0.062 3.938 14 H 0.091 0.909 15 N -0.367 5.367 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.267 4.267 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.200 1.200 22 H -0.227 1.227 23 H -0.203 1.203 24 C 0.033 3.967 25 H 0.063 0.937 26 C -0.201 4.201 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.099 0.901 32 H 0.221 0.779 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.230 -4.152 -22.249 24.443 hybrid contribution -0.785 0.161 1.291 1.519 sum 8.445 -3.992 -20.958 22.945 Atomic orbital electron populations 1.22017 0.94153 1.03839 1.01396 1.22131 0.95898 0.79371 1.05406 1.44280 1.47391 1.12067 1.05250 1.22706 1.03134 0.92822 0.92436 1.21230 1.09879 0.98514 0.94700 1.22318 1.02705 0.95887 0.96904 1.19871 1.17878 0.94726 0.87099 1.17047 0.76762 0.83898 0.83926 1.90719 1.52299 1.19658 1.84361 1.48149 1.67691 1.10709 1.06423 1.23028 1.01166 0.78701 0.99940 1.23424 1.00743 0.99734 0.94966 1.21427 0.93272 0.90881 0.88238 0.90851 1.42499 1.18252 1.51354 1.24643 1.19605 1.01437 1.16353 0.99607 0.89777 1.25575 0.96589 1.02464 1.02043 1.69826 1.08909 1.46851 1.36668 0.85203 0.76436 0.79017 0.79036 1.20050 1.22717 1.20336 1.21636 0.98130 0.97076 0.79880 0.93733 1.21930 0.98872 0.98561 1.00741 0.88982 0.95346 0.91172 0.85762 0.90097 0.77925 0.81552 0.81291 0.87668 0.88570 0.92695 0.88830 0.79785 0.94118 0.92111 0.92940 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 71.98 0.74 -2.33 16 2 C 0.09 1.82 6.23 86.38 0.54 2.36 16 3 N -0.42 -9.37 2.76 -511.03 -1.41 -10.78 16 4 C 0.02 0.40 11.37 83.48 0.95 1.35 16 5 C -0.22 -3.81 10.81 22.01 0.24 -3.57 16 6 C -0.15 -3.34 9.16 22.57 0.21 -3.14 16 7 C -0.08 -2.30 6.84 40.34 0.28 -2.02 16 8 C 0.59 20.05 7.61 86.44 0.66 20.71 16 9 O -0.59 -23.05 13.77 -4.34 -0.06 -23.11 16 10 N -0.60 -19.36 3.06 -792.72 -2.43 -21.79 16 11 C 0.09 2.38 5.24 86.85 0.46 2.83 16 12 C -0.15 -4.71 6.77 31.99 0.22 -4.49 16 13 C 0.17 6.59 3.12 46.18 0.14 6.74 16 14 H 0.07 2.73 7.81 -2.39 -0.02 2.71 16 15 N -0.73 -36.19 5.24 -317.33 -1.66 -37.86 16 16 C -0.24 -12.80 9.97 84.03 0.84 -11.97 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 19 N -0.97 -59.58 13.06 21.65 0.28 -59.29 16 20 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 C 0.14 5.10 3.22 45.34 0.15 5.25 16 25 H 0.04 1.94 7.71 -2.38 -0.02 1.92 16 26 C -0.14 -4.99 9.09 71.98 0.65 -4.33 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.12 1.44 8.12 -2.39 -0.02 1.42 16 31 H 0.08 2.06 6.46 -2.39 -0.02 2.05 16 32 H 0.20 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.17 3.12 4.71 -2.91 -0.01 3.11 16 35 H 0.11 2.32 5.30 -2.39 -0.01 2.30 16 36 H 0.10 1.98 8.01 -2.39 -0.02 1.96 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.37 20.42 7.54 -92.71 -0.70 19.72 16 40 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.92 6.86 -2.39 -0.02 1.90 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.01 345.72 3.58 -67.43 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.31 Total: 34.39 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.52 Total: 3.63 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -5.22 Total: -129.72 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.01 3.58 -67.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987533157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.508 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds